Rh2CG173000

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000171
Physical Location & Seq
Forward (+)
15448585 .. 15449509
925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG173000.1

Sequence Viewer

Length: 492 bp
ATGGAAAGGTTCCCTCATAAAATTTCTGTTGCGGTTTTTGCCACCGCTGCCATGCCTGGTCCTGATATCAGTTTCTTGACCATACTTCAAGAGGTTGGCAGTCATTTGGATTTTATGGACTCTCAATATAGATTTGATGATGGCGACACCAAACCTGCAACCTCGGCACTCGTGGGGCCGAAGGTGCTAGCCTCATCGTTCTACCAGCTCTCGCCACCAGAGGATTTAACACTAGCGGTCACACTGGTGAGATTTGACCCTCTTATTACAGAAGAACTGAAATTCTCAAAGCATAGATATGGATCGGTTCGTAAAGTATACATTTTGTGCGACCAAGACCATGCAATAAAGGTGGATCTTGCAATGTTGATGATCAACAAAAATCCTCCCGATGAAGTCAAAGTGATAAATGGTTCTGATCACATGGTCATGTTCTCCAGACCACTCGAGCTTTTCTCCAACATCCTACAAATTGCTGAGAAATACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

163

Amino Acids

18.32

Weight (kDa)

5.46

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 163
AccI GTMKAC 1 cut(s) 318
AciI CCGC 3 cut(s) 32, 45, 236
AclWI GGATC 2 cut(s) 310, 363
AcsI RAATTY 2 cut(s) 21, 281
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 1 cut(s) 55
AleI CACNNNNGTG 1 cut(s) 245
AluBI AGCT 2 cut(s) 208, 451
AluI AGCT 2 cut(s) 208, 451
AlwI GGATC 2 cut(s) 310, 363
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 2 cut(s) 21, 281
AspS9I GGNCC 2 cut(s) 59, 176
AsuHPI GGTGA 1 cut(s) 259
AsuNHI GCTAGC 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 1 cut(s) 59
BauI CACGAG 1 cut(s) 170
BbvI GCAGC 1 cut(s) 34
BccI CCATC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 57
BclI TGATCA 2 cut(s) 372, 418
BfaI CTAG 2 cut(s) 188, 233
BfuAI ACCTGC 1 cut(s) 163
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 1 cut(s) 59
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 2 cut(s) 59, 176
BmiI GGNNCC 2 cut(s) 11, 177
BmrFI CCNGG 1 cut(s) 57
BmtI GCTAGC 1 cut(s) 191
BplI GAGNNNNNCTC 3 cut(s) 440, 472, 470
BpmI CTGGAG 1 cut(s) 421
BsaBI GATNNNNATC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 369
Bse8I GATNNNNATC 1 cut(s) 301
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 462
BseJI GATNNNNATC 1 cut(s) 301
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 249
BseXI GCAGC 1 cut(s) 34
BshFI GGCC 1 cut(s) 178
BsiHKCI CYCGRG 1 cut(s) 446
BsnI GGCC 1 cut(s) 178
BsoBI CYCGRG 1 cut(s) 446
Bsp143I GATC 4 cut(s) 302, 355, 372, 418
BspACI CCGC 3 cut(s) 32, 45, 236
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 469
BspLI GGNNCC 2 cut(s) 11, 177
BspMI ACCTGC 1 cut(s) 163
BspOI GCTAGC 1 cut(s) 191
BspPI GGATC 2 cut(s) 310, 363
BsrDI GCAATG 1 cut(s) 369
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 4 cut(s) 302, 355, 372, 418
BssNAI GTATAC 1 cut(s) 319
BssSI CACGAG 1 cut(s) 170
Bst1107I GTATAC 1 cut(s) 319
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 477
BstF5I GGATG 1 cut(s) 462
BstKTI GATC 4 cut(s) 305, 358, 375, 421
BstMBI GATC 4 cut(s) 302, 355, 372, 418
BstMWI GCNNNNNNNGC 4 cut(s) 38, 47, 164, 184
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BstZ17I GTATAC 1 cut(s) 319
BsuRI GGCC 1 cut(s) 178
BtsCI GGATG 1 cut(s) 462
BtsIMutI CAGTG 1 cut(s) 242
