Rmu_sc0001085.1_g000008

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001085.1
OG0000171
Physical Location & Seq
Forward (+)
24872 .. 25541
670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001085.1_g000008.1.cds

Sequence Viewer

Length: 588 bp
atgctgtttgtattgtttctttgcttactaccaatctgtacctcatcatccccatctccaccccattcttacaaccctacccaaaacccggtcgccaagaagcatttcgtgccagttcacggagccggtcacggggcatggtgttggtacaaggtggcaactctgctgaaacagtcaggccacaatgttaccgctctggaccttgcagcatctggaattgacccaactcagatacaagaagttcgttctttcacggtttacgttgaaccgttgacgaatttcatggagtctctcccgccaaaggagagggttattctggttggccacagcttgagtggagtagccttatctattgccatggagaggttcactcagaaaatttctgttgcggtttttgccaccgctgccatgcctggtcctgatatcagtttcttgactatagttcaagaggttggcaatcatttggattttatggactctcaatatagatttgatgatggcgacaccaaacctgcaacctcggcactcgtggggccgaaggtgctagcctcatcgttctaccagctctcgccaccagaggtaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

195

Amino Acids

21.16

Weight (kDa)

6.13

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 520
AccBSI CCGCTC 1 cut(s) 194
AciI CCGC 4 cut(s) 192, 296, 389, 402
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 2 cut(s) 277, 378
AfaI GTAC 2 cut(s) 40, 149
AfiI CCNNNNNNNGG 5 cut(s) 88, 119, 132, 301, 363
AgsI TTSAA 2 cut(s) 266, 446
AjnI CCWGG 1 cut(s) 412
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AluBI AGCT 2 cut(s) 330, 565
AluI AGCT 2 cut(s) 330, 565
Alw26I GTCTC 1 cut(s) 294
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 3 cut(s) 178, 322, 533
ApeKI GCWGC 2 cut(s) 206, 404
ApoI RAATTY 2 cut(s) 277, 378
Asp700I GAANNNNTTC 1 cut(s) 104
AspS9I GGNCC 3 cut(s) 199, 416, 533
AsuC2I CCSGG 1 cut(s) 89
AsuNHI GCTAGC 1 cut(s) 544
AvaII GGWCC 2 cut(s) 199, 416
BalI TGGCCA 1 cut(s) 324
BauI CACGAG 1 cut(s) 527
BbvI GCAGC 2 cut(s) 218, 391
BccI CCATC 2 cut(s) 61, 491
BciT130I CCWGG 1 cut(s) 414
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 1 cut(s) 545
BfmI CTRYAG 1 cut(s) 438
BfuAI ACCTGC 1 cut(s) 520
BisI GCNGC 2 cut(s) 207, 405
BlsI GCNGC 2 cut(s) 208, 406
Bme1390I CCNGG 2 cut(s) 89, 414
Bme18I GGWCC 2 cut(s) 199, 416
BmgT120I GGNCC 3 cut(s) 199, 416, 533
BmiI GGNNCC 2 cut(s) 124, 534
BmrFI CCNGG 2 cut(s) 89, 414
BmsI GCATC 1 cut(s) 218
BmtI GCTAGC 1 cut(s) 548
BplI GAGNNNNNCTC 2 cut(s) 355, 387
BpuEI CTTGAG 1 cut(s) 352
BpuMI CCSGG 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 357, 519
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 119, 132, 301, 363
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 357, 519
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 5 cut(s) 88, 119, 132, 301, 363
BseMII CTCAG 2 cut(s) 242, 386
BseNI ACTGG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 218, 391
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 3 cut(s) 180, 324, 535
BsiEI CGRYCG 1 cut(s) 93
BsiSI CCGG 2 cut(s) 89, 126
BslI CCNNNNNNNGG 5 cut(s) 88, 119, 132, 301, 363
BsmAI GTCTC 1 cut(s) 294
BsnI GGCC 3 cut(s) 180, 324, 535
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 4 cut(s) 192, 296, 389, 402
BspANI GGCC 3 cut(s) 180, 324, 535
BspCNI CTCAG 2 cut(s) 241, 385
BspLI GGNNCC 2 cut(s) 124, 534
BspMI ACCTGC 1 cut(s) 520
BspOI GCTAGC 1 cut(s) 548
BsrBI CCGCTC 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 357, 519
BssSI CACGAG 1 cut(s) 527
BssT1I CCWWGG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 527
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 3 cut(s) 174, 256, 270
BstAPI GCANNNNNTGC 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 2 cut(s) 228, 372
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 47
BstMAI GTCTC 1 cut(s) 294
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 5 cut(s) 109, 395, 404, 521, 541
BstNI CCWGG 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 87, 412
BstSFI CTRYAG 1 cut(s) 438
BstV1I GCAGC 2 cut(s) 218, 391
