pycom02g12870

Salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000171
Physical Location & Seq
Forward (+)
9452283 .. 9453842
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g12870.1

Sequence Viewer

Length: 870 bp
ATGGAGAACATGACAGAGAAGCTCCTTGCGTTTTTCCTTCTATTTATTTGCTTAGCAAAAGGTAGTACCTCAGCCCCATCCCCACCCTCCAACATACACAACCAAACTCAAAGTCCAAAACATTTTGTGTTGATACATGGAGCTTGTCATGGAGCATGGAGCTGGTATAAGGTGGCGACTCTTCTGAAGAACTCGGGTCACAATGTCACGGCTCTAGACTTGGGAGCATCCGGGATCAACCCGATCCAGGTACAGCAACTCCCTTCGTTATCGGAATACGTCGAGCCCTTGACAAAGCTCATGGTGTCTCTACCACCAAATGAAAAGGTTATCCTTGTGGCTCACAGCTTCGGTGGTGCCGTCATATCTATCTTCATGGAGAGGTTCCCTCGTAAAATTGCTGCTGCAGTATATGTCACGGGGGTCATGTCCGGTCCTACTCTCAATTTCTCAACTATAAATCAAGAGATTAGGAAAAGATTGGATTATCTGGACTCTCAATTCAGATATGATAATGGGACCAACAACCCTGCAACCTCCTTTCTCTTTGGGCCTAAGGTCATGGCGACAAGCTTGTACCAGCTCTCACCACCACAGGATTTAACCCTAGCGTTATCGTTGGTGAGATTTATTCCTCGCTACAATTACGATGTAATAAAGCTCACGGAAGAGAAATATAGAGCAGTTCCTAGAGTATTCATTGTGTCCGGACAAGACCATGCGATAGTATTGGATGTGCAAAATTACATGATAAAAAATAATCCGCCAAATGAAGTGAAGGTGATAAACGGTTCTGATCACATGGTTATGCTCTCAAAACCCGTGGAGTTGTTCTTCCATCTCCAAGATATTGCTGAGAAATATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

290

Amino Acids

32.28

Weight (kDa)

