Rmu_sc0000112.1_g000021

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000112.1
OG0000171
Physical Location & Seq
Forward (+)
94588 .. 95729
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000112.1_g000021.1.cds

Sequence Viewer

Length: 735 bp
atggagaatataagactgaagcatttcgtgccttttcttttgcttctttgcttggcaagaatctgcactaatactgttgaagctgaccaaatctcatctgggaagaagcattttgtgctggttcatggagctggtcacggagcttggtgttggtataagctggcaaatctattgaactctacaggtcacaatgttacaactatagaccttgcagcatccggaatcaacccgatccaggtacagcaagttcattcgttctcagactatgttgagccattgatcaaatttctggggtctctgttaccaaaagagagggttatcctggttggccacagcatgggtggggccgtgatatcaattgccatggagaagttccctgagaaaattgcagcagctgtttatgctactgctttgatgcctggtcctgctctgagttacttgactattattgagaaggaaagatcggtgttgactgacacccagtatagatatgatcagggggccaacaatcctccaacctcggtactcgttggaccaaaacaattgtcttcgagactgtaccagctatcgccaccagaggacctttcaatagaggaggatctgcaaacgtggatgatcaggaaaaatcccccaaatgaagtgaaggtgataaatggttccgatcacatggtcatgttctctagaccattggagctgttctccaacctcctgaacgttgctgagaaatattcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

244

Amino Acids

27.07

Weight (kDa)

