MD02G1162900.v1.1

Salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000171
Physical Location & Seq
Forward (+)
13800327 .. 13801987
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1162900.v1.1.491

Sequence Viewer

Length: 843 bp
ATGGAGAACATAACAGAGAAGCTTTGCTTAGCAAAAGCTAGTACCTCAACCCCATCCTCGCCCCCCATTCACAACCAAACTCAAAGTCCAAAACGTTTTGTGTTGATACATGGAGCTTGTCATGGAGCATGGAGCTGGTATAAGGTGGCAACTCTCCTCAAGGACTCAGGTCATCATGTCACAGCTCTAGACTTGGGAGCATCCGGGATCAACCCGATTCAGGTACAGCAACTGCCTTCGTTATCGGAATACGTCGAGCCTTTGACAAAGCTCATGGTGTCTCTACCACCAAATGAAAAGGTTATCCTTGTGGCTCACAGCTTTGGTGGAGCCGTCATATCTATTTTCATGGAGAGGTTTCCGCATAAAATTGCTGCTGCGGTATATGTTACGGCTGTCATGTCTGGTCCTACTCTCAATTTCTCAACTATACAATCAGAGATTAAGAAAAGATTCCATTATATGGATTCTCAATTCAGATATGATAACGGAACCAATAACCCAGCAACATCTTTTCTCTTTGGGCCCAAGGACTTGGCAACAAGCTTGTACCAGCTCTCACCACCACAGGATTTAACCCTAGCGTTATCGTTGGTGAGATTTTTTCCTCGCTACAATTATGATGTTATAAAGCTCACAAAAGAGAAATATGGATCAGTTCCTAGAGTATTCATCGTGTCCGGCGAAGACCATGCTATAGTAATGGATGTGCAAAATTACATGATAAAAAGCAATCCGCCAAATGAAGTGAAAGTGATAAACGGTTCTGATCACATGGTCATGGTCTCTAAACCCGTAGAGTTGTTCTTCCATCTCCAAAACACTGCTGAGAAATATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

281

Amino Acids

31.2

Weight (kDa)

