Rh2CG172900

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000171
Physical Location & Seq
Forward (+)
15448187 .. 15448570
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG172900.1

Sequence Viewer

Length: 384 bp
ATGGAGCAGATTGTTATGAGGATCAGAGAGAAGCATTTTATGCTGTTTGTATTGTTTCTTTGCTTACTACCAATCTGTACCTCATCATCCCCATCTCCACCCCATTCTTACAACCCTACCCAAAACCCGGTCGCCAAGAAGCATTTCGTGCTGGTTCACGGAGCCGGTCACGGGGCATGGTGTTGGTACAAGGTGGCAACTCTGCTGAAACAGTCAGGCCACAATGTTACCGCTCTGGACCTTGCAGCATCTGGAATTGACCCAACTCAGATACAAGAAGTTCGTTCTTTCGCGGTTTACGTTGAACCGTTGACGAATTTCATGGAGTCTCTCTCGCCAAAGGAGAGAGGGTTGTTCTGGTTGGCCACAGCTTGGGTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

127

Amino Acids

14.31

Weight (kDa)

7.8

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 48 - 114 9.4e-06 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 49 - 91 2.5e-06 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 372
AccBSI CCGCTC 1 cut(s) 233
AccII CGCG 1 cut(s) 293
AciI CCGC 2 cut(s) 231, 293
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 316
AfaI GTAC 2 cut(s) 79, 188
AfiI CCNNNNNNNGG 3 cut(s) 127, 171, 372
AgsI TTSAA 1 cut(s) 305
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 1 cut(s) 29
AlwNI CAGNNNCTG 1 cut(s) 251
AoxI GGCC 2 cut(s) 217, 363
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 316
Asp700I GAANNNNTTC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 238
AsuC2I CCSGG 1 cut(s) 128
AvaII GGWCC 1 cut(s) 238
BalI TGGCCA 1 cut(s) 365
BbvI GCAGC 1 cut(s) 257
BccI CCATC 1 cut(s) 100
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 333
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 317, 349
BpuMI CCSGG 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 171, 372
Bse118I RCCGGY 1 cut(s) 164
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 3 cut(s) 127, 171, 372
BseMII CTCAG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 257
Bsh1236I CGCG 1 cut(s) 293
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 219, 365
BsiEI CGRYCG 1 cut(s) 132
BsiSI CCGG 2 cut(s) 128, 165
BslI CCNNNNNNNGG 3 cut(s) 127, 171, 372
BsmAI GTCTC 1 cut(s) 333
BsnI GGCC 2 cut(s) 219, 365
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 2 cut(s) 231, 293
BspANI GGCC 2 cut(s) 219, 365
BspCNI CTCAG 1 cut(s) 280
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 1 cut(s) 163
BspPI GGATC 1 cut(s) 29
BsrBI CCGCTC 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 164
BssMI GATC 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 213, 309
BstAPI GCANNNNNTGC 2 cut(s) 40, 148
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 1 cut(s) 293
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 1 cut(s) 21
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 2 cut(s) 40, 148
BstSCI CCNGG 1 cut(s) 126
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 257
BsuRI GGCC 2 cut(s) 219, 365
BtsCI GGATG 1 cut(s) 86
CaiI CAGNNNCTG 1 cut(s) 251
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 238
Csp6I GTAC 2 cut(s) 78, 187
CviAII CATG 2 cut(s) 177, 322
CviJI RGCY 4 cut(s) 164, 219, 365, 371
CviKI_1 RGCY 4 cut(s) 164, 219, 365, 371
CviQI GTAC 2 cut(s) 78, 187
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 238
FaeI CATG 2 cut(s) 180, 325
FaiI YATR 4 cut(s) 17, 41, 178, 323
FatI CATG 2 cut(s) 176, 321
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 246
HaeIII GGCC 2 cut(s) 219, 365
HapII CCGG 2 cut(s) 128, 165
Hin1II CATG 2 cut(s) 180, 325
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 1 cut(s) 326
HpaII CCGG 2 cut(s) 128, 165
Hpy166II GTNNAC 3 cut(s) 157, 298, 312
Hpy188I TCNGA 2 cut(s) 26, 270
Hpy188III TCNNGA 2 cut(s) 236, 252
Hpy8I GTNNAC 3 cut(s) 157, 298, 312
HpyCH4III ACNGT 2 cut(s) 213, 309
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 148
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 2 cut(s) 180, 325
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 2 cut(s) 4, 161
LpnPI CCDG 7 cut(s) 137, 141, 178, 201, 221, 237, 343
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 1 cut(s) 257
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 2 cut(s) 167, 226
MalI GATC 1 cut(s) 23
MbiI CCGCTC 1 cut(s) 233
MboI GATC 1 cut(s) 21
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 2 cut(s) 255, 316
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 3 cut(s) 12, 91, 341
Mox20I TGGCCA 1 cut(s) 365
MroXI GAANNNNTTC 1 cut(s) 143
MscI TGGCCA 1 cut(s) 365
Msp20I TGGCCA 1 cut(s) 365
MspI CCGG 2 cut(s) 128, 165
MspR9I CCNGG 1 cut(s) 128
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 40, 148
NciI CCSGG 1 cut(s) 128
NdeII GATC 1 cut(s) 21
NlaIII CATG 2 cut(s) 180, 325
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 372
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 251
RsaI GTAC 2 cut(s) 79, 188
RsaNI GTAC 2 cut(s) 78, 187
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 128
SetI ASST 5 cut(s) 83, 195, 243, 303, 373
SfaNI GCATC 1 cut(s) 257
SinI GGWCC 1 cut(s) 238
Sse9I AATT 2 cut(s) 255, 316
SsiI CCGC 2 cut(s) 231, 293
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 213, 309
TaiI ACGT 1 cut(s) 303
TasI AATT 2 cut(s) 255, 316
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 310
TspGWI ACGGA 1 cut(s) 174
Van91I CCANNNNNTGG 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 238
XapI RAATTY 1 cut(s) 316
XcmI CCANNNNNNNNNTGG 1 cut(s) 373
XmnI GAANNNNTTC 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.