FvH4_1g14880

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000171
Physical Location & Seq
Forward (+)
8310689 .. 8311843
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14880.t1

Sequence Viewer

Length: 498 bp
ATGAAGCATTTCGTGCTTATTCACGGCGCTGGCCACGGAGCATGGTGCTGGTACAAGCTAGCAACCCTACTGACCGCCGCTGGTCACAACGTCACAGCCCTAGACCTCCCTGGATCAGGCATAAACCTAACGGAGGTACAACAAATCCGCTCCATTGCAGACTATTCCGAGCCATTGATCAAGCTCATGGAGTCTCTGCCACCGCAGGATAGGGTTATCCTAGTAGGTCACAGCTTGGGTGGTCTTCCCCTAACTCTTGTCATGGAGAGGTTCCCCAGTAAAATTGCTGCTGCAGTTTTTGCCACCGCTGACATGCCTGGTCTAAATCTCAGTTTGGCCACTATATCTGAAGAGTTTGGTAAAGATACAGATTTTATGGACACTCAATATAGATTTGATGATGGATCCGGCAGACCAGCAACCGCAGTGTTCTTCGGGCCGAAGTTTTTGGCGTCAAAATTATACCAACTATCGCCGCCAGAGGTATCAATTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

166

Amino Acids

17.85

Weight (kDa)

