Rw2G013090

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000171
Physical Location & Seq
Forward (+)
13715295 .. 13716512
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G013090.1

Sequence Viewer

Length: 888 bp
ATGGAGCAGATTGTTATGAGCATGAGAGAGAAGCATTTTATGCTGTTTGTATTGTTTCTTTGCTTACTACCAATCTGTACCTCATCATCCCCATCTCCACCCCATTCTTACAACCCTACCCAAAACCCGGTCGCCAAGAAGCATTTCGTGCTGGTTCACGGAGCCGGTCACGGGGCATGGTGTTGGTACAAGGTGGCAACTCTGCTGAAACAGTCAGGCCACAATGTTACCGCTCTGGACCTTGCAGCATCTGGAATGGACCCAACTCAGATACAAGAAGTTCGTTCTTTCGCGGTTTACGTTGAACCGTTGACGAATTTCATGGAGTCTCTCTCGCCAAAGGAAACGGTTGTTCTGGTTGGCCACAGCTTTGGTGGAGTAGCCTTATCTATTGTCATGGAGAGGTTCCCTCAGAAAATTTCTGTTGCGGTTTTTGCCACCGCTGCCATGCCTGGTCCTGATATCAGTTTCTTGACTATAGTTCAAGAGGTTGGCAGTCATTTGGATTTTATGTACTCTCAATATAGATTTGATGATGGCGACACCAAACCTGCAACCTCGGCACTCGTGGGGCCGAAGGTGCTAGCCTCATCGTTCTACCAGCTCTCGCCACCAGAGGATTTAACACTAGCGGTCACACTGGTGAGATTTGACCCTCTTATTACAGAAGAACTGAAATTCTCAAAGCATAGATATGGATCGGTTCGTAAAGTATACATTTTGTGCGACCAAGACCATGCAATAAAGGTGGATCTTGCAATGTTGATGATCAACAAAAATCCTCCCGATGAAGTCAAATTGATAAATGGGTCTGATCACATGGTCATGTTCTCCAGACCACTCGATCTTTTCTCCAACATCCTACAAATTGCTGAGAAATACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

295

Amino Acids

32.81

Weight (kDa)