6.71

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 337
AccIII TCCGGA 1 cut(s) 218
AclI AACGTT 1 cut(s) 714
AclWI GGATC 2 cut(s) 226, 606
AcoI YGGCCR 1 cut(s) 328
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 3 cut(s) 240, 525, 560
AfiI CCNNNNNNNGG 2 cut(s) 235, 337
AgsI TTSAA 3 cut(s) 80, 175, 588
AjnI CCWGG 3 cut(s) 234, 321, 418
AluBI AGCT 7 cut(s) 83, 131, 143, 160, 395, 565, 694
AluI AGCT 7 cut(s) 83, 131, 143, 160, 395, 565, 694
Alw26I GTCTC 2 cut(s) 300, 547
AlwI GGATC 2 cut(s) 226, 606
AlwNI CAGNNNCTG 1 cut(s) 395
Aor13HI TCCGGA 1 cut(s) 218
AoxI GGCC 3 cut(s) 328, 345, 501
ApeKI GCWGC 3 cut(s) 212, 389, 392
ApoI RAATTY 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 530, 562
Asp700I GAANNNNTTC 1 cut(s) 23
AspS9I GGNCC 5 cut(s) 345, 422, 501, 533, 580
AsuHPI GGTGA 1 cut(s) 658
AvaII GGWCC 3 cut(s) 422, 533, 580
BalI TGGCCA 1 cut(s) 330
BbsI GAAGAC 1 cut(s) 540
BbvI GCAGC 3 cut(s) 224, 401, 404
BceAI ACGGC 1 cut(s) 332
BciT130I CCWGG 3 cut(s) 236, 323, 420
BclI TGATCA 3 cut(s) 279, 493, 615
BcoDI GTCTC 2 cut(s) 300, 547
BfaI CTAG 1 cut(s) 681
BfmI CTRYAG 2 cut(s) 180, 201
BisI GCNGC 3 cut(s) 213, 390, 393
BlsI GCNGC 3 cut(s) 214, 391, 394
Bme1390I CCNGG 3 cut(s) 236, 323, 420
Bme18I GGWCC 3 cut(s) 422, 533, 580
BmgT120I GGNCC 5 cut(s) 345, 422, 501, 533, 580
BmiI GGNNCC 3 cut(s) 346, 502, 658
BmrFI CCNGG 3 cut(s) 236, 323, 420
BmrI ACTGGG 1 cut(s) 475
BmsI GCATC 2 cut(s) 224, 405
BmuI ACTGGG 1 cut(s) 475
BpiI GAAGAC 1 cut(s) 540
BplI GAGNNNNNCTC 2 cut(s) 683, 715
BsaI GGTCTC 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 363, 519
BsaWI WCCGGW 1 cut(s) 218
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 337
Bse1I ACTGG 1 cut(s) 481
BseAI TCCGGA 1 cut(s) 218
BseBI CCWGG 3 cut(s) 236, 323, 420
BseDI CCNNGG 2 cut(s) 363, 519
BseGI GGATG 2 cut(s) 215, 618
BseLI CCNNNNNNNGG 2 cut(s) 235, 337
BseMII CTCAG 4 cut(s) 273, 369, 422, 711
BseNI ACTGG 1 cut(s) 481
BseRI GAGGAG 1 cut(s) 608
BseXI GCAGC 3 cut(s) 224, 401, 404
BsgI GTGCAG 1 cut(s) 49
BshFI GGCC 3 cut(s) 330, 347, 503
BsiSI CCGG 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 235, 337
BsmAI GTCTC 2 cut(s) 300, 547
BsnI GGCC 3 cut(s) 330, 347, 503
Bso31I GGTCTC 1 cut(s) 300
Bsp13I TCCGGA 1 cut(s) 218
Bsp143I GATC 7 cut(s) 231, 279, 461, 493, 598, 615, 661
Bsp19I CCATGG 1 cut(s) 363
BspANI GGCC 3 cut(s) 330, 347, 503
BspCNI CTCAG 4 cut(s) 272, 370, 423, 712
BspEI TCCGGA 1 cut(s) 218
BspLI GGNNCC 3 cut(s) 346, 502, 658
BspPI GGATC 2 cut(s) 226, 606
BspTNI GGTCTC 1 cut(s) 300
BsrI ACTGG 1 cut(s) 481
BssECI CCNNGG 2 cut(s) 363, 519
BssMI GATC 7 cut(s) 231, 279, 461, 493, 598, 615, 661
BssT1I CCWWGG 1 cut(s) 363
Bst2UI CCWGG 3 cut(s) 236, 323, 420
Bst4CI ACNGT 2 cut(s) 76, 558
BstAPI GCANNNNNTGC 2 cut(s) 28, 115
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 4 cut(s) 259, 378, 431, 720
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 2 cut(s) 215, 618
BstKTI GATC 7 cut(s) 234, 282, 464, 496, 601, 618, 664
BstMAI GTCTC 2 cut(s) 300, 547
BstMBI GATC 7 cut(s) 231, 279, 461, 493, 598, 615, 661
BstMWI GCNNNNNNNGC 3 cut(s) 28, 115, 401
BstNI CCWGG 3 cut(s) 236, 323, 420
BstSCI CCNGG 3 cut(s) 234, 321, 418
BstSFI CTRYAG 2 cut(s) 180, 201
BstV1I GCAGC 3 cut(s) 224, 401, 404
BstV2I GAAGAC 1 cut(s) 540
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
BsuRI GGCC 3 cut(s) 330, 347, 503
BtgI CCRYGG 1 cut(s) 363
BtsCI GGATG 2 cut(s) 215, 618
Cac8I GCNNGC 1 cut(s) 162
CaiI CAGNNNCTG 1 cut(s) 395
Cfr13I GGNCC 5 cut(s) 345, 422, 501, 533, 580
Csp6I GTAC 3 cut(s) 239, 524, 559
CviAII CATG 5 cut(s) 125, 337, 364, 667, 673
CviQI GTAC 3 cut(s) 239, 524, 559
DdeI CTNAG 4 cut(s) 259, 378, 431, 720
DpnI GATC 7 cut(s) 233, 281, 463, 495, 600, 617, 663
DpnII GATC 7 cut(s) 231, 279, 461, 493, 598, 615, 661
EaeI YGGCCR 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 300
Eco32I GATATC 1 cut(s) 354
Eco47I GGWCC 3 cut(s) 422, 533, 580
Eco57I CTGAAG 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 580
