Rmu_ssc0000417.1_g000003

Methylketone synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000417.1
OG0000171
Physical Location & Seq
Reverse (-)
23350 .. 24043
694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000417.1_g000003.1.cds

Sequence Viewer

Length: 306 bp
atgtcctcatcgctgtatcagctctcaccaacagaggacttaacattagcgttctcattggtgcgaccttcccctctctttaatgaagaaataaaactcacaaagctgaaatatggaatggttcgtagagtactcatcgcatgtgaccaagaccgtggatataccgagcaagtggtaaggttgatgatcagtcaaaatccgccgaatgaagtgaaagtgatcaatggttcggatcacatagttatggtccctagaccagtagagctgttctcccatctccagaagattgctgagaaatactattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

101

Amino Acids

11.63

Weight (kDa)

7.87

Isoelectric Point (pI)

61.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 200
AclWI GGATC 1 cut(s) 240
AfaI GTAC 1 cut(s) 132
AluBI AGCT 3 cut(s) 22, 106, 265
AluI AGCT 3 cut(s) 22, 106, 265
AlwI GGATC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 18
AvaII GGWCC 1 cut(s) 247
BccI CCATC 1 cut(s) 282
BclI TGATCA 2 cut(s) 186, 219
BfaI CTAG 1 cut(s) 252
BmcAI AGTACT 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 249
BplI GAGNNNNNCTC 2 cut(s) 254, 286
BpmI CTGGAG 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 233
Bsp143I GATC 3 cut(s) 186, 219, 232
BspACI CCGC 1 cut(s) 200
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 1 cut(s) 240
BsrI ACTGG 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 3 cut(s) 186, 219, 232
Bst4CI ACNGT 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 291
BstDSI CCRYGG 1 cut(s) 154
BstKTI GATC 3 cut(s) 189, 222, 235
BstMBI GATC 3 cut(s) 186, 219, 232
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNSI RCATGY 1 cut(s) 144
BstXI CCANNNNNNTGG 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 154
BtgZI GCGATG 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 247
Csp6I GTAC 1 cut(s) 131
CviAII CATG 1 cut(s) 141
CviJI RGCY 3 cut(s) 22, 106, 265
CviKI_1 RGCY 3 cut(s) 22, 106, 265
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 1 cut(s) 291
DpnI GATC 3 cut(s) 188, 221, 234
DpnII GATC 3 cut(s) 186, 219, 232
EciI GGCGGA 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 247
FaeI CATG 1 cut(s) 144
FaiI YATR 5 cut(s) 114, 142, 162, 239, 245
FaqI GGGAC 1 cut(s) 233
FatI CATG 1 cut(s) 140
FbaI TGATCA 2 cut(s) 186, 219
FspBI CTAG 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 263
Hin1II CATG 1 cut(s) 144
HphI GGTGA 1 cut(s) 18
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 280
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 1 cut(s) 144
Ksp22I TGATCA 2 cut(s) 186, 219
Kzo9I GATC 3 cut(s) 186, 219, 232
LpnPI CCDG 2 cut(s) 270, 293
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 143
MalI GATC 3 cut(s) 188, 221, 234
MboI GATC 3 cut(s) 186, 219, 232
MboII GAAGA 2 cut(s) 98, 295
MnlI CCTC 3 cut(s) 16, 28, 84
MseI TTAA 3 cut(s) 41, 81, 304
MslI CAYNNNNRTG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 19
NdeII GATC 3 cut(s) 186, 219, 232
NlaIII CATG 1 cut(s) 144
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 247
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 3 cut(s) 41, 81, 304
Sau3AI GATC 3 cut(s) 186, 219, 232
Sau96I GGNCC 1 cut(s) 247
ScaI AGTACT 1 cut(s) 132
SetI ASST 5 cut(s) 24, 70, 108, 182, 267
SgeI CNNG 8 cut(s) 153, 161, 167, 178, 182, 264, 269, 292
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 242
SsiI CCGC 1 cut(s) 200
SspMI CTAG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 155
TatI WGTACW 1 cut(s) 130
Tru1I TTAA 3 cut(s) 41, 81, 304
Tru9I TTAA 3 cut(s) 41, 81, 304
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 99, 222
VpaK11BI GGWCC 1 cut(s) 247
XceI RCATGY 1 cut(s) 144
XspI CTAG 1 cut(s) 252
ZrmI AGTACT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.