Rh2BG173800

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000171
Physical Location & Seq
Forward (+)
15265003 .. 15265272
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG173800.1

Sequence Viewer

Length: 270 bp
ATGAAAATGGAGCATACAAAGCATTTTATTCTGGTTCATAGTTCTGGTCACGGAGCATGGTGTTGGTATAAGTTGGCAACTCTATTGAACTCCACAGGTCACAATGTTACAACTCTAGACCTTCCGGCATCCGAGATCAACCAAACACAGCAACAACAACTTCATTTGTTTTCCGACTACACTGAGCCATTGTTTGAATTTCTGGGGTCTCTGCAACCAAAAGAGAAGGGTATCCTGGTCGGTCACAGCATGGGTGGCCCTGTCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

89

Amino Acids

9.97

Weight (kDa)

6.34

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 8 - 88 3.9e-08 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 10 - 88 3.1e-09 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 197
AgsI TTSAA 2 cut(s) 88, 197
AjnI CCWGG 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 213
AoxI GGCC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 236
BciVI GTATCC 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 1 cut(s) 116
BfuI GTATCC 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 213
BseBI CCWGG 1 cut(s) 236
BseGI GGATG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 174
BshFI GGCC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 213
BsnI GGCC 1 cut(s) 258
Bso31I GGTCTC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 135
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 213
BssMI GATC 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 128
BstKTI GATC 1 cut(s) 138
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 1 cut(s) 135
BstMWI GCNNNNNNNGC 2 cut(s) 19, 255
BstNI CCWGG 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 234
BsuI GTATCC 1 cut(s) 242
BsuRI GGCC 1 cut(s) 258
BtsCI GGATG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 257
CviAII CATG 2 cut(s) 57, 250
CviJI RGCY 2 cut(s) 187, 258
CviKI_1 RGCY 2 cut(s) 187, 258
DdeI CTNAG 1 cut(s) 183
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 234
FaeI CATG 2 cut(s) 60, 253
FaiI YATR 7 cut(s) 15, 39, 58, 69, 251, 266, 268
FatI CATG 2 cut(s) 56, 249
FokI GGATG 1 cut(s) 115
FspBI CTAG 1 cut(s) 116
HaeIII GGCC 1 cut(s) 258
HapII CCGG 1 cut(s) 125
Hin1II CATG 2 cut(s) 60, 253
HpaII CCGG 1 cut(s) 125
Hpy188I TCNGA 2 cut(s) 133, 175
Hpy188III TCNNGA 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 131, 220
HpyCH4V TGCA 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 255
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 2 cut(s) 60, 253
Kzo9I GATC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 10, 53
LpnPI CCDG 7 cut(s) 17, 30, 81, 138, 188, 221, 248
LweI GCATC 1 cut(s) 137
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 4 cut(s) 47, 98, 106, 242
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MluCI AATT 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 198
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 236
MvaI CCWGG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 19, 255
NdeII GATC 1 cut(s) 135
NlaIII CATG 2 cut(s) 60, 253
NmuCI GTSAC 3 cut(s) 47, 98, 242
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspPI GGNCC 1 cut(s) 257
Sau3AI GATC 1 cut(s) 135
Sau96I GGNCC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 236
SetI ASST 2 cut(s) 100, 123
SfaNI GCATC 1 cut(s) 137
Sse9I AATT 1 cut(s) 197
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 234
TaqII GACCGA 1 cut(s) 230
TasI AATT 1 cut(s) 197
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 3 cut(s) 47, 98, 242
Tsp45I GTSAC 3 cut(s) 47, 98, 242
TspDTI ATGAA 3 cut(s) 17, 26, 152
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 1 cut(s) 187
XapI RAATTY 1 cut(s) 197
XbaI TCTAGA 1 cut(s) 115
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.