Rorug01G0084300

Methylketone synthase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
13692332 .. 13695132
2801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0084300.1

Sequence Viewer

Length: 576 bp
ATGACCGAGAAGGACGAGCATGAGGAAGGGGACGACGACGACGATGATGAATACGACCCCTATCGTTTATTCCTCTCTCATCTCTCCCTCATCTGCAAACCAGGAAGAAAGCCTCAAGTTTTGGTTCAACTTCCAGAGAAAATAGCGGTTCAAGAAGCGGCTGAAATTCATCGTTTCAATCGTGAAGCTTTCTCCTACCGAGCTATCAATTGGTATGAGGTGAAGCTTGTGTTTGTGGCATGTTACTTGTATCAAAAATATATGAGGGAGCAAATTCTGAGGTATAGAGGAGGCAAAGACCATCTTGATTCATCTGACAAGTCCTCAGCTGGCAAAGTTGCTGCAGGGTTCAAGGACAACTCCATTTGCAGCTCTCGTTCTGCCTTCAGTTTGACTCTTATGAGTATCTATTTAAAGAGCTTAGCAAGTACAGAGATGGATCATTCTCAGGCTATAATTAAAGAGTTGGTGTATGAAAAGCAATTGGATAGGCAAGAAATGGATGACTTGATGAAGCAAGATGAGCTAGAAGTTGAAAGAAAGTTGAGAAAGCTTTGGCTGATCTTTGTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

191

Amino Acids

22.46

Weight (kDa)

5.33

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 146, 158
AclWI GGATC 1 cut(s) 447
AcsI RAATTY 2 cut(s) 165, 273
AcuI CTGAAG 1 cut(s) 370
AfaI GTAC 1 cut(s) 430
AgsI TTSAA 5 cut(s) 128, 152, 178, 352, 536
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 8 cut(s) 188, 203, 226, 329, 372, 420, 526, 553
AluI AGCT 8 cut(s) 188, 203, 226, 329, 372, 420, 526, 553
AlwI GGATC 1 cut(s) 447
ApeKI GCWGC 2 cut(s) 341, 369
ApoI RAATTY 2 cut(s) 165, 273
AsuHPI GGTGA 1 cut(s) 232
BbvCI CCTCAGC 1 cut(s) 325
BbvI GCAGC 2 cut(s) 328, 381
BccI CCATC 2 cut(s) 309, 430
BciT130I CCWGG 1 cut(s) 102
BfaI CTAG 1 cut(s) 527
BfmI CTRYAG 1 cut(s) 342
BisI GCNGC 3 cut(s) 159, 342, 370
BlpI GCTNAGC 1 cut(s) 421
BlsI GCNGC 3 cut(s) 160, 343, 371
Bme1390I CCNGG 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 325
Bpu1102I GCTNAGC 1 cut(s) 421
BpuEI CTTGAG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 508
BseMII CTCAG 3 cut(s) 269, 339, 461
BseRI GAGGAG 1 cut(s) 303
BseXI GCAGC 2 cut(s) 328, 381
BslFI GGGAC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 439, 561
Bsp1720I GCTNAGC 1 cut(s) 421
BspACI CCGC 2 cut(s) 146, 158
BspCNI CTCAG 3 cut(s) 270, 338, 460
BspMAI CTGCAG 1 cut(s) 346
BspPI GGATC 1 cut(s) 447
BssMI GATC 2 cut(s) 439, 561
Bst2UI CCWGG 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 4 cut(s) 278, 325, 421, 447
BstF5I GGATG 1 cut(s) 508
BstKTI GATC 2 cut(s) 442, 564
BstMBI GATC 2 cut(s) 439, 561
BstMWI GCNNNNNNNGC 1 cut(s) 523
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 2 cut(s) 328, 381
BtsCI GGATG 1 cut(s) 508
Cac8I GCNNGC 1 cut(s) 331
Csp6I GTAC 1 cut(s) 429
CviAII CATG 2 cut(s) 20, 240
CviQI GTAC 1 cut(s) 429
DdeI CTNAG 4 cut(s) 278, 325, 421, 447
DpnI GATC 2 cut(s) 441, 563
DpnII GATC 2 cut(s) 439, 561
DraI TTTAAA 1 cut(s) 414
Eco57I CTGAAG 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 100
FaeI CATG 2 cut(s) 23, 243
FaiI YATR 9 cut(s) 21, 216, 241, 261, 263, 285, 401, 455, 474
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 1 cut(s) 44
FatI CATG 2 cut(s) 19, 239
Fnu4HI GCNGC 3 cut(s) 159, 342, 370
FokI GGATG 1 cut(s) 515
Fsp4HI GCNGC 3 cut(s) 159, 342, 370
FspBI CTAG 1 cut(s) 527
GluI GCNGC 3 cut(s) 159, 342, 370
Hin1II CATG 2 cut(s) 23, 243
HindIII AAGCTT 3 cut(s) 186, 224, 551
HinfI GANTC 2 cut(s) 308, 394
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 2 cut(s) 279, 316
Hpy188III TCNNGA 4 cut(s) 134, 152, 182, 305
Hpy99I CGWCG 3 cut(s) 38, 41, 44
HpyAV CCTTC 3 cut(s) 4, 20, 394
HpyCH4V TGCA 3 cut(s) 96, 344, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 523
HpyF3I CTNAG 4 cut(s) 278, 325, 421, 447
Hsp92II CATG 2 cut(s) 23, 243
Kzo9I GATC 2 cut(s) 439, 561
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 6 cut(s) 87, 114, 147, 315, 330, 434
Lsp1109I GCAGC 2 cut(s) 328, 381
MaeI CTAG 1 cut(s) 527
MaeIII GTNAC 1 cut(s) 242
MalI GATC 2 cut(s) 441, 563
MboI GATC 2 cut(s) 439, 561
MboII GAAGA 1 cut(s) 117
MfeI CAATTG 2 cut(s) 208, 482
MluCI AATT 5 cut(s) 165, 208, 273, 456, 482
MlyI GAGTC 1 cut(s) 388
MseI TTAA 3 cut(s) 413, 459, 574
MspA1I CMGCKG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 102
MunI CAATTG 2 cut(s) 208, 482
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 523
NdeII GATC 2 cut(s) 439, 561
NlaIII CATG 2 cut(s) 23, 243
NspI RCATGY 1 cut(s) 243
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 178
PfeI GAWTC 1 cut(s) 308
PkrI GCNGC 3 cut(s) 160, 343, 371
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PstI CTGCAG 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 1 cut(s) 430
RsaNI GTAC 1 cut(s) 429
SaqAI TTAA 3 cut(s) 413, 459, 574
SatI GCNGC 3 cut(s) 159, 342, 370
Sau3AI GATC 2 cut(s) 439, 561
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 5 cut(s) 165, 208, 273, 456, 482
SsiI CCGC 2 cut(s) 146, 158
SspMI CTAG 1 cut(s) 527
StyD4I CCNGG 1 cut(s) 100
TaqII GACCGA 1 cut(s) 20
TasI AATT 5 cut(s) 165, 208, 273, 456, 482
TatI WGTACW 1 cut(s) 428
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 3 cut(s) 413, 459, 574
Tru9I TTAA 3 cut(s) 413, 459, 574
TseI GCWGC 2 cut(s) 341, 369
TspDTI ATGAA 5 cut(s) 63, 158, 300, 489, 527
XapI RAATTY 2 cut(s) 165, 273
XceI RCATGY 1 cut(s) 243
XspI CTAG 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.