Rh2AG166800

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000171
Physical Location & Seq
Forward (+)
15665177 .. 15665900
724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG166800.1

Sequence Viewer

Length: 447 bp
ATGGAAAGGTTCCCTGAGAAAATTGCTGCTGTTGTATTTGCCACTGCTTTCATGCCCGGTCCTGATTTCAGTTACTTGACCATTTATCAAAAGGGTGTCGACAATCCTCCAACCGCGATTATCTTTGGGCCGAAGCAATTGTCGACAAGGCTGTATCAGCTATCACCACCAGAGGATTTAACACCAGCATTGTCTTTGGTGAGAATTTTTCCTCTGTTTAAAGAAGACATAAAACTCGCCAAGGAGAAATATGGATCGGTTGCAAGAGTATTCATCGTCGACCGTGACCAAGACCTTTCAATAGAAGAGGATGTGCAAATGTGGATGATTGAGAAAAATCTACCAAATCAAGTGAAAGTGATAAATGGTTCTGATCACATGGTCATGTTCTCTAGACCACTAGAGCTGTTCTCCAACCTCCTCCAGGTTGCTGAGAAATATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

148

Amino Acids

16.9

Weight (kDa)

5.19

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 99, 143, 279
AccII CGCG 1 cut(s) 116
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 262
AcsI RAATTY 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 424
AgsI TTSAA 1 cut(s) 300
AjnI CCWGG 1 cut(s) 423
AluBI AGCT 2 cut(s) 160, 406
AluI AGCT 2 cut(s) 160, 406
AlwI GGATC 1 cut(s) 262
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 204
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspS9I GGNCC 2 cut(s) 59, 128
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 156, 211
AvaII GGWCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 13
BciT130I CCWGG 1 cut(s) 425
BclI TGATCA 1 cut(s) 373
BcnI CCSGG 1 cut(s) 57
BfaI CTAG 2 cut(s) 393, 401
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 2 cut(s) 57, 425
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 59, 128
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 2 cut(s) 57, 425
BpiI GAAGAC 1 cut(s) 231
BplI GAGNNNNNCTC 2 cut(s) 395, 427
BpmI CTGGAG 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 424
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 2 cut(s) 316, 330
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMII CTCAG 2 cut(s) 6, 423
BseRI GAGGAG 1 cut(s) 410
BseXI GCAGC 1 cut(s) 13
Bsh1236I CGCG 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 1 cut(s) 130
BsiEI CGRYCG 1 cut(s) 283
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 424
BsnI GGCC 1 cut(s) 130
Bsp143I GATC 2 cut(s) 254, 373
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 2 cut(s) 7, 424
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 11
BspPI GGATC 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 2 cut(s) 254, 373
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 1 cut(s) 284
Bst6I CTCTTC 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 15, 432
BstENI CCTNNNNNAGG 1 cut(s) 422
BstF5I GGATG 2 cut(s) 316, 330
BstFNI CGCG 1 cut(s) 116
BstKTI GATC 2 cut(s) 257, 376
BstMBI GATC 2 cut(s) 254, 373
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 425
BstSCI CCNGG 2 cut(s) 55, 423
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 130
BtsCI GGATG 2 cut(s) 316, 330
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 59, 128
CviAII CATG 3 cut(s) 52, 379, 385
CviJI RGCY 4 cut(s) 130, 151, 160, 406
CviKI_1 RGCY 4 cut(s) 130, 151, 160, 406
DdeI CTNAG 2 cut(s) 15, 432
DpnI GATC 2 cut(s) 256, 375
DpnII GATC 2 cut(s) 254, 373
DraI TTTAAA 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 59
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 423
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 3 cut(s) 55, 382, 388
FaiI YATR 6 cut(s) 53, 230, 252, 380, 386, 441
FatI CATG 3 cut(s) 51, 378, 384
FbaI TGATCA 1 cut(s) 373
FblI GTMKAC 3 cut(s) 99, 143, 279
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 2 cut(s) 323, 337
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 2 cut(s) 393, 401
GluI GCNGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 1 cut(s) 130
HapII CCGG 1 cut(s) 57
Hin1II CATG 3 cut(s) 55, 382, 388
HincII GTYRAC 3 cut(s) 100, 144, 280
HindII GTYRAC 3 cut(s) 100, 144, 280
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 156, 211
Hpy166II GTNNAC 3 cut(s) 100, 144, 280
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 2 cut(s) 62, 393
Hpy8I GTNNAC 3 cut(s) 100, 144, 280
Hpy99I CGWCG 1 cut(s) 281
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4V TGCA 2 cut(s) 263, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 2 cut(s) 15, 432
Hsp92II CATG 3 cut(s) 55, 382, 388
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 2 cut(s) 254, 373
LpnPI CCDG 7 cut(s) 27, 70, 75, 183, 198, 410, 437
Lsp1109I GCAGC 1 cut(s) 13
MaeI CTAG 2 cut(s) 393, 401
MaeIII GTNAC 2 cut(s) 71, 284
MalI GATC 2 cut(s) 256, 375
MboI GATC 2 cut(s) 254, 373
MboII GAAGA 2 cut(s) 236, 317
MfeI CAATTG 1 cut(s) 137
MluCI AATT 3 cut(s) 21, 137, 204
MmeI TCCRAC 2 cut(s) 134, 438
MnlI CCTC 6 cut(s) 117, 166, 222, 301, 428, 431
MseI TTAA 3 cut(s) 179, 219, 445
MslI CAYNNNNRTG 1 cut(s) 383
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 2 cut(s) 57, 425
MunI CAATTG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 425
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 157
NciI CCSGG 1 cut(s) 57
NdeII GATC 2 cut(s) 254, 373
NlaIII CATG 3 cut(s) 55, 382, 388
NlaIV GGNNCC 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 284
PkrI GCNGC 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 423
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 2 cut(s) 59, 128
RseI CAYNNNNRTG 1 cut(s) 383
SalI GTCGAC 3 cut(s) 98, 142, 278
SaqAI TTAA 3 cut(s) 179, 219, 445
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 2 cut(s) 254, 373
Sau96I GGNCC 2 cut(s) 59, 128
ScrFI CCNGG 2 cut(s) 57, 425
SetI ASST 6 cut(s) 11, 162, 297, 408, 420, 429
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 383
Sse9I AATT 3 cut(s) 21, 137, 204
SsiI CCGC 1 cut(s) 114
SspMI CTAG 2 cut(s) 393, 401
StyD4I CCNGG 2 cut(s) 55, 423
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 284
TaqI TCGA 3 cut(s) 99, 143, 279
TasI AATT 3 cut(s) 21, 137, 204
Tru1I TTAA 3 cut(s) 179, 219, 445
Tru9I TTAA 3 cut(s) 179, 219, 445
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 2 cut(s) 40, 262
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 59
XagI CCTNNNNNAGG 1 cut(s) 422
XapI RAATTY 1 cut(s) 204
XbaI TCTAGA 1 cut(s) 392
XmiI GTMKAC 3 cut(s) 99, 143, 279
XspI CTAG 2 cut(s) 393, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.