Rorug02G0118300

Salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000171
Physical Location & Seq
Forward (+)
10111961 .. 10113088
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0118300.1

Sequence Viewer

Length: 450 bp
ATGAAGGGAAGGCAGAACACACCAAGGAAAGAAAGTATGCCTCATTTAGGAGTCAAAAGCCTTCTTCTTGATTCAGGTCCTGCTGAGGCAAACAAGCTTGCTGGCTCTGCAACCATTTACAACCAGCCTCTTTGCCCTAAGCCTCGCAGAGTTGGCTCTGCCATACCTGAATTCCTCAAGCCTTTAAGATGTAACAAGCACAGCCAACAAAACTCAGATGAAAGAAGTGGAATTCTGAACATGATCAGTGAAAAGGATCTAATATTTGATGGAAGAGAACCTTTATGCACCAAGTGTTCACCAACATGTTACTCAGGCTCTCCACCAGGAAGAACACCCAACCCTTTGGTTCATGATGTGCAGTTCATTCACCAAATGGAGCTTCTTTCACCATTTACCAGAACAAAGCTTTCGGATAAATTTGGATTCACATCTGCTTCTCCAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

149

Amino Acids

16.42

Weight (kDa)

9.37

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 264
AcsI RAATTY 3 cut(s) 170, 231, 419
AdeI CACNNNGTG 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 47
AflIII ACRYGT 1 cut(s) 305
AjnI CCWGG 1 cut(s) 325
AjuI GAANNNNNNNTTGG 2 cut(s) 366, 398
AluBI AGCT 3 cut(s) 97, 382, 409
AluI AGCT 3 cut(s) 97, 382, 409
AlwI GGATC 1 cut(s) 264
AlwNI CAGNNNCTG 1 cut(s) 80
ApoI RAATTY 3 cut(s) 170, 231, 419
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 3 cut(s) 291, 362, 381
AvaII GGWCC 1 cut(s) 77
BbvCI CCTCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 327
BclI TGATCA 1 cut(s) 243
Bme1390I CCNGG 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 426
Bpu10I CCTNAGC 2 cut(s) 84, 138
BpuEI CTTGAG 1 cut(s) 161
BsaBI GATNNNNATC 1 cut(s) 430
BsaJI CCNNGG 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 443
Bse8I GATNNNNATC 1 cut(s) 430
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 23
BseJI GATNNNNATC 1 cut(s) 430
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 3 cut(s) 75, 228, 327
BseNI ACTGG 1 cut(s) 443
BsgI GTGCAG 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 47
Bsp143I GATC 2 cut(s) 243, 256
BspCNI CTCAG 3 cut(s) 76, 227, 326
BspHI TCATGA 1 cut(s) 352
BspPI GGATC 1 cut(s) 264
BsrI ACTGG 1 cut(s) 443
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 2 cut(s) 243, 256
BssT1I CCWWGG 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 268
BstC8I GCNNGC 2 cut(s) 99, 103
BstDEI CTNAG 4 cut(s) 84, 138, 214, 313
BstENI CCTNNNNNAGG 1 cut(s) 45
BstKTI GATC 2 cut(s) 246, 259
BstMBI GATC 2 cut(s) 243, 256
BstMWI GCNNNNNNNGC 2 cut(s) 107, 153
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 325
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 346
BstYI RGATCY 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 253
Cac8I GCNNGC 2 cut(s) 99, 103
CaiI CAGNNNCTG 1 cut(s) 80
CciI TCATGA 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 77
CviAII CATG 3 cut(s) 241, 306, 353
DdeI CTNAG 4 cut(s) 84, 138, 214, 313
DpnI GATC 2 cut(s) 245, 258
DpnII GATC 2 cut(s) 243, 256
DraIII CACNNNGTG 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 77
EcoNI CCTNNNNNAGG 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 77
EcoRI GAATTC 2 cut(s) 170, 231
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 3 cut(s) 244, 309, 356
FaiI YATR 7 cut(s) 38, 164, 242, 286, 307, 354, 448
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FatI CATG 3 cut(s) 240, 305, 352
FbaI TGATCA 1 cut(s) 243
GsuI CTGGAG 1 cut(s) 426
Hin1II CATG 3 cut(s) 244, 309, 356
HindIII AAGCTT 2 cut(s) 95, 407
HinfI GANTC 3 cut(s) 51, 71, 426
HphI GGTGA 3 cut(s) 291, 362, 381
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 3 cut(s) 217, 237, 415
Hpy188III TCNNGA 2 cut(s) 68, 353
Hpy8I GTNNAC 1 cut(s) 299
HpyAV CCTTC 2 cut(s) 3, 71
HpyCH4V TGCA 3 cut(s) 110, 288, 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 153
HpyF3I CTNAG 4 cut(s) 84, 138, 214, 313
Hsp92II CATG 3 cut(s) 244, 309, 356
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 2 cut(s) 243, 256
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 9 cut(s) 60, 87, 93, 137, 180, 300, 312, 339, 412
MaeIII GTNAC 2 cut(s) 191, 308
MalI GATC 2 cut(s) 245, 258
MboI GATC 2 cut(s) 243, 256
MboII GAAGA 3 cut(s) 56, 285, 342
MflI RGATCY 1 cut(s) 256
MluCI AATT 3 cut(s) 170, 231, 419
MlyI GAGTC 1 cut(s) 60
MnlI CCTC 5 cut(s) 51, 79, 138, 153, 185
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 304
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 2 cut(s) 107, 153
NdeII GATC 2 cut(s) 243, 256
NlaIII CATG 3 cut(s) 244, 309, 356
NspI RCATGY 1 cut(s) 309
PagI TCATGA 1 cut(s) 352
PciI ACATGT 1 cut(s) 305
PfeI GAWTC 2 cut(s) 71, 426
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PpuMI RGGWCCY 1 cut(s) 77
PscI ACATGT 1 cut(s) 305
Psp5II RGGWCCY 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspPI GGNCC 1 cut(s) 77
PspPPI RGGWCCY 1 cut(s) 77
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 304
SaqAI TTAA 1 cut(s) 185
Sau3AI GATC 2 cut(s) 243, 256
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 327
SetI ASST 6 cut(s) 79, 99, 169, 283, 384, 411
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 3 cut(s) 170, 231, 419
SspI AATATT 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 1 cut(s) 23
TasI AATT 3 cut(s) 170, 231, 419
TfiI GAWTC 2 cut(s) 71, 426
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 1 cut(s) 253
TspDTI ATGAA 4 cut(s) 17, 234, 341, 355
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 77
XagI CCTNNNNNAGG 1 cut(s) 45
XapI RAATTY 3 cut(s) 170, 231, 419
XceI RCATGY 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.