Rmu_sc0002316.1_g000050

Salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002316.1
OG0000171
Physical Location & Seq
Forward (+)
242229 .. 243708
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002316.1_g000050.1.cds

Sequence Viewer

Length: 891 bp
atgcaggccaaggaaaaagaaaacatggatcacataattagaggtaagcactttgtgttctttcttttatctcttagcttggcagcaactacttccggtgcttcttcttctttttgccaactgagctctttcgggaagaagcactttgtgctgattcatggagcatgtcaaggagcgtggacttggtacaaggtggcaactctactcaaacactcgggacacaatgtcacagctcttgacttgggagcatccggaattaacccgatccaggcacagcaattcccttcgctctctgactacattgaaccgttgacaaagctcatggtgtctctgccgccagaggagagggttattctcgtggctcatagcatgggtggagctgttatatctattttcatggagaggtttcctgagaagattgctgctgctgtttatgtcactggttttatgtccggacctactctcaattactccactatttttacagagattaacaaaaagctggattatatggactctcagtacagatatgatgcagggcctaacaatcctgcaacgtccttcctcaccgggcccatggtcttagcctcaaaattctaccagctctccccaccagaggatttaacactaagtttgtcagtaatgaggttttctcctctctataattatgatgtgataaagctcaccgaggagaaatatgggtcggttccaagagtattcatcgtggcggaacaagatcatgcaatagtcttggacgtgcaaaattttatgataaagaacaatccaccaaatgaagtcaaagtgattaatggttctgatcacatggttatgctctgtagaccggtggagttgttttcccacctccaggatattgctgagaaatatttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

296

Amino Acids

33.06

Weight (kDa)

