Rh2AG166700

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000171
Physical Location & Seq
Forward (+)
15664907 .. 15665170
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG166700.1

Sequence Viewer

Length: 264 bp
ATGGAGCATACAAAGCATTTTATTCTGGTTCATAGTTCTGGTCACGGAGCATGGTGTTGGTATAAGTTGGCAACTCTATTGAACTCCACAGGTCACAATGTTACAACTCTAGACCTTCCGGCATCCGAGATCAACCAAACACAGCAACAACAACTTCATTTGTTTTCCGACTACACTGAGCCATTGTTTGAATTTCTGGGGTCTCTGCAACCAAAAGAGAAGGGTATCCTGGTCGGTCACAGCATGGGTGGCCCTGTCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

87

Amino Acids

9.71

Weight (kDa)

6.11

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 6 - 86 3.6e-08 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 8 - 86 2.8e-09 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 191
AgsI TTSAA 2 cut(s) 82, 191
AjnI CCWGG 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 207
AoxI GGCC 1 cut(s) 250
ApoI RAATTY 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 230
BciVI GTATCC 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 110
BfuI GTATCC 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 251
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 207
BseBI CCWGG 1 cut(s) 230
BseGI GGATG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 168
BshFI GGCC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 207
BsnI GGCC 1 cut(s) 252
Bso31I GGTCTC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 129
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 207
BssMI GATC 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 122
BstKTI GATC 1 cut(s) 132
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 2 cut(s) 13, 249
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BsuI GTATCC 1 cut(s) 236
BsuRI GGCC 1 cut(s) 252
BtsCI GGATG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 251
CviAII CATG 2 cut(s) 51, 244
CviJI RGCY 2 cut(s) 181, 252
CviKI_1 RGCY 2 cut(s) 181, 252
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 228
FaeI CATG 2 cut(s) 54, 247
FaiI YATR 7 cut(s) 9, 33, 52, 63, 245, 260, 262
FatI CATG 2 cut(s) 50, 243
FokI GGATG 1 cut(s) 109
FspBI CTAG 1 cut(s) 110
HaeIII GGCC 1 cut(s) 252
HapII CCGG 1 cut(s) 119
Hin1II CATG 2 cut(s) 54, 247
HpaII CCGG 1 cut(s) 119
Hpy188I TCNGA 2 cut(s) 127, 169
Hpy188III TCNNGA 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 125, 214
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 249
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 2 cut(s) 54, 247
Kzo9I GATC 1 cut(s) 129
LmnI GCTCC 2 cut(s) 4, 47
LpnPI CCDG 7 cut(s) 11, 24, 75, 132, 182, 215, 242
LweI GCATC 1 cut(s) 131
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 4 cut(s) 41, 92, 100, 236
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MluCI AATT 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 192
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 2 cut(s) 13, 249
NdeII GATC 1 cut(s) 129
NlaIII CATG 2 cut(s) 54, 247
NmuCI GTSAC 3 cut(s) 41, 92, 236
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspPI GGNCC 1 cut(s) 251
Sau3AI GATC 1 cut(s) 129
Sau96I GGNCC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 230
SetI ASST 2 cut(s) 94, 117
SfaNI GCATC 1 cut(s) 131
Sse9I AATT 1 cut(s) 191
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 228
TaqII GACCGA 1 cut(s) 224
TasI AATT 1 cut(s) 191
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 3 cut(s) 41, 92, 236
Tsp45I GTSAC 3 cut(s) 41, 92, 236
TspDTI ATGAA 2 cut(s) 20, 146
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 1 cut(s) 181
XapI RAATTY 1 cut(s) 191
XbaI TCTAGA 1 cut(s) 109
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.