Rh1CG097300

salicylic acid-binding protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
20760868 .. 20761838
971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG097300.1

Sequence Viewer

Length: 483 bp
ATGGAAAATATGAGAGTGAAGCATTTTGCTTTGCCTTTTCTTGTGCTTCTTTGCTTGGCAAGAATCTGTAGCAATAGTCTTACAGCTGATCACTATCCAGACCAAATCCTCTTTGGGAAGAAGCATTTTGTGCTGGTTCATGGAGCCGGTCACGGAGCTTGGTGTTGGTATAAGTTGGCAACTCTATTGACCTCCACAGGTCACAATGTTACAACACTAGACCTTGCAGCATCTGGGATCAACCAGATCCAGGTAGAGCAAGTTCATTTGTTCTCCGAGTACGTTGAGCCATTGATCAGTTTTCTGGGGTCTCTTACGCCAAAGGAGAGGGTTATCCTGGTTGGCCACAGCTTGGGTGGAGCCGTGATATCAATTGCCATGGAGAGGTTCCCTGAGAAAATTGCTGCTGCTGTATATGCTACTGCTGTGATGCCAGGATCTAACACTAGCATTGTCATTGCTGAGACCTTCCCCAACATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

160

Amino Acids

17.43

Weight (kDa)

6.69

Isoelectric Point (pI)

