FvH4_1g14900

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000171
Physical Location & Seq
Forward (+)
8344181 .. 8346096
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14900.t2

Sequence Viewer

Length: 1020 bp
ATGGTGTTTTTTACATGCCAAAATCAGACTGAGGCCAAGTACTGTACGATACTACATGACTGTACATCAGCTATAAAATCCAAGCTAAAACTAAAAGAGAGCAAAGAGAAAATGGAGCGCATAAGACCTGTGAATGAAGTTGTGTATTTTCTTATATTTCTTAGCTTGGTAGCAACTTGCAGTACCATTAGCGCAACTCAGTCATGTATAACGGAATCATCAAAGATTTGTGCAGCTTCTTCTTCTTCCTGCCAGATCCCCGTTGGGAAGAAGCACTTCGTGTTGATTCACGGAGCCGGTCACGGAGCGTGGTCTTGGTACAAGGTGGCGGCGTTACTGAAATCTTCCGGTCATAATGTAACGGCTCTGGACTTGGGAGCATCAGGAATCAATCCGATCCAGGTTCAGCAACTCCCTTCGTTCTCCGACTTCGTTGAACCGTTGACAAAGATCATGGTGTCACTGCCGCCAAAAGAAAGGGTTATTCTGGTGTCTCACAGCATGGCCGGAGCTACAATAGCGGTTTTCATGGAGAAGTTCCCTGAGAAAATTGCGGCAGCCGTGTATGTCTCTGCCTTTATGTCAGGTCCTACTCTCAATTACTCCACCATTTTTACAGAGATAAACAAACGATTGGATTATATGGATTCTGAATTTAGATATGACAACGGGACCAAAGATTCTGCAACCTCCTTTCGCTTTGGGCCTAAGGTCTTGGAAAGCTTCTACCAGCTATCCCCACCAGAGGATTTATCACTAGGAATTTCGTTGGTGAGATTTTCCCCTCTATACGACTACGATCTTATGAAACTCACAGAGGAGAAATATGGATTGGTTCCCAGAATATTCATCGTGGCGGATCAAGACCGTGCAATAGTGTTGGACGTGCAAAATTTCATGATCAAGAATAATCCACCAGATGAAGTCAGAGTGATCAGTGGTTCTGATCACATGGTCATGTTCTGTAGACCAGTGGAGCTCTTCTCCCCCCTACAGAATATTGCTGAGAAATATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

340

Amino Acids

37.83

Weight (kDa)