EcoRII CCWGG 3 cut(s) 234, 321, 418
EcoRV GATATC 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 5 cut(s) 128, 340, 367, 670, 676
FatI CATG 5 cut(s) 124, 336, 363, 666, 672
FbaI TGATCA 3 cut(s) 279, 493, 615
Fnu4HI GCNGC 3 cut(s) 213, 390, 393
FokI GGATG 2 cut(s) 202, 625
Fsp4HI GCNGC 3 cut(s) 213, 390, 393
FspBI CTAG 1 cut(s) 681
GluI GCNGC 3 cut(s) 213, 390, 393
HaeIII GGCC 3 cut(s) 330, 347, 503
HapII CCGG 1 cut(s) 219
Hin1II CATG 5 cut(s) 128, 340, 367, 670, 676
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HinfI GANTC 2 cut(s) 60, 222
HpaII CCGG 1 cut(s) 219
HphI GGTGA 1 cut(s) 658
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 3 cut(s) 262, 432, 661
Hpy188III TCNNGA 5 cut(s) 219, 552, 619, 681, 709
Hpy8I GTNNAC 1 cut(s) 471
HpyAV CCTTC 2 cut(s) 448, 637
HpyCH4III ACNGT 2 cut(s) 76, 558
HpyCH4IV ACGT 2 cut(s) 608, 714
HpyCH4V TGCA 4 cut(s) 66, 212, 389, 604
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 115, 401
HpyF3I CTNAG 4 cut(s) 259, 378, 431, 720
HpySE526I ACGT 2 cut(s) 608, 714
Hsp92II CATG 5 cut(s) 128, 340, 367, 670, 676
Kpn2I TCCGGA 1 cut(s) 218
Ksp22I TGATCA 3 cut(s) 279, 493, 615
Kzo9I GATC 7 cut(s) 231, 279, 461, 493, 598, 615, 661
LmnI GCTCC 3 cut(s) 128, 140, 691
Lsp1109I GCAGC 3 cut(s) 224, 401, 404
LweI GCATC 2 cut(s) 224, 405
MaeI CTAG 1 cut(s) 681
MaeII ACGT 2 cut(s) 608, 714
MaeIII GTNAC 5 cut(s) 134, 185, 193, 300, 434
MalI GATC 7 cut(s) 233, 281, 463, 495, 600, 617, 663
MboI GATC 7 cut(s) 231, 279, 461, 493, 598, 615, 661
MboII GAAGA 2 cut(s) 115, 540
MfeI CAATTG 2 cut(s) 357, 542
MflI RGATCY 1 cut(s) 598
MlsI TGGCCA 1 cut(s) 330
MluCI AATT 4 cut(s) 284, 357, 384, 542
MluNI TGGCCA 1 cut(s) 330
MmeI TCCRAC 3 cut(s) 511, 539, 726
MnlI CCTC 7 cut(s) 306, 522, 529, 571, 586, 589, 716
Mox20I TGGCCA 1 cut(s) 330
MroI TCCGGA 1 cut(s) 218
MroXI GAANNNNTTC 1 cut(s) 23
MscI TGGCCA 1 cut(s) 330
MseI TTAA 1 cut(s) 733
MslI CAYNNNNRTG 1 cut(s) 671
Msp20I TGGCCA 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 3 cut(s) 236, 323, 420
MunI CAATTG 2 cut(s) 357, 542
MvaI CCWGG 3 cut(s) 236, 323, 420
MwoI GCNNNNNNNGC 3 cut(s) 28, 115, 401
NcoI CCATGG 1 cut(s) 363
NdeII GATC 7 cut(s) 231, 279, 461, 493, 598, 615, 661
NlaIII CATG 5 cut(s) 128, 340, 367, 670, 676
NlaIV GGNNCC 3 cut(s) 346, 502, 658
NmuCI GTSAC 2 cut(s) 134, 185
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 60, 222
PflMI CCANNNNNTGG 1 cut(s) 337
PkrI GCNGC 3 cut(s) 214, 391, 394
PpuMI RGGWCCY 1 cut(s) 580
Psp1406I AACGTT 1 cut(s) 714
Psp5II RGGWCCY 1 cut(s) 580
Psp6I CCWGG 3 cut(s) 234, 321, 418
PspGI CCWGG 3 cut(s) 234, 321, 418
PspN4I GGNNCC 3 cut(s) 346, 502, 658
PspPI GGNCC 5 cut(s) 345, 422, 501, 533, 580
PspPPI RGGWCCY 1 cut(s) 580
PsrI GAACNNNNNNTAC 2 cut(s) 231, 263
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 1 cut(s) 598
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 3 cut(s) 240, 525, 560
RsaNI GTAC 3 cut(s) 239, 524, 559
RseI CAYNNNNRTG 1 cut(s) 671
SaqAI TTAA 1 cut(s) 733
SatI GCNGC 3 cut(s) 213, 390, 393
Sau3AI GATC 7 cut(s) 231, 279, 461, 493, 598, 615, 661
Sau96I GGNCC 5 cut(s) 345, 422, 501, 533, 580
ScrFI CCNGG 3 cut(s) 236, 323, 420
SfaNI GCATC 2 cut(s) 224, 405
SfcI CTRYAG 2 cut(s) 180, 201
SinI GGWCC 3 cut(s) 422, 533, 580
SmiMI CAYNNNNRTG 1 cut(s) 671
Sse9I AATT 4 cut(s) 284, 357, 384, 542
SspI AATATT 1 cut(s) 728
SspMI CTAG 1 cut(s) 681
StyD4I CCNGG 3 cut(s) 234, 321, 418
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 2 cut(s) 76, 558
TaiI ACGT 2 cut(s) 611, 717
TaqI TCGA 1 cut(s) 551
TasI AATT 4 cut(s) 284, 357, 384, 542
TfiI GAWTC 2 cut(s) 60, 222
Tru1I TTAA 1 cut(s) 733
Tru9I TTAA 1 cut(s) 733
TseFI GTSAC 2 cut(s) 134, 185
TseI GCWGC 3 cut(s) 212, 389, 392
Tsp45I GTSAC 2 cut(s) 134, 185
TspDTI ATGAA 3 cut(s) 113, 239, 651
TspGWI ACGGA 1 cut(s) 153
Van91I CCANNNNNTGG 1 cut(s) 337
VpaK11BI GGWCC 3 cut(s) 422, 533, 580
XapI RAATTY 1 cut(s) 284
XbaI TCTAGA 1 cut(s) 680
XcmI CCANNNNNNNNNTGG 2 cut(s) 95, 338
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.