Prupe.7G141300_v2.0.a1

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000171
Physical Location & Seq
Reverse (-)
15667360 .. 15670481
3122 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G141300.1

Sequence Viewer

Length: 888 bp
ATGCATTATAGCACAGGCCAAGAAAAGAGAGCGAGGTTTGTACAAAACATGGAGAATATGAGAGTGAAGCATTTGGTGTCTTTCCTTTTATTTCTTAGCTTGACCAGAATCTGCACCCCATCTCCAAACCCAGATGCAAACCAGAAGCATTTTGTGCTGGTTCATGGAGCTGGTCATGGGGCATGGTGCTGGTACAAGGTCTCAACTCTACTCACCTCAATTGGTCATAATGTTACAGCTCTAGACCTAGCAGCATCTGGGGTCAACCCAAAGCAAGTTCAACAACTTCATTCTCTCTCGGATTACGTTGAGCCATTGATGAGATTCATGAAGTCTCTCCCGCCAAAGGAGAGGGTCATCCTTGTGGGCCACAGCATGGGTGGGGCAGCCATATCCATTGCCATGGAGAAATTCCCTGAGAAGATTTATATTGCAGTATTTGCCACCGCTTTAATGCCTGGTCCTGCTCTCAACTACTCAAATCTGTCATCTCAGATTTTAAACAGTGTGGATTTTATGGACAGTCAGTTTAGATATGATCGGGGACCCAACAATCCTCCTACGGCCACGCTTATTGGGCCAAAGTTATTGTCGTCGTCAATGTACCAACTCTCACCACCAGAGGATTTAACACTAGCATTGTCCTTGGTGAGATTCTCTCCTCTCTTTAGTGATGATATAAAACTCACTAAAGAGAAATATGGATCGGTTCGTAGAGTATTCATCGGGTGCGACCAAGACCATGTAATAACTGAGAAATTGCAAATGTTGATGATCAATAAGAATCCGCCGAATGAAGTCATATGGATCAATGGTTCTGATCACATGGTGATGTTCTCTAGACCGCTTGAGCTGTTCTCCTACCTCAAGGAGGTTGCTCAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

296

Amino Acids

33.1

Weight (kDa)