8.7

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 32 - 265 2.2e-19 alpha/beta hydrolase fold
Hydrolase_4 PF12146 32 - 161 7.8e-11 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 33 - 269 4.3e-19 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 629
AccB7I CCANNNNNTGG 1 cut(s) 463
AciI CCGC 3 cut(s) 362, 380, 737
AclI AACGTT 1 cut(s) 94
AclWI GGATC 2 cut(s) 215, 661
AfaI GTAC 3 cut(s) 43, 225, 551
AfiI CCNNNNNNNGG 2 cut(s) 220, 463
Alw26I GTCTC 2 cut(s) 285, 790
AlwI GGATC 2 cut(s) 215, 661
AlwNI CAGNNNCTG 1 cut(s) 232
AoxI GGCC 1 cut(s) 524
ApaI GGGCCC 1 cut(s) 528
ApeKI GCWGC 2 cut(s) 374, 377
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
Asp700I GAANNNNTTC 1 cut(s) 452
AspS9I GGNCC 3 cut(s) 407, 524, 525
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 552, 607
AvaII GGWCC 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 528
BanII GRGCYC 1 cut(s) 528
BbsI GAAGAC 1 cut(s) 693
BbvI GCAGC 2 cut(s) 361, 364
BccI CCATC 2 cut(s) 61, 819
BceAI ACGGC 2 cut(s) 317, 408
BcgI CGANNNNNNTGC 2 cut(s) 674, 708
BclI TGATCA 1 cut(s) 769
BcnI CCSGG 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 285, 790
BfaI CTAG 4 cut(s) 39, 188, 581, 663
BfmI CTRYAG 1 cut(s) 696
BisI GCNGC 2 cut(s) 375, 378
BlpI GCTNAGC 1 cut(s) 28
BlsI GCNGC 2 cut(s) 376, 379
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 407
BmgT120I GGNCC 3 cut(s) 407, 524, 525
BmiI GGNNCC 3 cut(s) 331, 493, 526
BmrFI CCNGG 1 cut(s) 205
BmsI GCATC 1 cut(s) 209
BoxI GACNNNNGTC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 693
Bpu1102I GCTNAGC 1 cut(s) 28
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 205
BsaI GGTCTC 1 cut(s) 790
BsaJI CCNNGG 1 cut(s) 528
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 463
BseDI CCNNGG 1 cut(s) 528
BseGI GGATG 3 cut(s) 53, 200, 712
BseLI CCNNNNNNNGG 2 cut(s) 220, 463
BseMII CTCAG 2 cut(s) 180, 819
BseRI GAGGAG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 528
BseXI GCAGC 2 cut(s) 361, 364
BseYI CCCAGC 1 cut(s) 502
BshFI GGCC 1 cut(s) 526
BsiSI CCGG 2 cut(s) 204, 681
BslI CCNNNNNNNGG 2 cut(s) 220, 463
BsmAI GTCTC 2 cut(s) 285, 790
BsnI GGCC 1 cut(s) 526
Bso31I GGTCTC 1 cut(s) 790
Bsp120I GGGCCC 1 cut(s) 524
Bsp1286I GDGCHC 1 cut(s) 528
Bsp143I GATC 3 cut(s) 207, 653, 769
Bsp1720I GCTNAGC 1 cut(s) 28
BspACI CCGC 3 cut(s) 362, 380, 737
BspANI GGCC 1 cut(s) 526
BspCNI CTCAG 2 cut(s) 179, 820
BspLI GGNNCC 3 cut(s) 331, 493, 526
BspPI GGATC 2 cut(s) 215, 661
BspTNI GGTCTC 1 cut(s) 790
BssECI CCNNGG 1 cut(s) 528
BssMI GATC 3 cut(s) 207, 653, 769
BssT1I CCWWGG 1 cut(s) 528
Bst4CI ACNGT 1 cut(s) 764
BstDEI CTNAG 3 cut(s) 28, 166, 828
BstF5I GGATG 3 cut(s) 53, 200, 712
BstKTI GATC 3 cut(s) 210, 656, 772
BstMAI GTCTC 2 cut(s) 285, 790
BstMBI GATC 3 cut(s) 207, 653, 769
BstPAI GACNNNNGTC 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 696
BstSLI GKGCMC 1 cut(s) 528
BstV1I GCAGC 2 cut(s) 361, 364
BstV2I GAAGAC 1 cut(s) 693
BstXI CCANNNNNNTGG 1 cut(s) 535
BsuRI GGCC 1 cut(s) 526
BtsCI GGATG 3 cut(s) 53, 200, 712
BtsI GCAGTG 1 cut(s) 822
BtsIMutI CAGTG 1 cut(s) 822
CaiI CAGNNNCTG 1 cut(s) 232
Cfr13I GGNCC 3 cut(s) 407, 524, 525
Csp6I GTAC 3 cut(s) 42, 224, 550
CviQI GTAC 3 cut(s) 42, 224, 550
DdeI CTNAG 3 cut(s) 28, 166, 828
DpnI GATC 3 cut(s) 209, 655, 771
DpnII GATC 3 cut(s) 207, 653, 769
EciI GGCGGA 1 cut(s) 726
Eco130I CCWWGG 1 cut(s) 528
Eco24I GRGCYC 1 cut(s) 528
Eco31I GGTCTC 1 cut(s) 790
Eco47I GGWCC 1 cut(s) 407
EcoT14I CCWWGG 1 cut(s) 528