BveI ACCTGC 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 189
Cfr13I GGNCC 2 cut(s) 59, 176
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviAII CATG 4 cut(s) 52, 341, 424, 430
CviJI RGCY 4 cut(s) 178, 191, 208, 451
CviKI_1 RGCY 4 cut(s) 178, 191, 208, 451
DdeI CTNAG 1 cut(s) 477
DpnI GATC 4 cut(s) 304, 357, 374, 420
DpnII GATC 4 cut(s) 302, 355, 372, 418
Eco32I GATATC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 55
EcoRV GATATC 1 cut(s) 67
FaeI CATG 4 cut(s) 55, 344, 427, 433
FatI CATG 4 cut(s) 51, 340, 423, 429
FbaI TGATCA 2 cut(s) 372, 418
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 2 cut(s) 188, 233
GluI GCNGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 421
HaeIII GGCC 1 cut(s) 178
Hin1II CATG 4 cut(s) 55, 344, 427, 433
HinfI GANTC 1 cut(s) 119
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 418
Hpy188III TCNNGA 5 cut(s) 62, 76, 89, 389, 438
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 1 cut(s) 175
HpyCH4V TGCA 3 cut(s) 158, 344, 362
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 47, 164, 184
HpyF3I CTNAG 1 cut(s) 477
Hsp92II CATG 4 cut(s) 55, 344, 427, 433
Ksp22I TGATCA 2 cut(s) 372, 418
Kzo9I GATC 4 cut(s) 302, 355, 372, 418
LpnPI CCDG 8 cut(s) 42, 69, 75, 168, 218, 230, 231, 451
Lsp1109I GCAGC 1 cut(s) 34
MaeI CTAG 2 cut(s) 188, 233
MaeIII GTNAC 1 cut(s) 238
MalI GATC 4 cut(s) 304, 357, 374, 420
MboI GATC 4 cut(s) 302, 355, 372, 418
MboII GAAGA 1 cut(s) 284
MflI RGATCY 1 cut(s) 355
MluCI AATT 3 cut(s) 21, 281, 471
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 7 cut(s) 24, 85, 172, 202, 214, 270, 396
MseI TTAA 1 cut(s) 227
MslI CAYNNNNRTG 3 cut(s) 245, 297, 428
MspA1I CMGCKG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 4 cut(s) 38, 47, 164, 184
NdeII GATC 4 cut(s) 302, 355, 372, 418
NheI GCTAGC 1 cut(s) 187
NlaIII CATG 4 cut(s) 55, 344, 427, 433
NlaIV GGNNCC 2 cut(s) 11, 177
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 238
OliI CACNNNNGTG 1 cut(s) 245
PaeR7I CTCGAG 1 cut(s) 446
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 11, 177
PspPI GGNCC 2 cut(s) 59, 176
PspXI VCTCGAGB 1 cut(s) 446
PsuI RGATCY 1 cut(s) 355
RseI CAYNNNNRTG 3 cut(s) 245, 297, 428
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 4 cut(s) 302, 355, 372, 418
Sau96I GGNCC 2 cut(s) 59, 176
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 57
SetI ASST 8 cut(s) 11, 96, 157, 164, 186, 210, 354, 453
Sfr274I CTCGAG 1 cut(s) 446
SinI GGWCC 1 cut(s) 59
SlaI CTCGAG 1 cut(s) 446
SmiMI CAYNNNNRTG 3 cut(s) 245, 297, 428
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 3 cut(s) 21, 281, 471
SsiI CCGC 3 cut(s) 32, 45, 236
SspMI CTAG 2 cut(s) 188, 233
StyD4I CCNGG 1 cut(s) 55
TaqI TCGA 1 cut(s) 447
TasI AATT 3 cut(s) 21, 281, 471
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 408
TspRI CASTG 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 59
XapI RAATTY 2 cut(s) 21, 281
XhoI CTCGAG 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 318
XspI CTAG 2 cut(s) 188, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.