pycom02g12790

Salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000171
Physical Location & Seq
Forward (+)
9346009 .. 9348074
2066 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g12790.2

Sequence Viewer

Length: 807 bp
ATGATAGAGAAAATATTATTGGAGAACATGACAGAGAAGCTCCTTTTGTTTTTTCTTTTATTTATTTGCTTGGCAAAAGCTAGAACCTCAACCCCATCCCCGCCCTCCAACATTCACAACCAAACTCAAAGTCCAAAACATTTTGTATTGATACATGGAGCTTGTCATGGAGCATGGAGCTGGTATAAGGTGGCAACTCTCCTCAAGGACTCAGGTCACAATGTCACAGCTCTAGACTTGGGAGCATCCGGGATCAACCCGATTCAGGTACAGCAGCTCCCTTCGTTGTCGGAATTCGTCGAGCCCTTAACAAAGCTCATGGTGTCTCTACCACCAAATGAAAAGGTTATCCTTGTGGGTCACAGCATGGGGGGCGCAGTCATATCTATTACCATGGAGAGGTTCCCTCATAAAATTGTTGCTGCAGTATATGTCACGGCTTTTATGTATGGTCCCACTCTCAATTTCTCAACTATATATGCAGAGCTAATACTTTTTTTGTTTTATGCTTGTAATGGACAGGATTTAACTCTAGCACTATCGTTGGTGAGATATTTTCCTTTATATAATTACGATGTAATAAAACTCACAGAGAAGAAGTATGGATCAGTTCCTAGAGTATTCATCGTGGCCAACCAGGACCGTACGCTAATGTTGGATGTGCAAAATTACATGATCAAGAACAATCCCCCAAATGAAGTTAAAGTGATAAACGGTTCTTTCTTTGAGATCGATCATATGGTCATGTTCTCTAAACCAGTGGAGCTGTTCTGCCACCTCCAAAGTATTGCTGAGAAGTATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

269

Amino Acids

30.19

Weight (kDa)

