Rh2DG172300

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000171
Physical Location & Seq
Forward (+)
14997292 .. 15006276
8985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG172300.1

Sequence Viewer

Length: 780 bp
ATGCTTGGCTGCTACATCTCAGACTACAGAAAGCATTTTGTGCTGGTTCATGGAGCTGGTCACGGAGCTTGGTGTTGGTATAAGCTGGCAACTCTATTGAACTCCACAGGTCACAATGTTACAACTCTAGACCTTGCAGCATCCGGTATCAACCCGATCCAGGTACAGCAAGTTCATTCGTTCTCAGACTACGTTGAGCCATTGATCAAATTTCTGGGGTCTCTGTTACCAAAAGAGAGGGTTATCCTGGTTGGCCACAGCATGGGTGGGGCGGTGATATCAATTGCCATGGAGAGGTTCCCTGAGAAAATTGCTGCCGTTGTTTATGCCACTGCTTTTATGCCTGGTCCTGCTCTGAGTTACTTGACTATTTTTGAGAAGATTCAGGAAACATTGGTGTCAGCTGACGTTCAGTATAGATATGATCAGGGGGCCAACAAACCTCCAACCTCGCTACTCATTGGACCAAAACTATTGTCTTCGAGATTGTACCAGCTATCGCCACCAGAGGATCTAGAACTAGCATTGTCATTGGTGAGATTTTCCCCTCTATTTATTGAAGAAATAAAACTCACTGAGGAGAAGTACGGATTGGTTCCAAGAGTTTTCATCGTGTGTGACCAAGACCTTTCAATAGAGGAGGATCTGCAAACGTGGATGATCAGGAAGAATCCCCCAAATGAAGTGAAGGTGATAAATGGTTCCGATCACATGGTCATGTTCTCTAGACCATTGGAGCTGTTCTCCAACCTCCTGAACGTTGCTGAGAAATATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

259

Amino Acids

29.02

Weight (kDa)