7.03

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 91 - 204 3.2e-10 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 92 - 224 1.1e-15 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 93 - 206 1.5e-11 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 967
AciI CCGC 5 cut(s) 329, 467, 521, 554, 857
AclWI GGATC 3 cut(s) 250, 391, 867
AcoI YGGCCR 1 cut(s) 504
AcsI RAATTY 3 cut(s) 653, 762, 892
AdeI CACNNNGTG 1 cut(s) 280
AfaI GTAC 5 cut(s) 41, 46, 64, 184, 320
AfiI CCNNNNNNNGG 1 cut(s) 745
AgsI TTSAA 1 cut(s) 437
AjiI CACGTC 1 cut(s) 886
AjnI CCWGG 1 cut(s) 399
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
AluBI AGCT 8 cut(s) 71, 85, 165, 236, 512, 723, 733, 979
AluI AGCT 8 cut(s) 71, 85, 165, 236, 512, 723, 733, 979
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 2 cut(s) 498, 574
AlwI GGATC 3 cut(s) 250, 391, 867
AoxI GGCC 3 cut(s) 33, 504, 704
ApeKI GCWGC 2 cut(s) 233, 557
ApoI RAATTY 3 cut(s) 653, 762, 892
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 2 cut(s) 120, 194
AspS9I GGNCC 3 cut(s) 587, 672, 704
AsuHPI GGTGA 1 cut(s) 784
AvaII GGWCC 2 cut(s) 587, 672
AxyI CCTNAGG 1 cut(s) 708
BanII GRGCYC 1 cut(s) 981
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 2 cut(s) 245, 569
BceAI ACGGC 2 cut(s) 378, 545
BciT130I CCWGG 1 cut(s) 401
BclI TGATCA 3 cut(s) 900, 933, 946
BcoDI GTCTC 2 cut(s) 498, 574
BfaI CTAG 1 cut(s) 758
BfmI CTRYAG 2 cut(s) 964, 992
BisI GCNGC 5 cut(s) 234, 330, 467, 555, 558
BlsI GCNGC 5 cut(s) 235, 331, 468, 556, 559
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 401
Bme18I GGWCC 2 cut(s) 587, 672
BmgBI CACGTC 1 cut(s) 886
BmgT120I GGNCC 3 cut(s) 587, 672, 704
BmiI GGNNCC 3 cut(s) 295, 673, 837
BmrFI CCNGG 1 cut(s) 401
BmsI GCATC 1 cut(s) 389
BplI GAGNNNNNCTC 2 cut(s) 968, 1000
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 1 cut(s) 745
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 971
Bse21I CCTNAGG 1 cut(s) 708
BseBI CCWGG 1 cut(s) 401
BseLI CCNNNNNNNGG 1 cut(s) 745
BseMII CTCAG 4 cut(s) 21, 212, 534, 996
BseNI ACTGG 1 cut(s) 971
BseRI GAGGAG 1 cut(s) 833
BseXI GCAGC 2 cut(s) 245, 569
BsgI GTGCAG 1 cut(s) 252
BshFI GGCC 3 cut(s) 35, 506, 706
BsiHKAI GWGCWC 1 cut(s) 981
BsiSI CCGG 3 cut(s) 297, 348, 507
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 1 cut(s) 745
BsmAI GTCTC 2 cut(s) 498, 574
BsmFI GGGAC 1 cut(s) 685
BsnI GGCC 3 cut(s) 35, 506, 706
Bsp1286I GDGCHC 1 cut(s) 981
Bsp1407I TGTACA 1 cut(s) 62
Bsp143I GATC 8 cut(s) 255, 396, 450, 799, 859, 900, 933, 946
BspACI CCGC 5 cut(s) 329, 467, 521, 554, 857
BspANI GGCC 3 cut(s) 35, 506, 706
BspCNI CTCAG 4 cut(s) 22, 211, 535, 997
BspHI TCATGA 1 cut(s) 897
BspLI GGNNCC 3 cut(s) 295, 673, 837
BspPI GGATC 3 cut(s) 250, 391, 867
BspQI GCTCTTC 1 cut(s) 986
BsrFI RCCGGY 1 cut(s) 296
BsrGI TGTACA 1 cut(s) 62
BsrI ACTGG 1 cut(s) 971
BssAI RCCGGY 1 cut(s) 296
BssMI GATC 8 cut(s) 255, 396, 450, 799, 859, 900, 933, 946
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 4 cut(s) 44, 62, 441, 869
