Rorug02G0118100

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000171
Physical Location & Seq
Forward (+)
10081176 .. 10081553
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0118100.1

Sequence Viewer

Length: 378 bp
ATGCACACTCAGTGTGTCTTGTCAGGCCTAGGGAGGTGGCGAGCTATTTGTTTAATCAAATGGACGCAACCTCCTAGTGGCAGAATGAAACGAAGTGTCGTCGGATTTGTTTCCGTGTGGCAACATAGTTGGAAAGCTGTGCTATTTGTACTGATGCTTCTTCGTCATAGAGTTATCTTTCCGGTATGTCACCGCTATGTCAAAGCAAATAGAGTAGCCATTCGTGCACTCTTTGCTAGTTGGTGCATGTTAGAATACATTGATTTTGTAGGGACTGTTGGTATTATTTCAGGATGTTCTCTCTATGCTTATTGTAATTTGGGGTTCAGGCTTTACGTCCCCTCCTTGTATTCTGCAGTTTCATTAATCAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

125

Amino Acids

14.29

Weight (kDa)

10.13

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 193
AdeI CACNNNGTG 1 cut(s) 12
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 77
AluBI AGCT 2 cut(s) 44, 137
AluI AGCT 2 cut(s) 44, 137
Alw21I GWGCWC 1 cut(s) 229
Alw44I GTGCAC 1 cut(s) 225
AoxI GGCC 1 cut(s) 25
ApaLI GTGCAC 1 cut(s) 225
AseI ATTAAT 1 cut(s) 365
AspA2I CCTAGG 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 182
AvrII CCTAGG 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 229
BarI GAAGNNNNNNTAC 2 cut(s) 141, 173
Bbv12I GWGCWC 1 cut(s) 229
BfaI CTAG 3 cut(s) 29, 75, 237
BfmI CTRYAG 1 cut(s) 354
BlnI CCTAGG 1 cut(s) 28
BmsI GCATC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 28
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 4 cut(s) 55, 85, 326, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 229
BshFI GGCC 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 229
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 2 cut(s) 286, 323
BslI CCNNNNNNNGG 1 cut(s) 77
BsmFI GGGAC 2 cut(s) 286, 323
BsnI GGCC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 229
BspACI CCGC 1 cut(s) 193
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 22
BspMAI CTGCAG 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 277
BstAPI GCANNNNNTGC 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 299
BstMWI GCNNNNNNNGC 2 cut(s) 224, 233
BstNSI RCATGY 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 354
BstSLI GKGCMC 1 cut(s) 229
BsuRI GGCC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 299
BtsIMutI CAGTG 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 42
CseI GACGC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 149
CviAII CATG 1 cut(s) 247
CviJI RGCY 6 cut(s) 27, 44, 137, 218, 331, 374
CviKI_1 RGCY 6 cut(s) 27, 44, 137, 218, 331, 374
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 1 cut(s) 9
DraIII CACNNNGTG 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 28
Eco147I AGGCCT 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 1 cut(s) 250
FaiI YATR 6 cut(s) 126, 168, 187, 198, 248, 306
FaqI GGGAC 2 cut(s) 286, 323
FatI CATG 1 cut(s) 246
FokI GGATG 1 cut(s) 306
FspBI CTAG 3 cut(s) 29, 75, 237
HaeIII GGCC 1 cut(s) 27
HapII CCGG 1 cut(s) 182
HgaI GACGC 1 cut(s) 73
Hin1II CATG 1 cut(s) 250
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 291
Hpy8I GTNNAC 1 cut(s) 227
Hpy99I CGWCG 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 4 cut(s) 4, 227, 246, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 233
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 1 cut(s) 250
LpnPI CCDG 4 cut(s) 9, 195, 276, 313
LweI GCATC 1 cut(s) 144
MaeI CTAG 3 cut(s) 29, 75, 237
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 188
MboII GAAGA 1 cut(s) 152
MhlI GDGCHC 1 cut(s) 229
MluCI AATT 1 cut(s) 316
MmeI TCCRAC 2 cut(s) 82, 110
MnlI CCTC 3 cut(s) 27, 81, 352
MseI TTAA 2 cut(s) 53, 365
MslI CAYNNNNRTG 1 cut(s) 195
MspI CCGG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 224, 233
NlaIII CATG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 188
NspI RCATGY 1 cut(s) 250
PceI AGGCCT 1 cut(s) 27
PshBI ATTAAT 1 cut(s) 365
PstI CTGCAG 1 cut(s) 358
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 2 cut(s) 53, 365
SduI GDGCHC 1 cut(s) 229
SetI ASST 5 cut(s) 38, 46, 73, 139, 339
SfaNI GCATC 1 cut(s) 144
SfcI CTRYAG 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 195
Sse9I AATT 1 cut(s) 316
SseBI AGGCCT 1 cut(s) 27
SsiI CCGC 1 cut(s) 193
SspMI CTAG 3 cut(s) 29, 75, 237
StuI AGGCCT 1 cut(s) 27
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 1 cut(s) 339
TasI AATT 1 cut(s) 316
TatI WGTACW 1 cut(s) 148
Tru1I TTAA 2 cut(s) 53, 365
Tru9I TTAA 2 cut(s) 53, 365
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 2 cut(s) 101, 351
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 1 cut(s) 17
VneI GTGCAC 1 cut(s) 225
VspI ATTAAT 1 cut(s) 365
XceI RCATGY 1 cut(s) 250
XmaJI CCTAGG 1 cut(s) 28
XspI CTAG 3 cut(s) 29, 75, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.