Rmu_sc0002081.1_g000009

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002081.1
OG0000171
Physical Location & Seq
Forward (+)
45008 .. 46694
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002081.1_g000009.1.cds

Sequence Viewer

Length: 366 bp
atggaaaggttccctgagaaaattactgctgttgtatttgccactgctttcatgcccggtcctgatttcagttacttgaccatttatcaaaaggatttaacaccagcattgtctttggtgagaatttttcctctgttcaaagaagacataaaactcaccaaggagaaatatggatcggttgcaagagtattcatcgtcgactgtgaccaagacctttcaatagaagaggatgtgcaaatgtggatgattgagaaaaatccaccaaatcaagtgaaagtgataaatgtttctgatcacatggtcatgttctctagaccactagagctgttctccaacctcctccaggttgctgagaaatatgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

121

Amino Acids

14.01

Weight (kDa)

4.95

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 198
AclWI GGATC 1 cut(s) 181
AcsI RAATTY 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 2 cut(s) 139, 219
AjnI CCWGG 1 cut(s) 342
AluBI AGCT 1 cut(s) 325
AluI AGCT 1 cut(s) 325
AlwI GGATC 1 cut(s) 181
ApoI RAATTY 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 59
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 130, 148
AvaII GGWCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 344
BclI TGATCA 1 cut(s) 292
BcnI CCSGG 1 cut(s) 57
BfaI CTAG 2 cut(s) 312, 320
Bme1390I CCNGG 2 cut(s) 57, 344
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 2 cut(s) 57, 344
BpiI GAAGAC 1 cut(s) 150
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BpmI CTGGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 2 cut(s) 235, 249
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 6, 342
BseRI GAGGAG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 343
Bsp143I GATC 2 cut(s) 173, 292
BspCNI CTCAG 2 cut(s) 7, 343
BspLI GGNNCC 1 cut(s) 11
BspPI GGATC 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 2 cut(s) 173, 292
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 15, 351
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 2 cut(s) 235, 249
BstKTI GATC 2 cut(s) 176, 295
BstMBI GATC 2 cut(s) 173, 292
BstNI CCWGG 1 cut(s) 344
BstSCI CCNGG 2 cut(s) 55, 342
BstV2I GAAGAC 1 cut(s) 150
BtsCI GGATG 2 cut(s) 235, 249
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 59
CviAII CATG 3 cut(s) 52, 298, 304
CviJI RGCY 1 cut(s) 325
CviKI_1 RGCY 1 cut(s) 325
DdeI CTNAG 2 cut(s) 15, 351
DpnI GATC 2 cut(s) 175, 294
DpnII GATC 2 cut(s) 173, 292
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 59
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 3 cut(s) 55, 301, 307
FaiI YATR 6 cut(s) 53, 149, 171, 299, 305, 360
FatI CATG 3 cut(s) 51, 297, 303
FbaI TGATCA 1 cut(s) 292
FblI GTMKAC 1 cut(s) 198
FokI GGATG 2 cut(s) 242, 256
FspBI CTAG 2 cut(s) 312, 320
GsuI CTGGAG 1 cut(s) 326
HapII CCGG 1 cut(s) 57
Hin1II CATG 3 cut(s) 55, 301, 307
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 130, 148
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 2 cut(s) 62, 312
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 2 cut(s) 182, 235
HpyF3I CTNAG 2 cut(s) 15, 351
Hsp92II CATG 3 cut(s) 55, 301, 307
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 2 cut(s) 173, 292
LpnPI CCDG 6 cut(s) 27, 70, 75, 117, 329, 356
MaeI CTAG 2 cut(s) 312, 320
MaeIII GTNAC 2 cut(s) 71, 203
MalI GATC 2 cut(s) 175, 294
MboI GATC 2 cut(s) 173, 292
MboII GAAGA 2 cut(s) 155, 236
MluCI AATT 2 cut(s) 21, 123
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 4 cut(s) 141, 220, 347, 350
MseI TTAA 2 cut(s) 98, 364
MslI CAYNNNNRTG 1 cut(s) 302
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 2 cut(s) 57, 344
MvaI CCWGG 1 cut(s) 344
NciI CCSGG 1 cut(s) 57
NdeII GATC 2 cut(s) 173, 292
NlaIII CATG 3 cut(s) 55, 301, 307
NlaIV GGNNCC 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 302
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 2 cut(s) 98, 364
Sau3AI GATC 2 cut(s) 173, 292
Sau96I GGNCC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 57, 344
SetI ASST 5 cut(s) 11, 216, 327, 339, 348
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 302
Sse9I AATT 2 cut(s) 21, 123
SspMI CTAG 2 cut(s) 312, 320
StyD4I CCNGG 2 cut(s) 55, 342
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 198
TasI AATT 2 cut(s) 21, 123
Tru1I TTAA 2 cut(s) 98, 364
Tru9I TTAA 2 cut(s) 98, 364
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 40, 181
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 59
XagI CCTNNNNNAGG 1 cut(s) 341
XapI RAATTY 1 cut(s) 123
XbaI TCTAGA 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 2 cut(s) 312, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.