8.72

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 41 - 274 3.7e-18 alpha/beta hydrolase fold
Hydrolase_4 PF12146 41 - 170 2.9e-10 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 42 - 278 9.1e-20 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 356
AccIII TCCGGA 1 cut(s) 707
AciI CCGC 1 cut(s) 764
AclWI GGATC 2 cut(s) 238, 242
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 3 cut(s) 67, 252, 578
AfiI CCNNNNNNNGG 1 cut(s) 247
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 8 cut(s) 22, 143, 162, 298, 348, 573, 583, 661
AluI AGCT 8 cut(s) 22, 143, 162, 298, 348, 573, 583, 661
Alw26I GTCTC 1 cut(s) 312
AlwI GGATC 2 cut(s) 238, 242
Ama87I CYCGRG 1 cut(s) 193
Aor13HI TCCGGA 1 cut(s) 707
AoxI GGCC 1 cut(s) 551
ApeKI GCWGC 2 cut(s) 401, 404
ArsI GACNNNNNNTTYG 2 cut(s) 97, 129
AspS9I GGNCC 3 cut(s) 434, 519, 551
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 3 cut(s) 579, 634, 793
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 2 cut(s) 434, 519
AxyI CCTNAGG 1 cut(s) 555
BanI GGYRCC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 388, 391
BccI CCATC 2 cut(s) 85, 846
BceAI ACGGC 2 cut(s) 225, 344
BciT130I CCWGG 1 cut(s) 248
BclI TGATCA 1 cut(s) 796
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 3 cut(s) 215, 608, 690
BfmI CTRYAG 1 cut(s) 405
BisI GCNGC 2 cut(s) 402, 405
BlpI GCTNAGC 1 cut(s) 52
BlsI GCNGC 2 cut(s) 403, 406
Bme1390I CCNGG 2 cut(s) 232, 248
Bme18I GGWCC 2 cut(s) 434, 519
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 3 cut(s) 434, 519, 551
BmiI GGNNCC 3 cut(s) 358, 386, 520
BmrFI CCNGG 2 cut(s) 232, 248
BmsI GCATC 1 cut(s) 236
BplI GAGNNNNNCTC 2 cut(s) 373, 405
Bpu10I CCTNAGC 1 cut(s) 70
Bpu1102I GCTNAGC 1 cut(s) 52
BpuMI CCSGG 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 822
BsaWI WCCGGW 2 cut(s) 431, 707
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse21I CCTNAGG 1 cut(s) 555
BseAI TCCGGA 1 cut(s) 707
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 822
BseGI GGATG 3 cut(s) 77, 227, 739
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMII CTCAG 2 cut(s) 84, 846
BseXI GCAGC 2 cut(s) 388, 391
BshFI GGCC 1 cut(s) 553
BshNI GGYRCC 1 cut(s) 356
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 3 cut(s) 231, 432, 708
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 532
BsnI GGCC 1 cut(s) 553
BsoBI CYCGRG 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 288
Bsp13I TCCGGA 1 cut(s) 707
Bsp143I GATC 3 cut(s) 234, 243, 796
Bsp1720I GCTNAGC 1 cut(s) 52
BspACI CCGC 1 cut(s) 764
BspANI GGCC 1 cut(s) 553
BspCNI CTCAG 2 cut(s) 83, 847
BspEI TCCGGA 1 cut(s) 707
BspLI GGNNCC 3 cut(s) 358, 386, 520
BspMAI CTGCAG 1 cut(s) 409
BspPI GGATC 2 cut(s) 238, 242
BspT107I GGYRCC 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 822
BssMI GATC 3 cut(s) 234, 243, 796
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 791
Bst6I CTCTTC 2 cut(s) 186, 663
BstDEI CTNAG 4 cut(s) 52, 70, 555, 855
BstDSI CCRYGG 1 cut(s) 822
BstF5I GGATG 3 cut(s) 77, 227, 739
BstKTI GATC 3 cut(s) 237, 246, 799
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 3 cut(s) 234, 243, 796
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 2 cut(s) 230, 246
BstSFI CTRYAG 1 cut(s) 405
BstV1I GCAGC 2 cut(s) 388, 391
Bsu36I CCTNAGG 1 cut(s) 555
BsuRI GGCC 1 cut(s) 553
BtgI CCRYGG 1 cut(s) 822
BtsCI GGATG 3 cut(s) 77, 227, 739
Cfr13I GGNCC 3 cut(s) 434, 519, 551
Csp6I GTAC 3 cut(s) 66, 251, 577
CspCI CAANNNNNGTGG 2 cut(s) 804, 839
