RchiOBHm_Chr2g0103871

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000171
Physical Location & Seq
Forward (+)
15216952 .. 15221786
4835 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47821

Sequence Viewer

Length: 696 bp
ATGTTTCGAGTAATTATTCGTTCGAAATATTTCCACATCACCCCCAAACCACGTAATCGTACTAACACCCCACTTAATAATTTTCAGAAATCATCACAAATTAATAATGAATTTTTGGGTTATTACACTCATAAACCGAGCAAAAACCCATCTATGAAGAAGCACTTTGTGCTTGTGCACGGAGCTAGTCATGGAGCATGGTGTTGGTACAAGCTAGCAACTCTCCTGACCTCTGCAGGTCACAATGTTACAACCCTAGACCTTCCTACATCCGGCATAGTGATAAGCAAGCTTGAATTTGGCAAATCTAATTATTTTACGGACACTCAATATAGATTTGATGAGGGCCCCGACAAACCTGCAACTTCGTTCCTCTATGGGCCAGAATTCATCTCCTTTTCCTTGTATCAGCTCTCGCCACCAGAGGACTTAACACTAGAGTTGACATTGTTGAGATTTGCCCCTTTGTTTCATGAAGAATTAATATTGAGCAAGAAGAATTATGGATCAGTTCGTAGAGTATACATCAAGTGCGACCAAGATCAGACAATAAAAGAGGATCTGGCAAGGCTGATGATCAACGATAATCCACCAGATGAAGTCAAAGTGATTAATGGCTCTGATCATATGGTCATGTTCTCTAGACCGCTGGAGCTATTCTCCAGCCTCTACCAGATTGCTCAAAATTATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

231

Amino Acids

26.67

Weight (kDa)

8.91

Isoelectric Point (pI)