7.71

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 101
AclWI GGATC 2 cut(s) 260, 613
AcoI YGGCCR 1 cut(s) 630
AcsI RAATTY 1 cut(s) 293
AfaI GTAC 2 cut(s) 270, 646
AfiI CCNNNNNNNGG 2 cut(s) 265, 399
AjnI CCWGG 1 cut(s) 636
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 9 cut(s) 40, 80, 161, 180, 230, 277, 316, 487, 766
AluI AGCT 9 cut(s) 40, 80, 161, 180, 230, 277, 316, 487, 766
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 2 cut(s) 260, 613
AoxI GGCC 1 cut(s) 630
ApeKI GCWGC 2 cut(s) 274, 422
ApoI RAATTY 1 cut(s) 293
ArsI GACNNNNNNTTYG 2 cut(s) 115, 147
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 2 cut(s) 452, 640
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 559
AvaII GGWCC 2 cut(s) 452, 640
BalI TGGCCA 1 cut(s) 632
BanII GRGCYC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 286, 409
BccI CCATC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 453
BciT130I CCWGG 1 cut(s) 638
BclI TGATCA 1 cut(s) 675
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 4 cut(s) 81, 233, 533, 615
BfmI CTRYAG 1 cut(s) 423
BisI GCNGC 2 cut(s) 275, 423
BlsI GCNGC 2 cut(s) 276, 424
Bme1390I CCNGG 2 cut(s) 250, 638
Bme18I GGWCC 2 cut(s) 452, 640
BmgT120I GGNCC 2 cut(s) 452, 640
BmiI GGNNCC 2 cut(s) 404, 454
BmrFI CCNGG 2 cut(s) 250, 638
BmsI GCATC 1 cut(s) 254
BoxI GACNNNNGTC 1 cut(s) 213
BplI GAGNNNNNCTC 2 cut(s) 391, 423
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 250
Bsa29I ATCGAT 1 cut(s) 732
BsaJI CCNNGG 1 cut(s) 393
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 399
Bse1I ACTGG 1 cut(s) 758
BseBI CCWGG 1 cut(s) 638
BseCI ATCGAT 1 cut(s) 732
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 3 cut(s) 95, 245, 664
BseLI CCNNNNNNNGG 2 cut(s) 265, 399
BseMII CTCAG 2 cut(s) 225, 783
BseNI ACTGG 1 cut(s) 758
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 2 cut(s) 286, 409
BshFI GGCC 1 cut(s) 632
BshVI ATCGAT 1 cut(s) 732
BsiSI CCGG 1 cut(s) 249
BsiWI CGTACG 1 cut(s) 644
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 2 cut(s) 265, 399
BsmAI GTCTC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 438
BsnI GGCC 1 cut(s) 632
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 5 cut(s) 252, 605, 675, 729, 733
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 1 cut(s) 101
BspANI GGCC 1 cut(s) 632
BspCNI CTCAG 2 cut(s) 224, 784
BspDI ATCGAT 1 cut(s) 732
BspLI GGNNCC 2 cut(s) 404, 454
BspMAI CTGCAG 1 cut(s) 427
BspPI GGATC 2 cut(s) 260, 613
BsrI ACTGG 1 cut(s) 758
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 5 cut(s) 252, 605, 675, 729, 733
BssT1I CCWWGG 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 638
Bst4CI ACNGT 2 cut(s) 644, 716
BstDEI CTNAG 2 cut(s) 211, 792
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 3 cut(s) 95, 245, 664
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 5 cut(s) 255, 608, 678, 732, 736
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 5 cut(s) 252, 605, 675, 729, 733
BstMWI GCNNNNNNNGC 1 cut(s) 372
BstNI CCWGG 1 cut(s) 638
BstPAI GACNNNNGTC 1 cut(s) 213
BstSCI CCNGG 2 cut(s) 248, 636
BstSFI CTRYAG 1 cut(s) 423
BstV1I GCAGC 2 cut(s) 286, 409
Bsu15I ATCGAT 1 cut(s) 732
BsuRI GGCC 1 cut(s) 632
BsuTUI ATCGAT 1 cut(s) 732
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 3 cut(s) 95, 245, 664
BtsIMutI CAGTG 1 cut(s) 765
CfoI GCGC 1 cut(s) 377
Cfr13I GGNCC 2 cut(s) 452, 640
ClaI ATCGAT 1 cut(s) 732
Csp6I GTAC 2 cut(s) 269, 645
CviAII CATG 9 cut(s) 28, 155, 167, 174, 319, 367, 394, 673, 745
CviQI GTAC 2 cut(s) 269, 645
DdeI CTNAG 2 cut(s) 211, 792
DpnI GATC 5 cut(s) 254, 607, 677, 731, 735
DpnII GATC 5 cut(s) 252, 605, 675, 729, 733
EaeI YGGCCR 1 cut(s) 630
Eco130I CCWWGG 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 306
Eco47I GGWCC 2 cut(s) 452, 640
EcoRI GAATTC 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 636