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 1 cut(s) 528
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FbaI TGATCA 1 cut(s) 769
Fnu4HI GCNGC 2 cut(s) 375, 378
FokI GGATG 3 cut(s) 40, 187, 719
FriOI GRGCYC 1 cut(s) 528
Fsp4HI GCNGC 2 cut(s) 375, 378
FspBI CTAG 4 cut(s) 39, 188, 581, 663
GluI GCNGC 2 cut(s) 375, 378
GsaI CCCAGC 1 cut(s) 506
HaeIII GGCC 1 cut(s) 526
HapII CCGG 2 cut(s) 204, 681
HindIII AAGCTT 2 cut(s) 20, 544
HinfI GANTC 4 cut(s) 164, 217, 453, 467
HpaII CCGG 2 cut(s) 204, 681
HphI GGTGA 2 cut(s) 552, 607
Hpy188I TCNGA 4 cut(s) 247, 439, 479, 769
Hpy188III TCNNGA 1 cut(s) 188
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 1 cut(s) 764
HpyCH4IV ACGT 2 cut(s) 94, 252
HpyCH4V TGCA 1 cut(s) 712
HpyF3I CTNAG 3 cut(s) 28, 166, 828
HpySE526I ACGT 2 cut(s) 94, 252
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 3 cut(s) 207, 653, 769
LmnI GCTCC 5 cut(s) 113, 125, 132, 197, 329
LpnPI CCDG 9 cut(s) 121, 153, 206, 217, 390, 516, 554, 566, 694
Lsp1109I GCAGC 2 cut(s) 361, 364
LweI GCATC 1 cut(s) 209
MaeI CTAG 4 cut(s) 39, 188, 581, 663
MaeII ACGT 2 cut(s) 94, 252
MaeIII GTNAC 2 cut(s) 178, 388
MalI GATC 3 cut(s) 209, 655, 771
MboI GATC 3 cut(s) 207, 653, 769
MboII GAAGA 2 cut(s) 698, 799
MhlI GDGCHC 1 cut(s) 528
MluCI AATT 5 cut(s) 369, 418, 473, 616, 715
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 5 cut(s) 55, 67, 167, 348, 618
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 2 cut(s) 444, 575
MslI CAYNNNNRTG 1 cut(s) 779
MspI CCGG 2 cut(s) 204, 681
MspR9I CCNGG 1 cut(s) 205
NciI CCSGG 1 cut(s) 205
NdeII GATC 3 cut(s) 207, 653, 769
NlaIV GGNNCC 3 cut(s) 331, 493, 526
NmuCI GTSAC 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 681
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 3 cut(s) 217, 453, 467
PflMI CCANNNNNTGG 1 cut(s) 463
PfoI TCCNGGA 1 cut(s) 203
PkrI GCNGC 2 cut(s) 376, 379
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PshAI GACNNNNGTC 1 cut(s) 168
PsiI TTATAA 1 cut(s) 629
Psp1406I AACGTT 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 502
PspN4I GGNNCC 3 cut(s) 331, 493, 526
PspOMI GGGCCC 1 cut(s) 524
PspPI GGNCC 3 cut(s) 407, 524, 525
PstNI CAGNNNCTG 1 cut(s) 232
RsaI GTAC 3 cut(s) 43, 225, 551
RsaNI GTAC 3 cut(s) 42, 224, 550
RseI CAYNNNNRTG 1 cut(s) 779
SaqAI TTAA 2 cut(s) 444, 575
SatI GCNGC 2 cut(s) 375, 378
Sau3AI GATC 3 cut(s) 207, 653, 769
Sau96I GGNCC 3 cut(s) 407, 524, 525
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 1 cut(s) 528
SfaNI GCATC 1 cut(s) 209
SfcI CTRYAG 1 cut(s) 696
SinI GGWCC 1 cut(s) 407
SmiMI CAYNNNNRTG 1 cut(s) 779
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 5 cut(s) 369, 418, 473, 616, 715
SsiI CCGC 3 cut(s) 362, 380, 737
SspI AATATT 1 cut(s) 836
SspMI CTAG 4 cut(s) 39, 188, 581, 663
StyD4I CCNGG 1 cut(s) 203
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 1 cut(s) 764
TaiI ACGT 2 cut(s) 97, 255
TaqI TCGA 1 cut(s) 255
TasI AATT 5 cut(s) 369, 418, 473, 616, 715
TfiI GAWTC 3 cut(s) 217, 453, 467
Tru1I TTAA 2 cut(s) 444, 575
Tru9I TTAA 2 cut(s) 444, 575
TscAI CASTG 1 cut(s) 829
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 2 cut(s) 374, 377
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 5 cut(s) 309, 337, 661, 759, 828
TspGWI ACGGA 1 cut(s) 504
TspRI CASTG 1 cut(s) 829
Van91I CCANNNNNTGG 1 cut(s) 463
VpaK11BI GGWCC 1 cut(s) 407
XbaI TCTAGA 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 4 cut(s) 39, 188, 581, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.