6.36

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 838
AccIII TCCGGA 2 cut(s) 251, 452
AciI CCGC 2 cut(s) 335, 728
AclWI GGATC 2 cut(s) 36, 259
AcsI RAATTY 2 cut(s) 593, 763
AdeI CACNNNGTG 2 cut(s) 55, 148
AfaI GTAC 2 cut(s) 188, 524
AfiI CCNNNNNNNGG 3 cut(s) 268, 616, 865
AgeI ACCGGT 1 cut(s) 841
AgsI TTSAA 1 cut(s) 305
AhdI GACNNNNNGTC 1 cut(s) 224
AjiI CACGTC 1 cut(s) 757
AjnI CCWGG 2 cut(s) 267, 864
AluBI AGCT 8 cut(s) 78, 126, 233, 319, 380, 502, 604, 682
AluI AGCT 8 cut(s) 78, 126, 233, 319, 380, 502, 604, 682
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 2 cut(s) 36, 259
Ama87I CYCGRG 1 cut(s) 214
Aor13HI TCCGGA 2 cut(s) 251, 452
AoxI GGCC 3 cut(s) 6, 539, 572
ApaI GGGCCC 1 cut(s) 576
ApeKI GCWGC 3 cut(s) 83, 422, 425
ApoI RAATTY 2 cut(s) 593, 763
AseI ATTAAT 1 cut(s) 807
AsiGI ACCGGT 1 cut(s) 841
AspS9I GGNCC 4 cut(s) 455, 539, 572, 573
AsuC2I CCSGG 1 cut(s) 571
AsuHPI GGTGA 2 cut(s) 559, 676
AvaI CYCGRG 1 cut(s) 214
AvaII GGWCC 1 cut(s) 455
BaeGI GKGCMC 1 cut(s) 576
BanII GRGCYC 2 cut(s) 128, 576
BauI CACGAG 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 3 cut(s) 95, 409, 412
BciT130I CCWGG 2 cut(s) 269, 866
BclI TGATCA 1 cut(s) 817
BcnI CCSGG 1 cut(s) 571
BcoDI GTCTC 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 835
BisI GCNGC 4 cut(s) 84, 335, 423, 426
BlsI GCNGC 4 cut(s) 85, 336, 424, 427
Bme1390I CCNGG 3 cut(s) 269, 571, 866
Bme18I GGWCC 1 cut(s) 455
BmeRI GACNNNNNGTC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 214
BmgBI CACGTC 1 cut(s) 757
BmgT120I GGNCC 4 cut(s) 455, 539, 572, 573
BmiI GGNNCC 2 cut(s) 574, 708
BmrFI CCNGG 3 cut(s) 269, 571, 866
BmsI GCATC 2 cut(s) 257, 523
BplI GAGNNNNNCTC 2 cut(s) 637, 669
BpmI CTGGAG 1 cut(s) 848
BpuMI CCSGG 1 cut(s) 571
BsaJI CCNNGG 3 cut(s) 9, 576, 687
BsaWI WCCGGW 4 cut(s) 95, 251, 452, 841
BsaXI ACNNNNNCTCC 2 cut(s) 590, 620
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 616, 865
Bse118I RCCGGY 1 cut(s) 841
Bse1I ACTGG 1 cut(s) 445
BseAI TCCGGA 2 cut(s) 251, 452
BseBI CCWGG 2 cut(s) 269, 866
BseDI CCNNGG 3 cut(s) 9, 576, 687
BseGI GGATG 1 cut(s) 248
BseLI CCNNNNNNNGG 3 cut(s) 268, 616, 865
BseMII CTCAG 4 cut(s) 113, 402, 533, 867
BseNI ACTGG 1 cut(s) 445
BseRI GAGGAG 3 cut(s) 356, 645, 704
BseSI GKGCMC 1 cut(s) 576
BseXI GCAGC 3 cut(s) 95, 409, 412
BshFI GGCC 3 cut(s) 8, 541, 574
BshTI ACCGGT 1 cut(s) 841
BsiHKAI GWGCWC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 5 cut(s) 96, 252, 453, 570, 842
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 3 cut(s) 268, 616, 865
BsmAI GTCTC 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 231
BsnI GGCC 3 cut(s) 8, 541, 574
BsoBI CYCGRG 1 cut(s) 214
Bsp120I GGGCCC 1 cut(s) 572
Bsp1286I GDGCHC 2 cut(s) 128, 576
Bsp13I TCCGGA 2 cut(s) 251, 452
Bsp143I GATC 4 cut(s) 28, 264, 736, 817
Bsp19I CCATGG 1 cut(s) 576
BspACI CCGC 2 cut(s) 335, 728
BspANI GGCC 3 cut(s) 8, 541, 574
BspCNI CTCAG 4 cut(s) 114, 403, 532, 868