5.81

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 10 - 119 6.9e-14 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 12 - 244 2e-22 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 13 - 248 5.6e-24 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 262
AciI CCGC 1 cut(s) 272
AclI AACGTT 1 cut(s) 759
AclWI GGATC 3 cut(s) 151, 519, 651
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 209
AfaI GTAC 3 cut(s) 165, 491, 587
AfiI CCNNNNNNNGG 3 cut(s) 160, 262, 294
AgsI TTSAA 3 cut(s) 100, 560, 633
AjnI CCWGG 3 cut(s) 159, 246, 343
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AluBI AGCT 6 cut(s) 56, 68, 85, 404, 496, 739
AluI AGCT 6 cut(s) 56, 68, 85, 404, 496, 739
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 3 cut(s) 151, 519, 651
AoxI GGCC 2 cut(s) 253, 432
ApeKI GCWGC 3 cut(s) 9, 137, 314
ApoI RAATTY 1 cut(s) 209
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
AspS9I GGNCC 3 cut(s) 347, 432, 464
AsuHPI GGTGA 3 cut(s) 286, 547, 703
AvaII GGWCC 2 cut(s) 347, 464
BalI TGGCCA 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 471
BbvI GCAGC 2 cut(s) 149, 301
BceAI ACGGC 1 cut(s) 302
BciT130I CCWGG 3 cut(s) 161, 248, 345
BclI TGATCA 3 cut(s) 204, 424, 660
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 4 cut(s) 128, 515, 521, 726
BfmI CTRYAG 1 cut(s) 25
BisI GCNGC 3 cut(s) 10, 138, 315
BlsI GCNGC 3 cut(s) 11, 139, 316
Bme1390I CCNGG 3 cut(s) 161, 248, 345
Bme18I GGWCC 2 cut(s) 347, 464
BmgT120I GGNCC 3 cut(s) 347, 432, 464
BmiI GGNNCC 4 cut(s) 299, 433, 597, 703
BmrFI CCNGG 3 cut(s) 161, 248, 345
BmsI GCATC 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 471
BplI GAGNNNNNCTC 2 cut(s) 728, 760
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 262, 294
BseBI CCWGG 3 cut(s) 161, 248, 345
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 2 cut(s) 140, 663
BseLI CCNNNNNNNGG 3 cut(s) 160, 262, 294
BseMII CTCAG 6 cut(s) 33, 198, 294, 347, 567, 756
BseRI GAGGAG 2 cut(s) 593, 653
BseXI GCAGC 2 cut(s) 149, 301
BshFI GGCC 2 cut(s) 255, 434
BsiSI CCGG 1 cut(s) 144
BslI CCNNNNNNNGG 3 cut(s) 160, 262, 294
BsmAI GTCTC 1 cut(s) 225
BsnI GGCC 2 cut(s) 255, 434
Bso31I GGTCTC 1 cut(s) 225
Bsp143I GATC 7 cut(s) 156, 204, 424, 511, 643, 660, 706
Bsp19I CCATGG 1 cut(s) 288
BspACI CCGC 1 cut(s) 272
BspANI GGCC 2 cut(s) 255, 434
BspCNI CTCAG 6 cut(s) 32, 197, 295, 348, 568, 757
BspLI GGNNCC 4 cut(s) 299, 433, 597, 703
BspPI GGATC 3 cut(s) 151, 519, 651
BspTNI GGTCTC 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 7 cut(s) 156, 204, 424, 511, 643, 660, 706
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 3 cut(s) 161, 248, 345
BstAPI GCANNNNNTGC 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 6 cut(s) 19, 184, 303, 356, 576, 765
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 2 cut(s) 140, 663
BstKTI GATC 7 cut(s) 159, 207, 427, 514, 646, 663, 709
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 7 cut(s) 156, 204, 424, 511, 643, 660, 706
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 3 cut(s) 161, 248, 345
BstSCI CCNGG 3 cut(s) 159, 246, 343
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 149, 301
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 2 cut(s) 511, 643
BstYI RGATCY 2 cut(s) 511, 643
BsuRI GGCC 2 cut(s) 255, 434
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 2 cut(s) 140, 663
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 2 cut(s) 330, 573
Cac8I GCNNGC 1 cut(s) 87
Cfr13I GGNCC 3 cut(s) 347, 432, 464
Csp6I GTAC 3 cut(s) 164, 490, 586
CviAII CATG 5 cut(s) 50, 262, 289, 712, 718
CviQI GTAC 3 cut(s) 164, 490, 586
DdeI CTNAG 6 cut(s) 19, 184, 303, 356, 576, 765
DpnI GATC 7 cut(s) 158, 206, 426, 513, 645, 662, 708
DpnII GATC 7 cut(s) 156, 204, 424, 511, 643, 660, 706