5.65

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 3 - 114 3.6e-17 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 4 - 139 2.3e-17 Alpha/beta hydrolase family
Hydrolase_4 PF12146 4 - 101 1e-11 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 150
AciI CCGC 7 cut(s) 75, 78, 148, 203, 306, 423, 476
AclWI GGATC 3 cut(s) 121, 399, 412
AcoI YGGCCR 2 cut(s) 31, 336
AcuI CTGAAG 1 cut(s) 369
AcyI GRCGYC 1 cut(s) 452
AfaI GTAC 2 cut(s) 53, 138
AfiI CCNNNNNNNGG 2 cut(s) 116, 133
AjnI CCWGG 2 cut(s) 109, 316
AluBI AGCT 4 cut(s) 58, 184, 234, 495
AluI AGCT 4 cut(s) 58, 184, 234, 495
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 3 cut(s) 121, 399, 412
AoxI GGCC 3 cut(s) 31, 336, 437
ApeKI GCWGC 2 cut(s) 287, 290
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 437
AsuNHI GCTAGC 1 cut(s) 58
BalI TGGCCA 2 cut(s) 33, 338
BamHI GGATCC 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 236
BbvI GCAGC 2 cut(s) 274, 277
BccI CCATC 1 cut(s) 395
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 2 cut(s) 111, 318
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 4 cut(s) 59, 101, 221, 496
BfmI CTRYAG 1 cut(s) 291
BfoI RGCGCY 1 cut(s) 30
BisI GCNGC 4 cut(s) 78, 288, 291, 476
BlsI GCNGC 4 cut(s) 79, 289, 292, 477
Bme1390I CCNGG 2 cut(s) 111, 318
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 2 cut(s) 272, 406
BmrFI CCNGG 2 cut(s) 111, 318
BmrI ACTGGG 1 cut(s) 270
BmtI GCTAGC 1 cut(s) 62
BmuI ACTGGG 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 452
BsaJI CCNNGG 2 cut(s) 34, 109
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 133
Bse1I ACTGG 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 153
BseBI CCWGG 2 cut(s) 111, 318
BseDI CCNNGG 2 cut(s) 34, 109
BseLI CCNNNNNNNGG 2 cut(s) 116, 133
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 343
BseNI ACTGG 1 cut(s) 276
BseXI GCAGC 2 cut(s) 274, 277
BshFI GGCC 3 cut(s) 33, 338, 439
BsiSI CCGG 1 cut(s) 408
BslI CCNNNNNNNGG 2 cut(s) 116, 133
BsmAI GTCTC 1 cut(s) 198
BsnI GGCC 3 cut(s) 33, 338, 439
Bsp143I GATC 3 cut(s) 113, 177, 404
BspACI CCGC 7 cut(s) 75, 78, 148, 203, 306, 423, 476
BspANI GGCC 3 cut(s) 33, 338, 439
BspCNI CTCAG 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 272, 406
BspMAI CTGCAG 1 cut(s) 295
BspOI GCTAGC 1 cut(s) 62
BspPI GGATC 3 cut(s) 121, 399, 412
BsrBI CCGCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 153
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 34, 109
BssMI GATC 3 cut(s) 113, 177, 404
BssNI GRCGYC 1 cut(s) 452
Bst2UI CCWGG 2 cut(s) 111, 318
Bst6I CTCTTC 1 cut(s) 345
BstACI GRCGYC 1 cut(s) 452
BstAPI GCANNNNNTGC 2 cut(s) 13, 299
BstC8I GCNNGC 2 cut(s) 31, 60
BstDEI CTNAG 1 cut(s) 329
BstDSI CCRYGG 1 cut(s) 34
BstENI CCTNNNNNAGG 2 cut(s) 114, 131
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 3 cut(s) 116, 180, 407
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 3 cut(s) 113, 177, 404
BstMWI GCNNNNNNNGC 2 cut(s) 13, 299
BstNI CCWGG 2 cut(s) 111, 318
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 2 cut(s) 109, 316
BstSFI CTRYAG 1 cut(s) 291
BstV1I GCAGC 2 cut(s) 274, 277
BstV2I GAAGAC 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BsuRI GGCC 3 cut(s) 33, 338, 439
BtgI CCRYGG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 2 cut(s) 31, 60
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 437
CseI GACGC 1 cut(s) 441
Csp6I GTAC 2 cut(s) 52, 137
CviAII CATG 4 cut(s) 42, 187, 262, 313
CviJI RGCY 9 cut(s) 33, 58, 98, 172, 184, 234, 338, 439, 495
CviKI_1 RGCY 9 cut(s) 33, 58, 98, 172, 184, 234, 338, 439, 495
CviQI GTAC 2 cut(s) 52, 137
DdeI CTNAG 1 cut(s) 329
DpnI GATC 3 cut(s) 115, 179, 406
DpnII GATC 3 cut(s) 113, 177, 404
EaeI YGGCCR 2 cut(s) 31, 336
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco57I CTGAAG 1 cut(s) 369
EcoNI CCTNNNNNAGG 2 cut(s) 114, 131
EcoRII CCWGG 2 cut(s) 109, 316
FaeI CATG 4 cut(s) 45, 190, 265, 316
FaiI YATR 9 cut(s) 43, 122, 188, 263, 314, 344, 377, 390, 463
FatI CATG 4 cut(s) 41, 186, 261, 312
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 4 cut(s) 78, 288, 291, 476
Fsp4HI GCNGC 4 cut(s) 78, 288, 291, 476
FspBI CTAG 4 cut(s) 59, 101, 221, 496
GlaI GCGC 1 cut(s) 28
GluI GCNGC 4 cut(s) 78, 288, 291, 476
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 3 cut(s) 33, 338, 439
HapII CCGG 1 cut(s) 408
HgaI GACGC 1 cut(s) 441
HhaI GCGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 452
Hin1II CATG 4 cut(s) 45, 190, 265, 316
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 1 cut(s) 191
HpaII CCGG 1 cut(s) 408
Hpy188I TCNGA 2 cut(s) 169, 349
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 2 cut(s) 158, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 299
HpyF3I CTNAG 1 cut(s) 329
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 452
Hsp92II CATG 4 cut(s) 45, 190, 265, 316
HspAI GCGC 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 3 cut(s) 113, 177, 404
LmnI GCTCC 2 cut(s) 38, 155
Lsp1109I GCAGC 2 cut(s) 274, 277
MaeI CTAG 4 cut(s) 59, 101, 221, 496
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 3 cut(s) 83, 91, 227
MalI GATC 3 cut(s) 115, 179, 406
MbiI CCGCTC 1 cut(s) 150
MboI GATC 3 cut(s) 113, 177, 404
MboII GAAGA 3 cut(s) 236, 362, 424
MflI RGATCY 1 cut(s) 404
MlsI TGGCCA 2 cut(s) 33, 338
MluCI AATT 3 cut(s) 282, 458, 489
MluNI TGGCCA 2 cut(s) 33, 338
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 4 cut(s) 116, 127, 261, 475
Mox20I TGGCCA 2 cut(s) 33, 338
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 2 cut(s) 33, 338
Msp20I TGGCCA 2 cut(s) 33, 338
MspA1I CMGCKG 2 cut(s) 80, 308
MspI CCGG 1 cut(s) 408
MspR9I CCNGG 2 cut(s) 111, 318
MvaI CCWGG 2 cut(s) 111, 318
MwoI GCNNNNNNNGC 2 cut(s) 13, 299
NdeII GATC 3 cut(s) 113, 177, 404
NheI GCTAGC 1 cut(s) 58
NlaIII CATG 4 cut(s) 45, 190, 265, 316
NlaIV GGNNCC 2 cut(s) 272, 406
NmuCI GTSAC 3 cut(s) 83, 91, 227
NspI RCATGY 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 4 cut(s) 79, 289, 292, 477
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Psp6I CCWGG 2 cut(s) 109, 316
PspGI CCWGG 2 cut(s) 109, 316
PspN4I GGNNCC 2 cut(s) 272, 406
PspPI GGNCC 1 cut(s) 437
PstI CTGCAG 1 cut(s) 295
PsuI RGATCY 1 cut(s) 404
RsaI GTAC 2 cut(s) 53, 138
RsaNI GTAC 2 cut(s) 52, 137
SatI GCNGC 4 cut(s) 78, 288, 291, 476
Sau3AI GATC 3 cut(s) 113, 177, 404
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 2 cut(s) 111, 318
SfcI CTRYAG 1 cut(s) 291
Sse9I AATT 3 cut(s) 282, 458, 489
SsiI CCGC 7 cut(s) 75, 78, 148, 203, 306, 423, 476
SspMI CTAG 4 cut(s) 59, 101, 221, 496
StyD4I CCNGG 2 cut(s) 109, 316
TaiI ACGT 1 cut(s) 93
TasI AATT 3 cut(s) 282, 458, 489
TauI GCSGC 2 cut(s) 80, 478
TscAI CASTG 1 cut(s) 432
TseFI GTSAC 3 cut(s) 83, 91, 227
TseI GCWGC 2 cut(s) 287, 290
Tsp45I GTSAC 3 cut(s) 83, 91, 227
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 51, 146
TspRI CASTG 1 cut(s) 432
XagI CCTNNNNNAGG 2 cut(s) 114, 131
XceI RCATGY 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 4 cut(s) 59, 101, 221, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.