Bst6I CTCTTC 1 cut(s) 986
BstAUI TGTACA 1 cut(s) 62
BstDEI CTNAG 6 cut(s) 30, 161, 198, 543, 708, 1005
BstHHI GCGC 2 cut(s) 120, 194
BstKTI GATC 8 cut(s) 258, 399, 453, 802, 862, 903, 936, 949
BstMAI GTCTC 2 cut(s) 498, 574
BstMBI GATC 8 cut(s) 255, 396, 450, 799, 859, 900, 933, 946
BstMWI GCNNNNNNNGC 1 cut(s) 518
BstNI CCWGG 1 cut(s) 401
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 399
BstSFI CTRYAG 2 cut(s) 964, 992
BstV1I GCAGC 2 cut(s) 245, 569
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
Bsu36I CCTNAGG 1 cut(s) 708
BsuRI GGCC 3 cut(s) 35, 506, 706
BtrI CACGTC 1 cut(s) 886
BtsI GCAGTG 1 cut(s) 461
BtsIMutI CAGTG 3 cut(s) 461, 943, 978
CciI TCATGA 1 cut(s) 897
CfoI GCGC 2 cut(s) 120, 194
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 3 cut(s) 587, 672, 704
Csp6I GTAC 5 cut(s) 40, 45, 63, 183, 319
CviAII CATG 9 cut(s) 15, 56, 204, 454, 502, 529, 898, 952, 958
CviQI GTAC 5 cut(s) 40, 45, 63, 183, 319
DdeI CTNAG 6 cut(s) 30, 161, 198, 543, 708, 1005
DpnI GATC 8 cut(s) 257, 398, 452, 801, 861, 902, 935, 948
DpnII GATC 8 cut(s) 255, 396, 450, 799, 859, 900, 933, 946
DraIII CACNNNGTG 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 504
Eam1104I CTCTTC 1 cut(s) 986
EarI CTCTTC 1 cut(s) 986
EciI GGCGGA 1 cut(s) 872
Ecl136II GAGCTC 1 cut(s) 979
Eco24I GRGCYC 1 cut(s) 981
Eco47I GGWCC 2 cut(s) 587, 672
Eco53kI GAGCTC 1 cut(s) 979
Eco81I CCTNAGG 1 cut(s) 708
EcoICRI GAGCTC 1 cut(s) 979
EcoO109I RGGNCCY 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 399
EcoT38I GRGCYC 1 cut(s) 981
FaeI CATG 9 cut(s) 18, 59, 207, 457, 505, 532, 901, 955, 961
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 1 cut(s) 685
FatI CATG 9 cut(s) 14, 55, 203, 453, 501, 528, 897, 951, 957
FbaI TGATCA 3 cut(s) 900, 933, 946
FblI GTMKAC 1 cut(s) 967
Fnu4HI GCNGC 5 cut(s) 234, 330, 467, 555, 558
FriOI GRGCYC 1 cut(s) 981
Fsp4HI GCNGC 5 cut(s) 234, 330, 467, 555, 558
FspBI CTAG 1 cut(s) 758
GlaI GCGC 2 cut(s) 119, 193
GluI GCNGC 5 cut(s) 234, 330, 467, 555, 558
HaeIII GGCC 3 cut(s) 35, 506, 706
HapII CCGG 3 cut(s) 297, 348, 507
HhaI GCGC 2 cut(s) 120, 194
Hin1II CATG 9 cut(s) 18, 59, 207, 457, 505, 532, 901, 955, 961
Hin6I GCGC 2 cut(s) 118, 192
HinP1I GCGC 2 cut(s) 118, 192
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HindIII AAGCTT 1 cut(s) 721
HinfI GANTC 5 cut(s) 215, 286, 387, 647, 680
HpaII CCGG 3 cut(s) 297, 348, 507
HphI GGTGA 1 cut(s) 784
Hpy166II GTNNAC 2 cut(s) 444, 968
Hpy188I TCNGA 6 cut(s) 27, 396, 427, 652, 929, 946
Hpy188III TCNNGA 6 cut(s) 368, 384, 863, 898, 904, 1017
Hpy8I GTNNAC 2 cut(s) 444, 968
HpyAV CCTTC 1 cut(s) 426
HpyCH4III ACNGT 4 cut(s) 44, 62, 441, 869
HpyCH4IV ACGT 1 cut(s) 885
HpyCH4V TGCA 5 cut(s) 180, 233, 686, 872, 889
HpyF10VI GCNNNNNNNGC 1 cut(s) 518
HpyF3I CTNAG 6 cut(s) 30, 161, 198, 543, 708, 1005
HpySE526I ACGT 1 cut(s) 885
Hsp92II CATG 9 cut(s) 18, 59, 207, 457, 505, 532, 901, 955, 961
HspAI GCGC 2 cut(s) 118, 192