CviQI GTAC 3 cut(s) 66, 251, 577
DdeI CTNAG 4 cut(s) 52, 70, 555, 855
DpnI GATC 3 cut(s) 236, 245, 798
DpnII GATC 3 cut(s) 234, 243, 796
Eam1104I CTCTTC 2 cut(s) 186, 663
EarI CTCTTC 2 cut(s) 186, 663
EciI GGCGGA 1 cut(s) 753
Eco24I GRGCYC 1 cut(s) 288
Eco47I GGWCC 2 cut(s) 434, 519
Eco57I CTGAAG 1 cut(s) 206
Eco81I CCTNAGG 1 cut(s) 555
Eco88I CYCGRG 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 288
FaqI GGGAC 1 cut(s) 532
FbaI TGATCA 1 cut(s) 796
Fnu4HI GCNGC 2 cut(s) 402, 405
FokI GGATG 3 cut(s) 64, 214, 746
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 2 cut(s) 402, 405
FspBI CTAG 3 cut(s) 215, 608, 690
GluI GCNGC 2 cut(s) 402, 405
HaeIII GGCC 1 cut(s) 553
HapII CCGG 3 cut(s) 231, 432, 708
HindIII AAGCTT 1 cut(s) 571
HinfI GANTC 2 cut(s) 178, 494
HpaII CCGG 3 cut(s) 231, 432, 708
HphI GGTGA 3 cut(s) 579, 634, 793
Hpy188I TCNGA 4 cut(s) 186, 274, 506, 796
Hpy188III TCNNGA 4 cut(s) 215, 464, 491, 708
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 3 cut(s) 47, 273, 772
HpyCH4III ACNGT 1 cut(s) 791
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 3 cut(s) 407, 533, 739
HpyF3I CTNAG 4 cut(s) 52, 70, 555, 855
HpySE526I ACGT 1 cut(s) 279
Kpn2I TCCGGA 1 cut(s) 707
Ksp22I TGATCA 1 cut(s) 796
Kzo9I GATC 3 cut(s) 234, 243, 796
LmnI GCTCC 5 cut(s) 27, 140, 152, 159, 224
Lsp1109I GCAGC 2 cut(s) 388, 391
LweI GCATC 1 cut(s) 236
MaeI CTAG 3 cut(s) 215, 608, 690
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 3 cut(s) 197, 205, 415
MalI GATC 3 cut(s) 236, 245, 798
MboI GATC 3 cut(s) 234, 243, 796
MboII GAAGA 5 cut(s) 173, 199, 364, 680, 826
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 5 cut(s) 396, 445, 500, 643, 742
MlyI GAGTC 2 cut(s) 172, 488
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 6 cut(s) 79, 97, 375, 399, 547, 645
MroI TCCGGA 1 cut(s) 707
MseI TTAA 1 cut(s) 602
MslI CAYNNNNRTG 1 cut(s) 806
MspI CCGG 3 cut(s) 231, 432, 708
MspR9I CCNGG 2 cut(s) 232, 248
MvaI CCWGG 1 cut(s) 248
NciI CCSGG 1 cut(s) 232
NdeII GATC 3 cut(s) 234, 243, 796
NlaIV GGNNCC 3 cut(s) 358, 386, 520
NmuCI GTSAC 3 cut(s) 197, 205, 415
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PfoI TCCNGGA 1 cut(s) 230
PkrI GCNGC 2 cut(s) 403, 406
PleI GAGTC 2 cut(s) 172, 488
PpsI GAGTC 2 cut(s) 172, 488
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 3 cut(s) 358, 386, 520
PspPI GGNCC 3 cut(s) 434, 519, 551
PstI CTGCAG 1 cut(s) 409
RsaI GTAC 3 cut(s) 67, 252, 578
RsaNI GTAC 3 cut(s) 66, 251, 577
RseI CAYNNNNRTG 1 cut(s) 806
SaqAI TTAA 1 cut(s) 602
SatI GCNGC 2 cut(s) 402, 405
Sau3AI GATC 3 cut(s) 234, 243, 796
Sau96I GGNCC 3 cut(s) 434, 519, 551
SchI GAGTC 2 cut(s) 172, 488
ScrFI CCNGG 2 cut(s) 232, 248
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 1 cut(s) 236
SfcI CTRYAG 1 cut(s) 405
SinI GGWCC 2 cut(s) 434, 519
SmiMI CAYNNNNRTG 1 cut(s) 806
Sse9I AATT 5 cut(s) 396, 445, 500, 643, 742
SsiI CCGC 1 cut(s) 764
SspI AATATT 1 cut(s) 863
SspMI CTAG 3 cut(s) 215, 608, 690
StyD4I CCNGG 2 cut(s) 230, 246
TaaI ACNGT 1 cut(s) 791
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 282
TasI AATT 5 cut(s) 396, 445, 500, 643, 742
Tru1I TTAA 1 cut(s) 602
Tru9I TTAA 1 cut(s) 602
TseFI GTSAC 3 cut(s) 197, 205, 415
TseI GCWGC 2 cut(s) 401, 404
Tsp45I GTSAC 3 cut(s) 197, 205, 415
TspDTI ATGAA 5 cut(s) 336, 364, 688, 786, 855
TspGWI ACGGA 1 cut(s) 680
VpaK11BI GGWCC 2 cut(s) 434, 519
XbaI TCTAGA 1 cut(s) 214
XspI CTAG 3 cut(s) 215, 608, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.