8.87

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 376
AciI CCGC 4 cut(s) 341, 447, 788, 845
AclWI GGATC 2 cut(s) 712, 815
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 1 cut(s) 410
AdeI CACNNNGTG 1 cut(s) 829
AfaI GTAC 3 cut(s) 42, 194, 605
AfiI CCNNNNNNNGG 3 cut(s) 346, 376, 871
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 1 cut(s) 457
AloI GAACNNNNNNTCC 2 cut(s) 799, 831
AluBI AGCT 4 cut(s) 99, 170, 239, 853
AluI AGCT 4 cut(s) 99, 170, 239, 853
Alw26I GTCTC 2 cut(s) 205, 339
AlwI GGATC 2 cut(s) 712, 815
AlwNI CAGNNNCTG 2 cut(s) 111, 257
AoxI GGCC 4 cut(s) 16, 367, 564, 578
ApeKI GCWGC 2 cut(s) 251, 386
ApoI RAATTY 1 cut(s) 410
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
AspS9I GGNCC 4 cut(s) 367, 461, 545, 578
AsuHPI GGTGA 4 cut(s) 205, 606, 661, 841
AvaII GGWCC 2 cut(s) 461, 545
BbvI GCAGC 2 cut(s) 263, 398
BccI CCATC 1 cut(s) 127
BceAI ACGGC 1 cut(s) 579
BciT130I CCWGG 1 cut(s) 459
BclI TGATCA 2 cut(s) 774, 820
BcoDI GTCTC 2 cut(s) 205, 339
BfaI CTAG 4 cut(s) 242, 248, 635, 840
BisI GCNGC 2 cut(s) 252, 387
BlsI GCNGC 2 cut(s) 253, 388
Bme1390I CCNGG 1 cut(s) 459
Bme18I GGWCC 2 cut(s) 461, 545
BmgT120I GGNCC 4 cut(s) 367, 461, 545, 578
BmiI GGNNCC 2 cut(s) 546, 547
BmrFI CCNGG 1 cut(s) 459
BmsI GCATC 2 cut(s) 124, 263
BplI GAGNNNNNCTC 4 cut(s) 643, 675, 842, 874
BpuEI CTTGAG 2 cut(s) 851, 869
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 2 cut(s) 402, 645
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 3 cut(s) 346, 376, 871
Bse3DI GCAATG 1 cut(s) 396
BseBI CCWGG 1 cut(s) 459
BseDI CCNNGG 2 cut(s) 402, 645
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 3 cut(s) 346, 376, 871
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 3 cut(s) 408, 506, 744
BseRI GAGGAG 1 cut(s) 651
BseXI GCAGC 2 cut(s) 263, 398
BsgI GTGCAG 1 cut(s) 97
BshFI GGCC 4 cut(s) 18, 369, 566, 580
BslFI GGGAC 1 cut(s) 558
BslI CCNNNNNNNGG 3 cut(s) 346, 376, 871
BsmAI GTCTC 2 cut(s) 205, 339
BsmFI GGGAC 1 cut(s) 558
BsnI GGCC 4 cut(s) 18, 369, 566, 580
Bso31I GGTCTC 1 cut(s) 205
Bsp1407I TGTACA 1 cut(s) 40
Bsp143I GATC 5 cut(s) 538, 704, 774, 807, 820
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 4 cut(s) 341, 447, 788, 845
BspANI GGCC 4 cut(s) 18, 369, 566, 580
BspCNI CTCAG 3 cut(s) 409, 505, 745
BspHI TCATGA 1 cut(s) 327
BspLI GGNNCC 2 cut(s) 546, 547
BspPI GGATC 2 cut(s) 712, 815
BspTNI GGTCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 396
BsrGI TGTACA 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 402, 645
BssMI GATC 5 cut(s) 538, 704, 774, 807, 820
BssT1I CCWWGG 2 cut(s) 402, 645
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 2 cut(s) 506, 524
BstAPI GCANNNNNTGC 2 cut(s) 154, 440
BstAUI TGTACA 1 cut(s) 40
BstDEI CTNAG 5 cut(s) 95, 417, 492, 753, 879
BstDSI CCRYGG 1 cut(s) 402
BstENI CCTNNNNNAGG 1 cut(s) 869
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 5 cut(s) 541, 707, 777, 810, 823
BstMAI GTCTC 2 cut(s) 205, 339
BstMBI GATC 5 cut(s) 538, 704, 774, 807, 820
BstMWI GCNNNNNNNGC 3 cut(s) 154, 440, 577
BstNI CCWGG 1 cut(s) 459
BstSCI CCNGG 1 cut(s) 457
BstV1I GCAGC 2 cut(s) 263, 398
BstXI CCANNNNNNTGG 1 cut(s) 403
BsuRI GGCC 4 cut(s) 18, 369, 566, 580
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 511
CaiI CAGNNNCTG 2 cut(s) 111, 257
CciI TCATGA 1 cut(s) 327
Cfr13I GGNCC 4 cut(s) 367, 461, 545, 578
Csp6I GTAC 3 cut(s) 41, 193, 604
CspCI CAANNNNNGTGG 2 cut(s) 556, 591
CviAII CATG 9 cut(s) 49, 164, 176, 183, 328, 376, 403, 743, 826
CviQI GTAC 3 cut(s) 41, 193, 604
DdeI CTNAG 5 cut(s) 95, 417, 492, 753, 879
DpnI GATC 5 cut(s) 540, 706, 776, 809, 822
DpnII GATC 5 cut(s) 538, 704, 774, 807, 820
DraI TTTAAA 1 cut(s) 501
DraIII CACNNNGTG 1 cut(s) 829
EaeI YGGCCR 1 cut(s) 564
EciI GGCGGA 1 cut(s) 777
Eco130I CCWWGG 2 cut(s) 402, 645
Eco31I GGTCTC 1 cut(s) 205
Eco47I GGWCC 2 cut(s) 461, 545
EcoNI CCTNNNNNAGG 1 cut(s) 869