BspEI TCCGGA 2 cut(s) 251, 452
BspLI GGNNCC 2 cut(s) 574, 708
BspPI GGATC 2 cut(s) 36, 259
BsrFI RCCGGY 1 cut(s) 841
BsrI ACTGG 1 cut(s) 445
BssAI RCCGGY 1 cut(s) 841
BssECI CCNNGG 3 cut(s) 9, 576, 687
BssMI GATC 4 cut(s) 28, 264, 736, 817
BssSI CACGAG 1 cut(s) 356
BssT1I CCWWGG 2 cut(s) 9, 576
Bst2BI CACGAG 1 cut(s) 356
Bst2UI CCWGG 2 cut(s) 269, 866
Bst4CI ACNGT 1 cut(s) 309
BstAPI GCANNNNNTGC 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 7 cut(s) 74, 122, 411, 519, 583, 629, 876
BstDSI CCRYGG 1 cut(s) 576
BstF5I GGATG 1 cut(s) 248
BstKTI GATC 4 cut(s) 31, 267, 739, 820
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 4 cut(s) 28, 264, 736, 817
BstMWI GCNNNNNNNGC 2 cut(s) 123, 148
BstNI CCWGG 2 cut(s) 269, 866
BstNSI RCATGY 1 cut(s) 168
BstSCI CCNGG 3 cut(s) 267, 569, 864
BstSFI CTRYAG 1 cut(s) 835
BstSLI GKGCMC 1 cut(s) 576
BstV1I GCAGC 3 cut(s) 95, 409, 412
BsuRI GGCC 3 cut(s) 8, 541, 574
BtgI CCRYGG 1 cut(s) 576
BtrI CACGTC 1 cut(s) 757
BtsCI GGATG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 841
Cfr13I GGNCC 4 cut(s) 455, 539, 572, 573
Csp6I GTAC 2 cut(s) 187, 523
CspAI ACCGGT 1 cut(s) 841
CspCI CAANNNNNGTGG 2 cut(s) 158, 193
CviAII CATG 9 cut(s) 25, 158, 165, 322, 370, 397, 577, 740, 823
CviQI GTAC 2 cut(s) 187, 523
DdeI CTNAG 7 cut(s) 74, 122, 411, 519, 583, 629, 876
DpnI GATC 4 cut(s) 30, 266, 738, 819
DpnII GATC 4 cut(s) 28, 264, 736, 817
DraIII CACNNNGTG 2 cut(s) 55, 148
DriI GACNNNNNGTC 1 cut(s) 224
Eam1105I GACNNNNNGTC 1 cut(s) 224
EciI GGCGGA 1 cut(s) 743
Ecl136II GAGCTC 1 cut(s) 126
Eco130I CCWWGG 2 cut(s) 9, 576
Eco24I GRGCYC 2 cut(s) 128, 576
Eco47I GGWCC 1 cut(s) 455
Eco53kI GAGCTC 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 539
EcoRII CCWGG 2 cut(s) 267, 864
EcoT14I CCWWGG 2 cut(s) 9, 576
EcoT38I GRGCYC 2 cut(s) 128, 576
ErhI CCWWGG 2 cut(s) 9, 576
FaeI CATG 9 cut(s) 28, 161, 168, 325, 373, 400, 580, 743, 826
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 1 cut(s) 231
FatI CATG 9 cut(s) 24, 157, 164, 321, 369, 396, 576, 739, 822
FbaI TGATCA 1 cut(s) 817
FblI GTMKAC 1 cut(s) 838
Fnu4HI GCNGC 4 cut(s) 84, 335, 423, 426
FokI GGATG 1 cut(s) 235
FriOI GRGCYC 2 cut(s) 128, 576
Fsp4HI GCNGC 4 cut(s) 84, 335, 423, 426
GluI GCNGC 4 cut(s) 84, 335, 423, 426
GsuI CTGGAG 1 cut(s) 848
HaeIII GGCC 3 cut(s) 8, 541, 574
HapII CCGG 5 cut(s) 96, 252, 453, 570, 842
Hin1II CATG 9 cut(s) 28, 161, 168, 325, 373, 400, 580, 743, 826
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 2 cut(s) 154, 515
HpaII CCGG 5 cut(s) 96, 252, 453, 570, 842
HphI GGTGA 2 cut(s) 559, 676
Hpy166II GTNNAC 3 cut(s) 180, 312, 839
Hpy188I TCNGA 2 cut(s) 295, 817
Hpy188III TCNNGA 6 cut(s) 133, 216, 236, 252, 410, 453
Hpy8I GTNNAC 3 cut(s) 180, 312, 839
HpyAV CCTTC 2 cut(s) 294, 571
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4IV ACGT 2 cut(s) 557, 756
HpyCH4V TGCA 5 cut(s) 4, 536, 554, 743, 760