EcoT14I CCWWGG 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 9 cut(s) 31, 158, 170, 177, 322, 370, 397, 676, 748
FaqI GGGAC 1 cut(s) 438
FatI CATG 9 cut(s) 27, 154, 166, 173, 318, 366, 393, 672, 744
FauI CCCGC 1 cut(s) 108
FauNDI CATATG 1 cut(s) 738
FbaI TGATCA 1 cut(s) 675
Fnu4HI GCNGC 2 cut(s) 275, 423
FokI GGATG 3 cut(s) 82, 232, 671
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 2 cut(s) 275, 423
FspBI CTAG 4 cut(s) 81, 233, 533, 615
GlaI GCGC 1 cut(s) 376
GluI GCNGC 2 cut(s) 275, 423
HaeIII GGCC 1 cut(s) 632
HapII CCGG 1 cut(s) 249
HhaI GCGC 1 cut(s) 377
Hin1II CATG 9 cut(s) 31, 158, 170, 177, 322, 370, 397, 676, 748
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HinfI GANTC 2 cut(s) 209, 262
HpaII CCGG 1 cut(s) 249
HphI GGTGA 1 cut(s) 559
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 2 cut(s) 233, 679
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 2 cut(s) 644, 716
HpyCH4V TGCA 3 cut(s) 425, 482, 664
HpyF10VI GCNNNNNNNGC 1 cut(s) 372
HpyF3I CTNAG 2 cut(s) 211, 792
Hsp92II CATG 9 cut(s) 31, 158, 170, 177, 322, 370, 397, 676, 748
HspAI GCGC 1 cut(s) 375
Ksp22I TGATCA 1 cut(s) 675
Kzo9I GATC 5 cut(s) 252, 605, 675, 729, 733
LmnI GCTCC 7 cut(s) 45, 158, 170, 177, 242, 282, 763
LpnPI CCDG 8 cut(s) 166, 198, 251, 262, 506, 623, 650, 771
Lsp1109I GCAGC 2 cut(s) 286, 409
LweI GCATC 1 cut(s) 254
MaeI CTAG 4 cut(s) 81, 233, 533, 615
MaeIII GTNAC 4 cut(s) 215, 223, 359, 433
MalI GATC 5 cut(s) 254, 607, 677, 731, 735
MboI GATC 5 cut(s) 252, 605, 675, 729, 733
MboII GAAGA 1 cut(s) 607
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 632
MluCI AATT 5 cut(s) 293, 414, 463, 568, 667
MluNI TGGCCA 1 cut(s) 632
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 3 cut(s) 132, 270, 636
MnlI CCTC 6 cut(s) 97, 115, 212, 393, 417, 788
Mox20I TGGCCA 1 cut(s) 632
MscI TGGCCA 1 cut(s) 632
MseI TTAA 3 cut(s) 308, 527, 702
Msp20I TGGCCA 1 cut(s) 632
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 2 cut(s) 250, 638
MvaI CCWGG 1 cut(s) 638
MwoI GCNNNNNNNGC 1 cut(s) 372
NciI CCSGG 1 cut(s) 250
NcoI CCATGG 1 cut(s) 393
NdeI CATATG 1 cut(s) 738
NdeII GATC 5 cut(s) 252, 605, 675, 729, 733
NlaIII CATG 9 cut(s) 31, 158, 170, 177, 322, 370, 397, 676, 748
NlaIV GGNNCC 2 cut(s) 404, 454
NmuCI GTSAC 4 cut(s) 215, 223, 359, 433
PfeI GAWTC 1 cut(s) 262
Pfl23II CGTACG 1 cut(s) 644
PfoI TCCNGGA 1 cut(s) 248
PkrI GCNGC 2 cut(s) 276, 424
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PshAI GACNNNNGTC 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 636
PspGI CCWGG 1 cut(s) 636
PspLI CGTACG 1 cut(s) 644
PspN4I GGNNCC 2 cut(s) 404, 454
PspPI GGNCC 2 cut(s) 452, 640
PstI CTGCAG 1 cut(s) 427
RsaI GTAC 2 cut(s) 270, 646
RsaNI GTAC 2 cut(s) 269, 645
SaqAI TTAA 3 cut(s) 308, 527, 702
SatI GCNGC 2 cut(s) 275, 423
Sau3AI GATC 5 cut(s) 252, 605, 675, 729, 733
Sau96I GGNCC 2 cut(s) 452, 640
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 250, 638
SduI GDGCHC 1 cut(s) 306
SfaNI GCATC 1 cut(s) 254
SfcI CTRYAG 1 cut(s) 423
SinI GGWCC 2 cut(s) 452, 640
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 5 cut(s) 293, 414, 463, 568, 667
SsiI CCGC 1 cut(s) 101
SspI AATATT 1 cut(s) 15
SspMI CTAG 4 cut(s) 81, 233, 533, 615
StyD4I CCNGG 2 cut(s) 248, 636
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 2 cut(s) 644, 716
TaqI TCGA 2 cut(s) 300, 732
TasI AATT 5 cut(s) 293, 414, 463, 568, 667
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 3 cut(s) 308, 527, 702
Tru9I TTAA 3 cut(s) 308, 527, 702
TscAI CASTG 1 cut(s) 765
TseFI GTSAC 4 cut(s) 215, 223, 359, 433
TseI GCWGC 2 cut(s) 274, 422
Tsp45I GTSAC 4 cut(s) 215, 223, 359, 433
TspDTI ATGAA 4 cut(s) 354, 613, 711, 792
TspRI CASTG 1 cut(s) 765
VpaK11BI GGWCC 2 cut(s) 452, 640
XapI RAATTY 1 cut(s) 293
XbaI TCTAGA 1 cut(s) 232
XspI CTAG 4 cut(s) 81, 233, 533, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.