6.25

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 45 - 153 4.5e-12 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 48 - 279 1.8e-15 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 49 - 284 5.6e-21 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 559
AccBSI CCGCTC 1 cut(s) 233
AccI GTMKAC 1 cut(s) 714
AccII CGCG 1 cut(s) 293
AciI CCGC 5 cut(s) 231, 293, 428, 441, 632
AclWI GGATC 2 cut(s) 706, 759
AcoI YGGCCR 1 cut(s) 361
AcsI RAATTY 3 cut(s) 316, 417, 677
AfaI GTAC 3 cut(s) 79, 188, 515
AfiI CCNNNNNNNGG 2 cut(s) 127, 171
AgsI TTSAA 2 cut(s) 305, 485
AjnI CCWGG 1 cut(s) 451
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AleI CACNNNNGTG 1 cut(s) 641
AluBI AGCT 2 cut(s) 369, 604
AluI AGCT 2 cut(s) 369, 604
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 2 cut(s) 706, 759
AlwNI CAGNNNCTG 1 cut(s) 251
AoxI GGCC 3 cut(s) 217, 361, 572
ApeKI GCWGC 2 cut(s) 245, 443
ApoI RAATTY 3 cut(s) 316, 417, 677
Asp700I GAANNNNTTC 1 cut(s) 143
AspS9I GGNCC 4 cut(s) 238, 259, 455, 572
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 655
AsuNHI GCTAGC 1 cut(s) 583
AvaII GGWCC 3 cut(s) 238, 259, 455
BalI TGGCCA 1 cut(s) 363
BauI CACGAG 1 cut(s) 566
BbvI GCAGC 2 cut(s) 257, 430
BccI CCATC 2 cut(s) 100, 530
BciT130I CCWGG 1 cut(s) 453
BclI TGATCA 2 cut(s) 768, 814
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 333
BfaI CTAG 2 cut(s) 584, 629
BfmI CTRYAG 1 cut(s) 477
BfuAI ACCTGC 1 cut(s) 559
BisI GCNGC 2 cut(s) 246, 444
BlsI GCNGC 2 cut(s) 247, 445
Bme1390I CCNGG 2 cut(s) 128, 453
Bme18I GGWCC 3 cut(s) 238, 259, 455
BmgT120I GGNCC 4 cut(s) 238, 259, 455, 572
BmiI GGNNCC 4 cut(s) 163, 261, 407, 573
BmrFI CCNGG 2 cut(s) 128, 453
BmsI GCATC 1 cut(s) 257
BmtI GCTAGC 1 cut(s) 587
BplI GAGNNNNNCTC 5 cut(s) 317, 349, 394, 426, 866
BpmI CTGGAG 1 cut(s) 817
BpuMI CCSGG 1 cut(s) 128
BsaBI GATNNNNATC 1 cut(s) 697
BsaJI CCNNGG 1 cut(s) 558
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 171
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 645
Bse3DI GCAATG 1 cut(s) 765
Bse8I GATNNNNATC 1 cut(s) 697
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 558
BseGI GGATG 2 cut(s) 86, 858
BseJI GATNNNNATC 1 cut(s) 697
BseLI CCNNNNNNNGG 2 cut(s) 127, 171
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 3 cut(s) 281, 425, 864
BseNI ACTGG 1 cut(s) 645
BseXI GCAGC 2 cut(s) 257, 430
Bsh1236I CGCG 1 cut(s) 293
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 3 cut(s) 219, 363, 574
BsiEI CGRYCG 1 cut(s) 132
BsiSI CCGG 2 cut(s) 128, 165
BslI CCNNNNNNNGG 2 cut(s) 127, 171
BsmAI GTCTC 1 cut(s) 333
BsnI GGCC 3 cut(s) 219, 363, 574
Bsp143I GATC 5 cut(s) 698, 751, 768, 814, 844
BspACI CCGC 5 cut(s) 231, 293, 428, 441, 632
BspANI GGCC 3 cut(s) 219, 363, 574
BspCNI CTCAG 3 cut(s) 280, 424, 865
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 4 cut(s) 163, 261, 407, 573
BspMI ACCTGC 1 cut(s) 559
BspOI GCTAGC 1 cut(s) 587
BspPI GGATC 2 cut(s) 706, 759
BsrBI CCGCTC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 765
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 645
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 558
BssMI GATC 5 cut(s) 698, 751, 768, 814, 844
BssNAI GTATAC 1 cut(s) 715
BssSI CACGAG 1 cut(s) 566
Bst1107I GTATAC 1 cut(s) 715
Bst2BI CACGAG 1 cut(s) 566
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 3 cut(s) 213, 309, 349
BstAPI GCANNNNNTGC 2 cut(s) 40, 148
BstC8I GCNNGC 1 cut(s) 585
BstDEI CTNAG 3 cut(s) 267, 411, 873
BstF5I GGATG 2 cut(s) 86, 858
BstFNI CGCG 1 cut(s) 293
BstKTI GATC 5 cut(s) 701, 754, 771, 817, 847
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 5 cut(s) 698, 751, 768, 814, 844
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 6 cut(s) 40, 148, 434, 443, 560, 580
BstNI CCWGG 1 cut(s) 453
BstSCI CCNGG 2 cut(s) 126, 451
BstSFI CTRYAG 1 cut(s) 477
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 2 cut(s) 257, 430
BstX2I RGATCY 1 cut(s) 751
BstXI CCANNNNNNTGG 1 cut(s) 371
BstYI RGATCY 1 cut(s) 751
BstZ17I GTATAC 1 cut(s) 715
BsuRI GGCC 3 cut(s) 219, 363, 574
BtsCI GGATG 2 cut(s) 86, 858
BtsIMutI CAGTG 1 cut(s) 638
BveI ACCTGC 1 cut(s) 559
Cac8I GCNNGC 1 cut(s) 585
CaiI CAGNNNCTG 1 cut(s) 251
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 4 cut(s) 238, 259, 455, 572
Csp6I GTAC 3 cut(s) 78, 187, 514
CspCI CAANNNNNGTGG 2 cut(s) 729, 764
CviAII CATG 8 cut(s) 22, 177, 322, 397, 448, 737, 820, 826