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 148
HpyF3I CTNAG 7 cut(s) 74, 122, 411, 519, 583, 629, 876
HpySE526I ACGT 2 cut(s) 557, 756
Hsp92II CATG 9 cut(s) 28, 161, 168, 325, 373, 400, 580, 743, 826
Kpn2I TCCGGA 2 cut(s) 251, 452
Ksp22I TGATCA 1 cut(s) 817
Kzo9I GATC 4 cut(s) 28, 264, 736, 817
LmnI GCTCC 4 cut(s) 161, 173, 245, 377
Lsp1109I GCAGC 3 cut(s) 95, 409, 412
LweI GCATC 2 cut(s) 257, 523
MaeII ACGT 2 cut(s) 557, 756
MaeIII GTNAC 2 cut(s) 226, 436
MalI GATC 4 cut(s) 30, 266, 738, 819
MboI GATC 4 cut(s) 28, 264, 736, 817
MboII GAAGA 4 cut(s) 96, 99, 148, 427
MhlI GDGCHC 2 cut(s) 128, 576
MluCI AATT 7 cut(s) 36, 255, 278, 466, 593, 664, 763
MlyI GAGTC 1 cut(s) 509
MroI TCCGGA 2 cut(s) 251, 452
MseI TTAA 5 cut(s) 258, 492, 623, 807, 889
MslI CAYNNNNRTG 1 cut(s) 827
MspI CCGG 5 cut(s) 96, 252, 453, 570, 842
MspR9I CCNGG 3 cut(s) 269, 571, 866
MvaI CCWGG 2 cut(s) 269, 866
MwoI GCNNNNNNNGC 2 cut(s) 123, 148
NciI CCSGG 1 cut(s) 571
NcoI CCATGG 1 cut(s) 576
NdeII GATC 4 cut(s) 28, 264, 736, 817
NlaIII CATG 9 cut(s) 28, 161, 168, 325, 373, 400, 580, 743, 826
NlaIV GGNNCC 2 cut(s) 574, 708
NmuCI GTSAC 2 cut(s) 226, 436
NspI RCATGY 1 cut(s) 168
PfeI GAWTC 1 cut(s) 154
PfoI TCCNGGA 1 cut(s) 864
PinAI ACCGGT 1 cut(s) 841
PkrI GCNGC 4 cut(s) 85, 336, 424, 427
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
PshBI ATTAAT 1 cut(s) 807
Psp124BI GAGCTC 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 267, 864
PspGI CCWGG 2 cut(s) 267, 864
PspN4I GGNNCC 2 cut(s) 574, 708
PspOMI GGGCCC 1 cut(s) 572
PspPI GGNCC 4 cut(s) 455, 539, 572, 573
RsaI GTAC 2 cut(s) 188, 524
RsaNI GTAC 2 cut(s) 187, 523
RseI CAYNNNNRTG 1 cut(s) 827
SacI GAGCTC 1 cut(s) 128
SaqAI TTAA 5 cut(s) 258, 492, 623, 807, 889
SatI GCNGC 4 cut(s) 84, 335, 423, 426
Sau3AI GATC 4 cut(s) 28, 264, 736, 817
Sau96I GGNCC 4 cut(s) 455, 539, 572, 573
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 3 cut(s) 269, 571, 866
SduI GDGCHC 2 cut(s) 128, 576
SfaNI GCATC 2 cut(s) 257, 523
SfcI CTRYAG 1 cut(s) 835
SinI GGWCC 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 827
Sse9I AATT 7 cut(s) 36, 255, 278, 466, 593, 664, 763
SsiI CCGC 2 cut(s) 335, 728
SspI AATATT 1 cut(s) 884
SstI GAGCTC 1 cut(s) 128
StyD4I CCNGG 3 cut(s) 267, 569, 864
StyI CCWWGG 2 cut(s) 9, 576
TaaI ACNGT 1 cut(s) 309
TaiI ACGT 2 cut(s) 560, 759
TasI AATT 7 cut(s) 36, 255, 278, 466, 593, 664, 763
TatI WGTACW 1 cut(s) 522
TauI GCSGC 1 cut(s) 337
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 5 cut(s) 258, 492, 623, 807, 889
Tru9I TTAA 5 cut(s) 258, 492, 623, 807, 889
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 2 cut(s) 226, 436
TseI GCWGC 3 cut(s) 83, 422, 425
Tsp45I GTSAC 2 cut(s) 226, 436
TspDTI ATGAA 4 cut(s) 146, 385, 709, 807
TspRI CASTG 1 cut(s) 445
VpaK11BI GGWCC 1 cut(s) 455
VspI ATTAAT 1 cut(s) 807
XapI RAATTY 2 cut(s) 593, 763
XceI RCATGY 1 cut(s) 168
XmiI GTMKAC 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.