25.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 41 - 144 5.8e-11 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 42 - 150 4.1e-15 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 43 - 147 5.7e-14 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 352
AclWI GGATC 3 cut(s) 241, 245, 445
AcoI YGGCCR 1 cut(s) 343
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 3 cut(s) 250, 352, 384
AjnI CCWGG 3 cut(s) 249, 336, 433
AluBI AGCT 3 cut(s) 86, 158, 351
AluI AGCT 3 cut(s) 86, 158, 351
Alw26I GTCTC 2 cut(s) 315, 458
AlwI GGATC 3 cut(s) 241, 245, 445
AlwNI CAGNNNCTG 1 cut(s) 233
AoxI GGCC 1 cut(s) 343
ApeKI GCWGC 3 cut(s) 227, 404, 407
BalI TGGCCA 1 cut(s) 345
BbvI GCAGC 3 cut(s) 239, 391, 394
BceAI ACGGC 1 cut(s) 347
BciT130I CCWGG 3 cut(s) 251, 338, 435
BclI TGATCA 2 cut(s) 88, 294
BcoDI GTCTC 2 cut(s) 315, 458
BfaI CTAG 2 cut(s) 218, 447
BfmI CTRYAG 1 cut(s) 67
BisI GCNGC 3 cut(s) 228, 405, 408
BlsI GCNGC 3 cut(s) 229, 406, 409
Bme1390I CCNGG 3 cut(s) 251, 338, 435
BmiI GGNNCC 3 cut(s) 145, 361, 389
BmrFI CCNGG 3 cut(s) 251, 338, 435
BmsI GCATC 2 cut(s) 239, 420
BsaBI GATNNNNATC 1 cut(s) 93
BsaI GGTCTC 2 cut(s) 315, 458
BsaJI CCNNGG 1 cut(s) 378
Bsc4I CCNNNNNNNGG 3 cut(s) 250, 352, 384
Bse118I RCCGGY 1 cut(s) 146
Bse3DI GCAATG 1 cut(s) 456
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 3 cut(s) 251, 338, 435
BseDI CCNNGG 1 cut(s) 378
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 3 cut(s) 250, 352, 384
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 2 cut(s) 384, 453
BseXI GCAGC 3 cut(s) 239, 391, 394
BshFI GGCC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 3 cut(s) 250, 352, 384
BsmAI GTCTC 2 cut(s) 315, 458
BsnI GGCC 1 cut(s) 345
Bso31I GGTCTC 2 cut(s) 315, 458
Bsp143I GATC 5 cut(s) 88, 237, 246, 294, 437
Bsp19I CCATGG 1 cut(s) 378
BspANI GGCC 1 cut(s) 345
BspCNI CTCAG 2 cut(s) 385, 454
BspLI GGNNCC 3 cut(s) 145, 361, 389
BspPI GGATC 3 cut(s) 241, 245, 445
BspTNI GGTCTC 2 cut(s) 315, 458
BsrDI GCAATG 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 5 cut(s) 88, 237, 246, 294, 437
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 3 cut(s) 251, 338, 435
BstAPI GCANNNNNTGC 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 393, 462
BstDSI CCRYGG 1 cut(s) 378
BstKTI GATC 5 cut(s) 91, 240, 249, 297, 440
BstMAI GTCTC 2 cut(s) 315, 458
BstMBI GATC 5 cut(s) 88, 237, 246, 294, 437
BstMWI GCNNNNNNNGC 2 cut(s) 130, 416
BstNI CCWGG 3 cut(s) 251, 338, 435
BstSCI CCNGG 3 cut(s) 249, 336, 433
BstSFI CTRYAG 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 239, 391, 394
BstX2I RGATCY 2 cut(s) 246, 437
BstYI RGATCY 2 cut(s) 246, 437
BsuRI GGCC 1 cut(s) 345
BtgI CCRYGG 1 cut(s) 378
CaiI CAGNNNCTG 1 cut(s) 233
Cfr10I RCCGGY 1 cut(s) 146
Csp6I GTAC 1 cut(s) 280
CviAII CATG 2 cut(s) 140, 379
CviJI RGCY 7 cut(s) 86, 146, 158, 289, 345, 351, 362
CviKI_1 RGCY 7 cut(s) 86, 146, 158, 289, 345, 351, 362
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 2 cut(s) 393, 462
DpnI GATC 5 cut(s) 90, 239, 248, 296, 439
DpnII GATC 5 cut(s) 88, 237, 246, 294, 437
EaeI YGGCCR 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 378
Eco31I GGTCTC 2 cut(s) 315, 458
Eco32I GATATC 1 cut(s) 369
EcoRII CCWGG 3 cut(s) 249, 336, 433
EcoRV GATATC 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 2 cut(s) 143, 382
FaiI YATR 6 cut(s) 11, 141, 171, 380, 415, 417
FatI CATG 2 cut(s) 139, 378
FbaI TGATCA 2 cut(s) 88, 294
Fnu4HI GCNGC 3 cut(s) 228, 405, 408
Fsp4HI GCNGC 3 cut(s) 228, 405, 408
FspBI CTAG 2 cut(s) 218, 447
GluI GCNGC 3 cut(s) 228, 405, 408
HaeIII GGCC 1 cut(s) 345
HapII CCGG 1 cut(s) 147
Hin1II CATG 2 cut(s) 143, 382
HinfI GANTC 1 cut(s) 63
HpaII CCGG 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 478
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 416
HpyF3I CTNAG 2 cut(s) 393, 462
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 2 cut(s) 143, 382
Ksp22I TGATCA 2 cut(s) 88, 294
Kzo9I GATC 5 cut(s) 88, 237, 246, 294, 437
LmnI GCTCC 3 cut(s) 143, 155, 359
Lsp1109I GCAGC 3 cut(s) 239, 391, 394
LweI GCATC 2 cut(s) 239, 420
MaeI CTAG 2 cut(s) 218, 447
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 3 cut(s) 149, 200, 208
MalI GATC 5 cut(s) 90, 239, 248, 296, 439
MboI GATC 5 cut(s) 88, 237, 246, 294, 437
MboII GAAGA 1 cut(s) 130
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 2 cut(s) 246, 437
MlsI TGGCCA 1 cut(s) 345
MluCI AATT 2 cut(s) 372, 399
MluNI TGGCCA 1 cut(s) 345
MnlI CCTC 4 cut(s) 119, 202, 321, 378
Mox20I TGGCCA 1 cut(s) 345
MscI TGGCCA 1 cut(s) 345
MseI TTAA 1 cut(s) 481
Msp20I TGGCCA 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 3 cut(s) 251, 338, 435
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 3 cut(s) 251, 338, 435
MwoI GCNNNNNNNGC 2 cut(s) 130, 416
NcoI CCATGG 1 cut(s) 378
NdeII GATC 5 cut(s) 88, 237, 246, 294, 437
NlaIII CATG 2 cut(s) 143, 382
NlaIV GGNNCC 3 cut(s) 145, 361, 389
NmuCI GTSAC 2 cut(s) 149, 200
PfeI GAWTC 1 cut(s) 63
PflMI CCANNNNNTGG 1 cut(s) 352
PkrI GCNGC 3 cut(s) 229, 406, 409
Psp6I CCWGG 3 cut(s) 249, 336, 433
PspGI CCWGG 3 cut(s) 249, 336, 433
PspN4I GGNNCC 3 cut(s) 145, 361, 389
PsrI GAACNNNNNNTAC 2 cut(s) 246, 278
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 2 cut(s) 246, 437
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 481
SatI GCNGC 3 cut(s) 228, 405, 408
Sau3AI GATC 5 cut(s) 88, 237, 246, 294, 437
ScrFI CCNGG 3 cut(s) 251, 338, 435
SfaNI GCATC 2 cut(s) 239, 420
SfcI CTRYAG 1 cut(s) 67
Sse9I AATT 2 cut(s) 372, 399
SspMI CTAG 2 cut(s) 218, 447
StyD4I CCNGG 3 cut(s) 249, 336, 433
StyI CCWWGG 1 cut(s) 378
TaiI ACGT 1 cut(s) 285
TasI AATT 2 cut(s) 372, 399
TfiI GAWTC 1 cut(s) 63
Tru1I TTAA 1 cut(s) 481
Tru9I TTAA 1 cut(s) 481
TseFI GTSAC 2 cut(s) 149, 200
TseI GCWGC 3 cut(s) 227, 404, 407
Tsp45I GTSAC 2 cut(s) 149, 200
TspDTI ATGAA 2 cut(s) 128, 254
TspGWI ACGGA 1 cut(s) 168
Van91I CCANNNNNTGG 1 cut(s) 352
XcmI CCANNNNNNNNNTGG 2 cut(s) 110, 353
XspI CTAG 2 cut(s) 218, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.