EcoO109I RGGNCCY 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 457
EcoT14I CCWWGG 2 cut(s) 402, 645
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 402, 645
FaeI CATG 9 cut(s) 52, 167, 179, 186, 331, 379, 406, 746, 829
FaqI GGGAC 1 cut(s) 558
FatI CATG 9 cut(s) 48, 163, 175, 182, 327, 375, 402, 742, 825
FauI CCCGC 1 cut(s) 348
FauNDI CATATG 1 cut(s) 803
FbaI TGATCA 2 cut(s) 774, 820
Fnu4HI GCNGC 2 cut(s) 252, 387
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 2 cut(s) 252, 387
FspBI CTAG 4 cut(s) 242, 248, 635, 840
GluI GCNGC 2 cut(s) 252, 387
HaeIII GGCC 4 cut(s) 18, 369, 566, 580
Hin1II CATG 9 cut(s) 52, 167, 179, 186, 331, 379, 406, 746, 829
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 4 cut(s) 108, 324, 654, 784
HphI GGTGA 4 cut(s) 205, 606, 661, 841
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 4 cut(s) 301, 495, 820, 882
Hpy188III TCNNGA 3 cut(s) 242, 328, 840
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 1 cut(s) 598
HpyCH4III ACNGT 2 cut(s) 506, 524
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 5 cut(s) 4, 114, 137, 434, 763
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 440, 577
HpyF3I CTNAG 5 cut(s) 95, 417, 492, 753, 879
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 9 cut(s) 52, 167, 179, 186, 331, 379, 406, 746, 829
KflI GGGWCCC 1 cut(s) 545
Ksp22I TGATCA 2 cut(s) 774, 820
Kzo9I GATC 5 cut(s) 538, 704, 774, 807, 820
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 2 cut(s) 263, 398
LweI GCATC 2 cut(s) 124, 263
MaeI CTAG 4 cut(s) 242, 248, 635, 840
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 232
MalI GATC 5 cut(s) 540, 706, 776, 809, 822
MboI GATC 5 cut(s) 538, 704, 774, 807, 820
MboII GAAGA 1 cut(s) 433
MfeI CAATTG 1 cut(s) 219
MluCI AATT 3 cut(s) 219, 410, 758
MnlI CCTC 8 cut(s) 27, 226, 345, 567, 616, 672, 865, 875
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 452, 500, 629
MslI CAYNNNNRTG 3 cut(s) 362, 401, 830
MspR9I CCNGG 1 cut(s) 459
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 459
MwoI GCNNNNNNNGC 3 cut(s) 154, 440, 577
NcoI CCATGG 1 cut(s) 402
NdeI CATATG 1 cut(s) 803
NdeII GATC 5 cut(s) 538, 704, 774, 807, 820
NlaIII CATG 9 cut(s) 52, 167, 179, 186, 331, 379, 406, 746, 829
NlaIV GGNNCC 2 cut(s) 546, 547
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 327
PfeI GAWTC 4 cut(s) 108, 324, 654, 784
PflMI CCANNNNNTGG 1 cut(s) 376
PkrI GCNGC 2 cut(s) 253, 388
PpuMI RGGWCCY 1 cut(s) 545
Psp5II RGGWCCY 1 cut(s) 545
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PspN4I GGNNCC 2 cut(s) 546, 547
PspPI GGNCC 4 cut(s) 367, 461, 545, 578
PspPPI RGGWCCY 1 cut(s) 545
PstNI CAGNNNCTG 2 cut(s) 111, 257
RsaI GTAC 3 cut(s) 42, 194, 605
RsaNI GTAC 3 cut(s) 41, 193, 604
RseI CAYNNNNRTG 3 cut(s) 362, 401, 830
SaqAI TTAA 3 cut(s) 452, 500, 629
SatI GCNGC 2 cut(s) 252, 387
Sau3AI GATC 5 cut(s) 538, 704, 774, 807, 820
Sau96I GGNCC 4 cut(s) 367, 461, 545, 578
ScrFI CCNGG 1 cut(s) 459
SfaNI GCATC 2 cut(s) 124, 263
SinI GGWCC 2 cut(s) 461, 545
SmiMI CAYNNNNRTG 3 cut(s) 362, 401, 830
SmlI CTYRAG 2 cut(s) 848, 866
SmoI CTYRAG 2 cut(s) 848, 866
Sse9I AATT 3 cut(s) 219, 410, 758
SsiI CCGC 4 cut(s) 341, 447, 788, 845
SspMI CTAG 4 cut(s) 242, 248, 635, 840
StyD4I CCNGG 1 cut(s) 457
StyI CCWWGG 2 cut(s) 402, 645
TaaI ACNGT 2 cut(s) 506, 524
TaiI ACGT 1 cut(s) 309
TasI AATT 3 cut(s) 219, 410, 758
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 4 cut(s) 108, 324, 654, 784
Tru1I TTAA 3 cut(s) 452, 500, 629
Tru9I TTAA 3 cut(s) 452, 500, 629
TscAI CASTG 1 cut(s) 511
TseI GCWGC 2 cut(s) 251, 386
TspDTI ATGAA 6 cut(s) 152, 278, 316, 344, 712, 810
TspRI CASTG 1 cut(s) 511
Van91I CCANNNNNTGG 1 cut(s) 376
VpaK11BI GGWCC 2 cut(s) 461, 545
XagI CCTNNNNNAGG 1 cut(s) 869
XapI RAATTY 1 cut(s) 410
XbaI TCTAGA 2 cut(s) 241, 839
XcmI CCANNNNNNNNNTGG 1 cut(s) 377
XspI CTAG 4 cut(s) 242, 248, 635, 840
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.