BsuRI GGCC 3 cut(s) 180, 324, 535
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 1 cut(s) 47
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 1 cut(s) 546
CaiI CAGNNNCTG 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 3 cut(s) 199, 416, 533
Csp6I GTAC 2 cut(s) 39, 148
CviAII CATG 4 cut(s) 138, 283, 358, 409
CviJI RGCY 8 cut(s) 125, 180, 324, 330, 344, 535, 548, 565
CviKI_1 RGCY 8 cut(s) 125, 180, 324, 330, 344, 535, 548, 565
CviQI GTAC 2 cut(s) 39, 148
DdeI CTNAG 2 cut(s) 228, 372
EaeI YGGCCR 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 357
Eco32I GATATC 1 cut(s) 424
Eco47I GGWCC 2 cut(s) 199, 416
EcoRII CCWGG 1 cut(s) 412
EcoRV GATATC 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 4 cut(s) 141, 286, 361, 412
FaiI YATR 7 cut(s) 139, 284, 359, 410, 440, 473, 486
FatI CATG 4 cut(s) 137, 282, 357, 408
FauI CCCGC 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 207, 405
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 2 cut(s) 207, 405
FspBI CTAG 1 cut(s) 545
GluI GCNGC 2 cut(s) 207, 405
HaeIII GGCC 3 cut(s) 180, 324, 535
HapII CCGG 2 cut(s) 89, 126
Hin1II CATG 4 cut(s) 141, 286, 361, 412
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 2 cut(s) 287, 476
HpaII CCGG 2 cut(s) 89, 126
Hpy166II GTNNAC 4 cut(s) 118, 259, 273, 369
Hpy188I TCNGA 2 cut(s) 231, 375
Hpy188III TCNNGA 5 cut(s) 197, 213, 419, 433, 446
Hpy8I GTNNAC 4 cut(s) 118, 259, 273, 369
HpyAV CCTTC 1 cut(s) 532
HpyCH4III ACNGT 3 cut(s) 174, 256, 270
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 2 cut(s) 206, 515
HpyF10VI GCNNNNNNNGC 5 cut(s) 109, 395, 404, 521, 541
HpyF3I CTNAG 2 cut(s) 228, 372
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 4 cut(s) 141, 286, 361, 412
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 2 cut(s) 218, 391
LweI GCATC 1 cut(s) 218
MaeI CTAG 1 cut(s) 545
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 128, 187
MbiI CCGCTC 1 cut(s) 194
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 4 cut(s) 216, 277, 378, 583
MluNI TGGCCA 1 cut(s) 324
MlyI GAGTC 2 cut(s) 296, 470
MnlI CCTC 7 cut(s) 52, 300, 357, 442, 529, 559, 571
Mox20I TGGCCA 1 cut(s) 324
MroXI GAANNNNTTC 1 cut(s) 104
MscI TGGCCA 1 cut(s) 324
MseI TTAA 1 cut(s) 586
Msp20I TGGCCA 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 2 cut(s) 89, 126
MspR9I CCNGG 2 cut(s) 89, 414
MvaI CCWGG 1 cut(s) 414
MwoI GCNNNNNNNGC 5 cut(s) 109, 395, 404, 521, 541
NciI CCSGG 1 cut(s) 89
NcoI CCATGG 1 cut(s) 357
NheI GCTAGC 1 cut(s) 544
NlaIII CATG 4 cut(s) 141, 286, 361, 412
NlaIV GGNNCC 2 cut(s) 124, 534
NmeAIII GCCGAG 1 cut(s) 500
NmuCI GTSAC 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 104
PkrI GCNGC 2 cut(s) 208, 406
PleI GAGTC 2 cut(s) 295, 470
PpsI GAGTC 2 cut(s) 295, 470
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 2 cut(s) 124, 534
PspPI GGNCC 3 cut(s) 199, 416, 533
PstNI CAGNNNCTG 1 cut(s) 212
RsaI GTAC 2 cut(s) 40, 149
RsaNI GTAC 2 cut(s) 39, 148
SaqAI TTAA 1 cut(s) 586
SatI GCNGC 2 cut(s) 207, 405
Sau96I GGNCC 3 cut(s) 199, 416, 533
SchI GAGTC 2 cut(s) 296, 470
ScrFI CCNGG 2 cut(s) 89, 414
SfaNI GCATC 1 cut(s) 218
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 2 cut(s) 199, 416
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 4 cut(s) 216, 277, 378, 583
SsiI CCGC 4 cut(s) 192, 296, 389, 402
SspMI CTAG 1 cut(s) 545
StyD4I CCNGG 2 cut(s) 87, 412
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 3 cut(s) 174, 256, 270
TaiI ACGT 1 cut(s) 264
TasI AATT 4 cut(s) 216, 277, 378, 583
Tru1I TTAA 1 cut(s) 586
Tru9I TTAA 1 cut(s) 586
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 2 cut(s) 206, 404
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 271
TspGWI ACGGA 1 cut(s) 135
VpaK11BI GGWCC 2 cut(s) 199, 416
XapI RAATTY 2 cut(s) 277, 378
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.