Rmu_sc0001085.1_g000004

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001085.1
OG0000171
Physical Location & Seq
Forward (+)
11603 .. 12704
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001085.1_g000004.1.cds

Sequence Viewer

Length: 432 bp
atggcttctctaccaccgcacgaaatggttatccttgttagccacagcttgggtggaatccccatatctattgccatggagaccttccctcataaaattgctgctgcggtttttgccactgctgacatgcctgattactttatcattattaacaatggccaggacttaacactagagttgacattgttgagatttgcccctttgtttcatgaagaattaatactgagcaagaagaattatggatcagttcgtagagtatacatcaagtgcgaccaagatcagacaataaaagaggatctggcaaggctgatgatcaacgataatccaccagatgaagtcaaagtgattaatggctctgatcatatggtcatgttctccagaccgctggagctgttctccagcctctaccagattgctcaaaattattcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

143

Amino Acids

16.15

Weight (kDa)

5.22

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 49
AccI GTMKAC 1 cut(s) 258
AciI CCGC 3 cut(s) 17, 107, 383
AclWI GGATC 2 cut(s) 250, 303
AcoI YGGCCR 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 49
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 2 cut(s) 48, 391
AluI AGCT 2 cut(s) 48, 391
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 2 cut(s) 250, 303
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 101, 104
AseI ATTAAT 2 cut(s) 218, 348
BalI TGGCCA 1 cut(s) 159
BarI GAAGNNNNNNTAC 2 cut(s) 204, 236
BbvI GCAGC 2 cut(s) 88, 91
BciT130I CCWGG 1 cut(s) 161
BclI TGATCA 2 cut(s) 312, 358
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 1 cut(s) 173
BisI GCNGC 2 cut(s) 102, 105
BlsI GCNGC 2 cut(s) 103, 106
Bme1390I CCNGG 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 161
BplI GAGNNNNNCTC 2 cut(s) 380, 412
BpmI CTGGAG 3 cut(s) 361, 382, 407
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 88, 91
BshFI GGCC 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 74
BsnI GGCC 1 cut(s) 159
Bso31I GGTCTC 1 cut(s) 74
Bsp143I GATC 5 cut(s) 242, 277, 295, 312, 358
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 3 cut(s) 17, 107, 383
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 216
BspHI TCATGA 1 cut(s) 208
BspPI GGATC 2 cut(s) 250, 303
BspTNI GGTCTC 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 5 cut(s) 242, 277, 295, 312, 358
BssNAI GTATAC 1 cut(s) 259
BssT1I CCWWGG 1 cut(s) 75
Bst1107I GTATAC 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 224
BstDSI CCRYGG 1 cut(s) 75
BstKTI GATC 5 cut(s) 245, 280, 298, 315, 361
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 5 cut(s) 242, 277, 295, 312, 358
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 88, 91
BstX2I RGATCY 1 cut(s) 295
BstXI CCANNNNNNTGG 1 cut(s) 385
BstYI RGATCY 1 cut(s) 295
BstZ17I GTATAC 1 cut(s) 259
BsuRI GGCC 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
CciI TCATGA 1 cut(s) 208
CviAII CATG 4 cut(s) 76, 127, 209, 370
CviJI RGCY 8 cut(s) 5, 42, 48, 159, 307, 354, 391, 402
CviKI_1 RGCY 8 cut(s) 5, 42, 48, 159, 307, 354, 391, 402
DdeI CTNAG 1 cut(s) 224
DpnI GATC 5 cut(s) 244, 279, 297, 314, 360
DpnII GATC 5 cut(s) 242, 277, 295, 312, 358
EaeI YGGCCR 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 4 cut(s) 79, 130, 212, 373
FatI CATG 4 cut(s) 75, 126, 208, 369
FauNDI CATATG 1 cut(s) 363
FbaI TGATCA 2 cut(s) 312, 358
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 102, 105
Fsp4HI GCNGC 2 cut(s) 102, 105
FspBI CTAG 1 cut(s) 173
GluI GCNGC 2 cut(s) 102, 105
GsuI CTGGAG 3 cut(s) 361, 382, 407
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 4 cut(s) 79, 130, 212, 373
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 1 cut(s) 57
Hpy166II GTNNAC 2 cut(s) 180, 259
Hpy188I TCNGA 2 cut(s) 282, 358
Hpy188III TCNNGA 2 cut(s) 209, 378
Hpy8I GTNNAC 2 cut(s) 180, 259
HpyAV CCTTC 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 224
Hsp92II CATG 4 cut(s) 79, 130, 212, 373
Ksp22I TGATCA 2 cut(s) 312, 358
Kzo9I GATC 5 cut(s) 242, 277, 295, 312, 358
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 9 cut(s) 144, 146, 173, 284, 342, 371, 391, 412, 422
Lsp1109I GCAGC 2 cut(s) 88, 91
MaeI CTAG 1 cut(s) 173
MalI GATC 5 cut(s) 244, 279, 297, 314, 360
MboI GATC 5 cut(s) 242, 277, 295, 312, 358
MboII GAAGA 2 cut(s) 224, 244
MflI RGATCY 1 cut(s) 295
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 4 cut(s) 96, 215, 235, 421
MluNI TGGCCA 1 cut(s) 159
MnlI CCTC 3 cut(s) 99, 286, 413
Mox20I TGGCCA 1 cut(s) 159
MscI TGGCCA 1 cut(s) 159
MseI TTAA 5 cut(s) 150, 167, 218, 348, 430
Msp20I TGGCCA 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 385
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 113
NcoI CCATGG 1 cut(s) 75
NdeI CATATG 1 cut(s) 363
NdeII GATC 5 cut(s) 242, 277, 295, 312, 358
NlaIII CATG 4 cut(s) 79, 130, 212, 373
NspI RCATGY 1 cut(s) 130
PagI TCATGA 1 cut(s) 208
PfeI GAWTC 1 cut(s) 57
PflMI CCANNNNNTGG 1 cut(s) 49
PkrI GCNGC 2 cut(s) 103, 106
PshBI ATTAAT 2 cut(s) 218, 348
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PsuI RGATCY 1 cut(s) 295
SaqAI TTAA 5 cut(s) 150, 167, 218, 348, 430
SatI GCNGC 2 cut(s) 102, 105
Sau3AI GATC 5 cut(s) 242, 277, 295, 312, 358
ScrFI CCNGG 1 cut(s) 161
SetI ASST 3 cut(s) 50, 86, 393
Sse9I AATT 4 cut(s) 96, 215, 235, 421
SsiI CCGC 3 cut(s) 17, 107, 383
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 75
TasI AATT 4 cut(s) 96, 215, 235, 421
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 5 cut(s) 150, 167, 218, 348, 430
Tru9I TTAA 5 cut(s) 150, 167, 218, 348, 430
TscAI CASTG 1 cut(s) 124
TseI GCWGC 2 cut(s) 101, 104
TspDTI ATGAA 3 cut(s) 197, 225, 348
TspRI CASTG 1 cut(s) 124
Van91I CCANNNNNTGG 1 cut(s) 49
VspI ATTAAT 2 cut(s) 218, 348
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.