Ksp22I TGATCA 3 cut(s) 900, 933, 946
Kzo9I GATC 8 cut(s) 255, 396, 450, 799, 859, 900, 933, 946
LguI GCTCTTC 1 cut(s) 986
LmnI GCTCC 6 cut(s) 115, 293, 305, 377, 509, 976
Lsp1109I GCAGC 2 cut(s) 245, 569
LweI GCATC 1 cut(s) 389
MaeI CTAG 1 cut(s) 758
MaeII ACGT 1 cut(s) 885
MaeIII GTNAC 4 cut(s) 299, 333, 358, 459
MalI GATC 8 cut(s) 257, 398, 452, 801, 861, 902, 935, 948
MboI GATC 8 cut(s) 255, 396, 450, 799, 859, 900, 933, 946
MboII GAAGA 6 cut(s) 231, 234, 237, 280, 336, 973
MflI RGATCY 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 981
MluCI AATT 5 cut(s) 549, 598, 653, 762, 892
MmeI TCCRAC 2 cut(s) 450, 861
MnlI CCTC 5 cut(s) 25, 700, 739, 795, 811
MroXI GAANNNNTTC 1 cut(s) 275
MslI CAYNNNNRTG 1 cut(s) 956
MspI CCGG 3 cut(s) 297, 348, 507
MspR9I CCNGG 1 cut(s) 401
MvaI CCWGG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 518
NdeII GATC 8 cut(s) 255, 396, 450, 799, 859, 900, 933, 946
NlaIII CATG 9 cut(s) 18, 59, 207, 457, 505, 532, 901, 955, 961
NlaIV GGNNCC 3 cut(s) 295, 673, 837
NmuCI GTSAC 2 cut(s) 299, 459
NspI RCATGY 1 cut(s) 18
PagI TCATGA 1 cut(s) 897
PciSI GCTCTTC 1 cut(s) 986
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 5 cut(s) 215, 286, 387, 647, 680
PkrI GCNGC 5 cut(s) 235, 331, 468, 556, 559
PpuMI RGGWCCY 1 cut(s) 587
Psp124BI GAGCTC 1 cut(s) 981
Psp5II RGGWCCY 1 cut(s) 587
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 3 cut(s) 295, 673, 837
PspPI GGNCC 3 cut(s) 587, 672, 704
PspPPI RGGWCCY 1 cut(s) 587
PsuI RGATCY 1 cut(s) 255
RsaI GTAC 5 cut(s) 41, 46, 64, 184, 320
RsaNI GTAC 5 cut(s) 40, 45, 63, 183, 319
RseI CAYNNNNRTG 1 cut(s) 956
SacI GAGCTC 1 cut(s) 981
SapI GCTCTTC 1 cut(s) 986
SatI GCNGC 5 cut(s) 234, 330, 467, 555, 558
Sau3AI GATC 8 cut(s) 255, 396, 450, 799, 859, 900, 933, 946
Sau96I GGNCC 3 cut(s) 587, 672, 704
ScaI AGTACT 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 401
SduI GDGCHC 1 cut(s) 981
SfaNI GCATC 1 cut(s) 389
SfcI CTRYAG 2 cut(s) 964, 992
SinI GGWCC 2 cut(s) 587, 672
SmiMI CAYNNNNRTG 1 cut(s) 956
Sse9I AATT 5 cut(s) 549, 598, 653, 762, 892
SsiI CCGC 5 cut(s) 329, 467, 521, 554, 857
SspI AATATT 3 cut(s) 846, 1000, 1013
SspMI CTAG 1 cut(s) 758
SstI GAGCTC 1 cut(s) 981
StyD4I CCNGG 1 cut(s) 399
TaaI ACNGT 4 cut(s) 44, 62, 441, 869
TaiI ACGT 1 cut(s) 888
TasI AATT 5 cut(s) 549, 598, 653, 762, 892
TatI WGTACW 2 cut(s) 39, 62
TauI GCSGC 3 cut(s) 332, 469, 557
TfiI GAWTC 5 cut(s) 215, 286, 387, 647, 680
TscAI CASTG 3 cut(s) 468, 943, 978
TseFI GTSAC 2 cut(s) 299, 459
TseI GCWGC 2 cut(s) 233, 557
Tsp45I GTSAC 2 cut(s) 299, 459
TspDTI ATGAA 6 cut(s) 150, 517, 821, 838, 886, 936
TspGWI ACGGA 3 cut(s) 227, 306, 318
TspRI CASTG 3 cut(s) 468, 943, 978
VpaK11BI GGWCC 2 cut(s) 587, 672
XapI RAATTY 3 cut(s) 653, 762, 892
XceI RCATGY 1 cut(s) 18
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 967
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 1 cut(s) 758
ZrmI AGTACT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.