CviJI RGCY 8 cut(s) 164, 219, 363, 369, 383, 574, 587, 604
CviKI_1 RGCY 8 cut(s) 164, 219, 363, 369, 383, 574, 587, 604
CviQI GTAC 3 cut(s) 78, 187, 514
DdeI CTNAG 3 cut(s) 267, 411, 873
DpnI GATC 5 cut(s) 700, 753, 770, 816, 846
DpnII GATC 5 cut(s) 698, 751, 768, 814, 844
EaeI YGGCCR 1 cut(s) 361
Eco32I GATATC 1 cut(s) 463
Eco47I GGWCC 3 cut(s) 238, 259, 455
EcoRII CCWGG 1 cut(s) 451
EcoRV GATATC 1 cut(s) 463
FaeI CATG 8 cut(s) 25, 180, 325, 400, 451, 740, 823, 829
FatI CATG 8 cut(s) 21, 176, 321, 396, 447, 736, 819, 825
FbaI TGATCA 2 cut(s) 768, 814
FblI GTMKAC 1 cut(s) 714
Fnu4HI GCNGC 2 cut(s) 246, 444
FokI GGATG 2 cut(s) 73, 845
Fsp4HI GCNGC 2 cut(s) 246, 444
FspBI CTAG 2 cut(s) 584, 629
GluI GCNGC 2 cut(s) 246, 444
GsuI CTGGAG 1 cut(s) 817
HaeIII GGCC 3 cut(s) 219, 363, 574
HapII CCGG 2 cut(s) 128, 165
Hin1II CATG 8 cut(s) 25, 180, 325, 400, 451, 740, 823, 829
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 1 cut(s) 326
HpaII CCGG 2 cut(s) 128, 165
HphI GGTGA 1 cut(s) 655
Hpy166II GTNNAC 4 cut(s) 157, 298, 312, 715
Hpy188I TCNGA 3 cut(s) 270, 414, 814
Hpy188III TCNNGA 7 cut(s) 236, 252, 458, 472, 485, 785, 834
Hpy8I GTNNAC 4 cut(s) 157, 298, 312, 715
HpyAV CCTTC 1 cut(s) 571
HpyCH4III ACNGT 3 cut(s) 213, 309, 349
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 4 cut(s) 245, 554, 740, 758
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 148, 434, 443, 560, 580
HpyF3I CTNAG 3 cut(s) 267, 411, 873
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 8 cut(s) 25, 180, 325, 400, 451, 740, 823, 829
Ksp22I TGATCA 2 cut(s) 768, 814
Kzo9I GATC 5 cut(s) 698, 751, 768, 814, 844
LmnI GCTCC 2 cut(s) 4, 161
Lsp1109I GCAGC 2 cut(s) 257, 430
LweI GCATC 1 cut(s) 257
MaeI CTAG 2 cut(s) 584, 629
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 3 cut(s) 167, 226, 634
MalI GATC 5 cut(s) 700, 753, 770, 816, 846
MbiI CCGCTC 1 cut(s) 233
MboI GATC 5 cut(s) 698, 751, 768, 814, 844
MboII GAAGA 1 cut(s) 680
MflI RGATCY 1 cut(s) 751
MlsI TGGCCA 1 cut(s) 363
MluCI AATT 5 cut(s) 316, 417, 677, 797, 867
MluNI TGGCCA 1 cut(s) 363
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 879
MnlI CCTC 9 cut(s) 91, 396, 420, 481, 568, 598, 610, 666, 792
Mox20I TGGCCA 1 cut(s) 363
MroXI GAANNNNTTC 1 cut(s) 143
MscI TGGCCA 1 cut(s) 363
MseI TTAA 1 cut(s) 623
MslI CAYNNNNRTG 3 cut(s) 641, 693, 824
Msp20I TGGCCA 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 2 cut(s) 128, 165
MspR9I CCNGG 2 cut(s) 128, 453
MvaI CCWGG 1 cut(s) 453
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 6 cut(s) 40, 148, 434, 443, 560, 580
NciI CCSGG 1 cut(s) 128
NdeII GATC 5 cut(s) 698, 751, 768, 814, 844
NheI GCTAGC 1 cut(s) 583
NlaIII CATG 8 cut(s) 25, 180, 325, 400, 451, 740, 823, 829
NlaIV GGNNCC 4 cut(s) 163, 261, 407, 573
NmeAIII GCCGAG 1 cut(s) 539
NmuCI GTSAC 2 cut(s) 167, 634
OliI CACNNNNGTG 1 cut(s) 641
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 247, 445
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 451
PspGI CCWGG 1 cut(s) 451
PspN4I GGNNCC 4 cut(s) 163, 261, 407, 573
PspPI GGNCC 4 cut(s) 238, 259, 455, 572
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 1 cut(s) 751
RsaI GTAC 3 cut(s) 79, 188, 515
RsaNI GTAC 3 cut(s) 78, 187, 514
RseI CAYNNNNRTG 3 cut(s) 641, 693, 824
SaqAI TTAA 1 cut(s) 623
SatI GCNGC 2 cut(s) 246, 444
Sau3AI GATC 5 cut(s) 698, 751, 768, 814, 844
Sau96I GGNCC 4 cut(s) 238, 259, 455, 572
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 2 cut(s) 128, 453
SfaNI GCATC 1 cut(s) 257
SfcI CTRYAG 1 cut(s) 477
SinI GGWCC 3 cut(s) 238, 259, 455
SmiMI CAYNNNNRTG 3 cut(s) 641, 693, 824
Sse9I AATT 5 cut(s) 316, 417, 677, 797, 867
SsiI CCGC 5 cut(s) 231, 293, 428, 441, 632
SspMI CTAG 2 cut(s) 584, 629
StyD4I CCNGG 2 cut(s) 126, 451
TaaI ACNGT 3 cut(s) 213, 309, 349
TaiI ACGT 1 cut(s) 303
TaqI TCGA 1 cut(s) 843
TasI AATT 5 cut(s) 316, 417, 677, 797, 867
TatI WGTACW 1 cut(s) 513
Tru1I TTAA 1 cut(s) 623
Tru9I TTAA 1 cut(s) 623
TscAI CASTG 1 cut(s) 645
TseFI GTSAC 2 cut(s) 167, 634
TseI GCWGC 2 cut(s) 245, 443
Tsp45I GTSAC 2 cut(s) 167, 634
TspDTI ATGAA 2 cut(s) 310, 804
TspGWI ACGGA 1 cut(s) 174
TspRI CASTG 1 cut(s) 645
VpaK11BI GGWCC 3 cut(s) 238, 259, 455
XapI RAATTY 3 cut(s) 316, 417, 677
XcmI CCANNNNNNNNNTGG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 714
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 2 cut(s) 584, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.