26.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 227, 367
AccI GTMKAC 1 cut(s) 522
AciI CCGC 1 cut(s) 647
AclWI GGATC 2 cut(s) 514, 567
AcsI RAATTY 3 cut(s) 110, 296, 386
AdeI CACNNNGTG 1 cut(s) 169
AfaI GTAC 2 cut(s) 61, 209
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 1 cut(s) 296
AluBI AGCT 5 cut(s) 185, 214, 292, 412, 655
AluI AGCT 5 cut(s) 185, 214, 292, 412, 655
Alw21I GWGCWC 1 cut(s) 180
Alw44I GTGCAC 1 cut(s) 176
AlwI GGATC 2 cut(s) 514, 567
AoxI GGCC 2 cut(s) 346, 380
ApaI GGGCCC 1 cut(s) 350
ApaLI GTGCAC 1 cut(s) 176
ApoI RAATTY 3 cut(s) 110, 296, 386
AseI ATTAAT 3 cut(s) 102, 482, 612
Asp700I GAANNNNTTC 1 cut(s) 29
AspS9I GGNCC 3 cut(s) 346, 347, 380
AsuHPI GGTGA 1 cut(s) 31
AsuII TTCGAA 1 cut(s) 23
AsuNHI GCTAGC 1 cut(s) 214
BaeGI GKGCMC 2 cut(s) 180, 350
BanII GRGCYC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 180
BccI CCATC 1 cut(s) 157
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BclI TGATCA 2 cut(s) 576, 622
BfaI CTAG 5 cut(s) 186, 215, 257, 437, 642
BfmI CTRYAG 1 cut(s) 234
BfuAI ACCTGC 2 cut(s) 227, 367
BmgT120I GGNCC 3 cut(s) 346, 347, 380
BmiI GGNNCC 2 cut(s) 348, 349
BmtI GCTAGC 1 cut(s) 218
BplI GAGNNNNNCTC 2 cut(s) 644, 676
BpmI CTGGAG 2 cut(s) 646, 671
Bpu14I TTCGAA 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 53
Bsc4I CCNNNNNNNGG 1 cut(s) 272
BseGI GGATG 1 cut(s) 269
BseLI CCNNNNNNNGG 1 cut(s) 272
BseSI GKGCMC 2 cut(s) 180, 350
BshFI GGCC 2 cut(s) 348, 382
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 272
BsnI GGCC 2 cut(s) 348, 382
Bsp119I TTCGAA 1 cut(s) 23
Bsp120I GGGCCC 1 cut(s) 346
Bsp1286I GDGCHC 2 cut(s) 180, 350
Bsp143I GATC 5 cut(s) 506, 541, 559, 576, 622
BspACI CCGC 1 cut(s) 647
BspANI GGCC 2 cut(s) 348, 382
BspHI TCATGA 1 cut(s) 472
BspLI GGNNCC 2 cut(s) 348, 349
BspMAI CTGCAG 1 cut(s) 238
BspMI ACCTGC 2 cut(s) 227, 367
BspOI GCTAGC 1 cut(s) 218
BspPI GGATC 2 cut(s) 514, 567
BspT104I TTCGAA 1 cut(s) 23
BssMI GATC 5 cut(s) 506, 541, 559, 576, 622
BssNAI GTATAC 1 cut(s) 523
Bst1107I GTATAC 1 cut(s) 523
BstAPI GCANNNNNTGC 1 cut(s) 169
BstBAI YACGTR 1 cut(s) 53
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 216, 290
BstF5I GGATG 1 cut(s) 269
BstKTI GATC 5 cut(s) 509, 544, 562, 579, 625
BstMBI GATC 5 cut(s) 506, 541, 559, 576, 622
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 234
BstSLI GKGCMC 2 cut(s) 180, 350
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
BstZ17I GTATAC 1 cut(s) 523
BsuRI GGCC 2 cut(s) 348, 382
BtsCI GGATG 1 cut(s) 269
BveI ACCTGC 2 cut(s) 227, 367
Cac8I GCNNGC 2 cut(s) 216, 290
CciI TCATGA 1 cut(s) 472
Cfr13I GGNCC 3 cut(s) 346, 347, 380
Csp6I GTAC 2 cut(s) 60, 208
CviAII CATG 4 cut(s) 191, 198, 473, 634
CviQI GTAC 2 cut(s) 60, 208
DpnI GATC 5 cut(s) 508, 543, 561, 578, 624
DpnII GATC 5 cut(s) 506, 541, 559, 576, 622
DraIII CACNNNGTG 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 350
EcoO109I RGGNCCY 2 cut(s) 346, 347
EcoRI GAATTC 1 cut(s) 386
EcoT38I GRGCYC 1 cut(s) 350
FaeI CATG 4 cut(s) 194, 201, 476, 637
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 4 cut(s) 190, 197, 472, 633
FauNDI CATATG 1 cut(s) 627
FbaI TGATCA 2 cut(s) 576, 622
FblI GTMKAC 1 cut(s) 522
FokI GGATG 1 cut(s) 256
FriOI GRGCYC 1 cut(s) 350
FspBI CTAG 5 cut(s) 186, 215, 257, 437, 642
GsuI CTGGAG 2 cut(s) 646, 671
HaeIII GGCC 2 cut(s) 348, 382
HapII CCGG 1 cut(s) 273
Hin1II CATG 4 cut(s) 194, 201, 476, 637
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HindIII AAGCTT 1 cut(s) 290
HpaII CCGG 1 cut(s) 273
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 3 cut(s) 178, 444, 523
Hpy188I TCNGA 3 cut(s) 87, 546, 622
Hpy188III TCNNGA 3 cut(s) 226, 473, 642
Hpy8I GTNNAC 3 cut(s) 178, 444, 523
HpyAV CCTTC 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 3 cut(s) 178, 236, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 4 cut(s) 194, 201, 476, 637
Ksp22I TGATCA 2 cut(s) 576, 622
Kzo9I GATC 5 cut(s) 506, 541, 559, 576, 622
LmnI GCTCC 3 cut(s) 182, 194, 652
MaeI CTAG 5 cut(s) 186, 215, 257, 437, 642
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 2 cut(s) 239, 247
MalI GATC 5 cut(s) 508, 543, 561, 578, 624
MboI GATC 5 cut(s) 506, 541, 559, 576, 622
MboII GAAGA 3 cut(s) 169, 488, 508
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 2 cut(s) 180, 350
MnlI CCTC 6 cut(s) 241, 337, 383, 418, 550, 677
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 6 cut(s) 75, 102, 431, 482, 612, 694
MspA1I CMGCKG 1 cut(s) 649
MspI CCGG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 169
NdeI CATATG 1 cut(s) 627
NdeII GATC 5 cut(s) 506, 541, 559, 576, 622
NheI GCTAGC 1 cut(s) 214
NlaIII CATG 4 cut(s) 194, 201, 476, 637
NlaIV GGNNCC 2 cut(s) 348, 349
NmuCI GTSAC 1 cut(s) 239
NspV TTCGAA 1 cut(s) 23
PagI TCATGA 1 cut(s) 472
PdmI GAANNNNTTC 1 cut(s) 29
Ppu21I YACGTR 1 cut(s) 53
PshBI ATTAAT 3 cut(s) 102, 482, 612
PspN4I GGNNCC 2 cut(s) 348, 349
PspOMI GGGCCC 1 cut(s) 346
PspPI GGNCC 3 cut(s) 346, 347, 380
PstI CTGCAG 1 cut(s) 238
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 2 cut(s) 61, 209
RsaNI GTAC 2 cut(s) 60, 208
SaqAI TTAA 6 cut(s) 75, 102, 431, 482, 612, 694
Sau3AI GATC 5 cut(s) 506, 541, 559, 576, 622
Sau96I GGNCC 3 cut(s) 346, 347, 380
SduI GDGCHC 2 cut(s) 180, 350
SfcI CTRYAG 1 cut(s) 234
SfuI TTCGAA 1 cut(s) 23
SsiI CCGC 1 cut(s) 647
SspI AATATT 2 cut(s) 29, 486
SspMI CTAG 5 cut(s) 186, 215, 257, 437, 642
TaiI ACGT 1 cut(s) 55
TaqI TCGA 2 cut(s) 7, 23
Tru1I TTAA 6 cut(s) 75, 102, 431, 482, 612, 694
Tru9I TTAA 6 cut(s) 75, 102, 431, 482, 612, 694
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 6 cut(s) 123, 170, 379, 461, 489, 612
TspGWI ACGGA 2 cut(s) 195, 335
VneI GTGCAC 1 cut(s) 176
VspI ATTAAT 3 cut(s) 102, 482, 612
XapI RAATTY 3 cut(s) 110, 296, 386
XbaI TCTAGA 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 522
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 5 cut(s) 186, 215, 257, 437, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.