EaeI YGGCCR 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 225
Eco32I GATATC 1 cut(s) 279
Eco47I GGWCC 2 cut(s) 347, 464
EcoRII CCWGG 3 cut(s) 159, 246, 343
EcoRV GATATC 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 5 cut(s) 53, 265, 292, 715, 721
FatI CATG 5 cut(s) 49, 261, 288, 711, 717
FbaI TGATCA 3 cut(s) 204, 424, 660
Fnu4HI GCNGC 3 cut(s) 10, 138, 315
FokI GGATG 2 cut(s) 127, 670
Fsp4HI GCNGC 3 cut(s) 10, 138, 315
FspBI CTAG 4 cut(s) 128, 515, 521, 726
GluI GCNGC 3 cut(s) 10, 138, 315
HaeIII GGCC 2 cut(s) 255, 434
HapII CCGG 1 cut(s) 144
Hin1II CATG 5 cut(s) 53, 265, 292, 715, 721
HinfI GANTC 2 cut(s) 382, 670
HpaII CCGG 1 cut(s) 144
HphI GGTGA 3 cut(s) 286, 547, 703
Hpy188I TCNGA 4 cut(s) 22, 187, 357, 706
Hpy188III TCNNGA 7 cut(s) 128, 386, 483, 515, 664, 726, 754
HpyAV CCTTC 1 cut(s) 682
HpyCH4IV ACGT 4 cut(s) 192, 408, 653, 759
HpyCH4V TGCA 2 cut(s) 137, 649
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 6 cut(s) 19, 184, 303, 356, 576, 765
HpySE526I ACGT 4 cut(s) 192, 408, 653, 759
Hsp92II CATG 5 cut(s) 53, 265, 292, 715, 721
Ksp22I TGATCA 3 cut(s) 204, 424, 660
Kzo9I GATC 7 cut(s) 156, 204, 424, 511, 643, 660, 706
LmnI GCTCC 3 cut(s) 53, 65, 736
Lsp1109I GCAGC 2 cut(s) 149, 301
LweI GCATC 1 cut(s) 149
MaeI CTAG 4 cut(s) 128, 515, 521, 726
MaeII ACGT 4 cut(s) 192, 408, 653, 759
MaeIII GTNAC 6 cut(s) 59, 110, 118, 225, 359, 617
MalI GATC 7 cut(s) 158, 206, 426, 513, 645, 662, 708
MboI GATC 7 cut(s) 156, 204, 424, 511, 643, 660, 706
MboII GAAGA 4 cut(s) 391, 471, 572, 679
MfeI CAATTG 1 cut(s) 282
MflI RGATCY 2 cut(s) 511, 643
MlsI TGGCCA 1 cut(s) 255
MluCI AATT 3 cut(s) 209, 282, 309
MluNI TGGCCA 1 cut(s) 255
MmeI TCCRAC 2 cut(s) 470, 771
Mox20I TGGCCA 1 cut(s) 255
MscI TGGCCA 1 cut(s) 255
MseI TTAA 1 cut(s) 778
MslI CAYNNNNRTG 1 cut(s) 716
Msp20I TGGCCA 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 3 cut(s) 161, 248, 345
MunI CAATTG 1 cut(s) 282
MvaI CCWGG 3 cut(s) 161, 248, 345
MwoI GCNNNNNNNGC 1 cut(s) 40
NcoI CCATGG 1 cut(s) 288
NdeII GATC 7 cut(s) 156, 204, 424, 511, 643, 660, 706
NlaIII CATG 5 cut(s) 53, 265, 292, 715, 721
NlaIV GGNNCC 4 cut(s) 299, 433, 597, 703
NmuCI GTSAC 3 cut(s) 59, 110, 617
PfeI GAWTC 2 cut(s) 382, 670
PflMI CCANNNNNTGG 1 cut(s) 262
PkrI GCNGC 3 cut(s) 11, 139, 316
Psp1406I AACGTT 1 cut(s) 759
Psp6I CCWGG 3 cut(s) 159, 246, 343
PspGI CCWGG 3 cut(s) 159, 246, 343
PspN4I GGNNCC 4 cut(s) 299, 433, 597, 703
PspPI GGNCC 3 cut(s) 347, 432, 464
PsrI GAACNNNNNNTAC 2 cut(s) 156, 188
PsuI RGATCY 2 cut(s) 511, 643
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 3 cut(s) 165, 491, 587
RsaNI GTAC 3 cut(s) 164, 490, 586
RseI CAYNNNNRTG 1 cut(s) 716
SaqAI TTAA 1 cut(s) 778
SatI GCNGC 3 cut(s) 10, 138, 315
Sau3AI GATC 7 cut(s) 156, 204, 424, 511, 643, 660, 706
Sau96I GGNCC 3 cut(s) 347, 432, 464
ScrFI CCNGG 3 cut(s) 161, 248, 345
SfaNI GCATC 1 cut(s) 149
SfcI CTRYAG 1 cut(s) 25
SinI GGWCC 2 cut(s) 347, 464
SmiMI CAYNNNNRTG 1 cut(s) 716
Sse9I AATT 3 cut(s) 209, 282, 309
SsiI CCGC 1 cut(s) 272
SspI AATATT 1 cut(s) 773
SspMI CTAG 4 cut(s) 128, 515, 521, 726
StyD4I CCNGG 3 cut(s) 159, 246, 343
StyI CCWWGG 1 cut(s) 288
TaiI ACGT 4 cut(s) 195, 411, 656, 762
TaqI TCGA 1 cut(s) 482
TasI AATT 3 cut(s) 209, 282, 309
TfiI GAWTC 2 cut(s) 382, 670
Tru1I TTAA 1 cut(s) 778
Tru9I TTAA 1 cut(s) 778
TscAI CASTG 2 cut(s) 337, 580
TseFI GTSAC 3 cut(s) 59, 110, 617
TseI GCWGC 3 cut(s) 9, 137, 314
Tsp45I GTSAC 3 cut(s) 59, 110, 617
TspDTI ATGAA 4 cut(s) 38, 164, 598, 696
TspGWI ACGGA 2 cut(s) 78, 603
TspRI CASTG 2 cut(s) 337, 580
Van91I CCANNNNNTGG 1 cut(s) 262
VpaK11BI GGWCC 2 cut(s) 347, 464
XapI RAATTY 1 cut(s) 209
XbaI TCTAGA 3 cut(s) 127, 514, 725
XcmI CCANNNNNNNNNTGG 1 cut(s) 263
XspI CTAG 4 cut(s) 128, 515, 521, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.