Rmu_sc0001085.1_g000007

Methylketone synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001085.1
OG0000171
Physical Location & Seq
Forward (+)
19380 .. 20738
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001085.1_g000007.1.cds

Sequence Viewer

Length: 867 bp
atggagattaataatatgagggtgaagaagcattttgtgccatttcttgtatttgtttgcttggcaacaacctgtaacaatattgcagaatgccaaaaccacccatttgggaagaagcattttgtgcttgttcacggagctggtcacggagcatggtgttggtacaaggtgacaactctattgaaatctgccggtcacaatgttacagctctagacatggcagcatccggaataaacccgattcaggtgcaagaagtccattcgttctcggattatgctgagccgttgatcaaattcatggcttctctaccaccactacatagggttatcctagttggccacagcatgggtggtgccatcatatctattgccatggagatgttccctcagaggatttcagctgctgtattcgccaccgctgccatgcctgggcctgctctaaattactccactatagttgcaacgatcaacggtggtgcgagtactcttatggactctcagtttatatatgatgatgggccaaacaaccctccgacctctttactatttgggtctaacttcatgtcctcatcgctgtatcagctctcaccaccagaggacttaacattagcgttctcattggtgcgaccttcccctctctttaatgaagaaataaaactcacaaagctgaaatatggaatggttcgtagagtactcatcgcatgtgaccaagaccgtggatataccgagcaagtggtaaggttgatgatcagtcaaaatccgccgaatgaagtgaaagtgatcaatggttcagatcacatagttatggtctctagaccagtagagctgttctcccatctccagaagattgctgagaaatactattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

288

Amino Acids

31.8

Weight (kDa)

7.72

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 353
AccB7I CCANNNNNTGG 1 cut(s) 346
AccIII TCCGGA 1 cut(s) 227
AciI CCGC 2 cut(s) 417, 761
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 293
AfaI GTAC 3 cut(s) 164, 484, 693
AfiI CCNNNNNNNGG 3 cut(s) 244, 346, 429
AgsI TTSAA 1 cut(s) 184
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 6 cut(s) 140, 209, 401, 583, 667, 826
AluI AGCT 6 cut(s) 140, 209, 401, 583, 667, 826
Alw26I GTCTC 1 cut(s) 814
AlwNI CAGNNNCTG 1 cut(s) 404
Aor13HI TCCGGA 1 cut(s) 227
AoxI GGCC 3 cut(s) 337, 431, 518
ApeKI GCWGC 3 cut(s) 221, 401, 419
ApoI RAATTY 1 cut(s) 293
AseI ATTAAT 1 cut(s) 9
AspS9I GGNCC 2 cut(s) 431, 518
AsuHPI GGTGA 3 cut(s) 34, 181, 579
BalI TGGCCA 1 cut(s) 339
BanI GGYRCC 1 cut(s) 353
BbvI GCAGC 3 cut(s) 233, 388, 406
BccI CCATC 3 cut(s) 365, 509, 843
BceAI ACGGC 1 cut(s) 268
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BciT130I CCWGG 1 cut(s) 429
BclI TGATCA 3 cut(s) 288, 747, 780
BcoDI GTCTC 1 cut(s) 814
BfaI CTAG 3 cut(s) 212, 332, 813
BfmI CTRYAG 1 cut(s) 453
BisI GCNGC 3 cut(s) 222, 402, 420
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 3 cut(s) 223, 403, 421
BmcAI AGTACT 2 cut(s) 484, 693
Bme1390I CCNGG 1 cut(s) 429
BmgT120I GGNCC 2 cut(s) 431, 518
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 1 cut(s) 233
BplI GAGNNNNNCTC 2 cut(s) 815, 847
BpmI CTGGAG 1 cut(s) 824
Bpu1102I GCTNAGC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 814
BsaJI CCNNGG 3 cut(s) 372, 428, 715
BsaWI WCCGGW 1 cut(s) 227
Bsc4I CCNNNNNNNGG 3 cut(s) 244, 346, 429
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 818
BseAI TCCGGA 1 cut(s) 227
BseBI CCWGG 1 cut(s) 429
BseDI CCNNGG 3 cut(s) 372, 428, 715
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 3 cut(s) 244, 346, 429
BseMII CTCAG 4 cut(s) 270, 401, 512, 843
BseNI ACTGG 1 cut(s) 818
BseXI GCAGC 3 cut(s) 233, 388, 406
BshFI GGCC 3 cut(s) 339, 433, 520
BshNI GGYRCC 1 cut(s) 353
BsiSI CCGG 2 cut(s) 192, 228
BslI CCNNNNNNNGG 3 cut(s) 244, 346, 429
BsmAI GTCTC 1 cut(s) 814
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 3 cut(s) 339, 433, 520
Bso31I GGTCTC 1 cut(s) 814
Bsp13I TCCGGA 1 cut(s) 227
Bsp143I GATC 5 cut(s) 288, 465, 747, 780, 793
Bsp1720I GCTNAGC 1 cut(s) 279
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 2 cut(s) 417, 761
BspANI GGCC 3 cut(s) 339, 433, 520
BspCNI CTCAG 4 cut(s) 271, 400, 511, 844
BspEI TCCGGA 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 353
BspTNI GGTCTC 1 cut(s) 814
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 1 cut(s) 818
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 3 cut(s) 372, 428, 715
BssMI GATC 5 cut(s) 288, 465, 747, 780, 793
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 2 cut(s) 473, 716
BstAPI GCANNNNNTGC 2 cut(s) 37, 124
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 4 cut(s) 279, 387, 498, 852
BstDSI CCRYGG 2 cut(s) 372, 715
BstF5I GGATG 1 cut(s) 224
BstKTI GATC 5 cut(s) 291, 468, 750, 783, 796
BstMAI GTCTC 1 cut(s) 814
BstMBI GATC 5 cut(s) 288, 465, 747, 780, 793
BstMWI GCNNNNNNNGC 5 cut(s) 37, 124, 410, 419, 580
BstNI CCWGG 1 cut(s) 429
BstNSI RCATGY 1 cut(s) 705
BstSCI CCNGG 1 cut(s) 427
BstSFI CTRYAG 1 cut(s) 453
BstV1I GCAGC 3 cut(s) 233, 388, 406
BstXI CCANNNNNNTGG 2 cut(s) 107, 716
BsuRI GGCC 3 cut(s) 339, 433, 520
BtgI CCRYGG 2 cut(s) 372, 715
BtgZI GCGATG 2 cut(s) 555, 682
BtsCI GGATG 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 435
CaiI CAGNNNCTG 1 cut(s) 404
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 431, 518
Csp6I GTAC 3 cut(s) 163, 483, 692
CspCI CAANNNNNGTGG 2 cut(s) 439, 474
CviAII CATG 8 cut(s) 153, 217, 298, 346, 373, 424, 562, 702
CviQI GTAC 3 cut(s) 163, 483, 692
DdeI CTNAG 4 cut(s) 279, 387, 498, 852
DpnI GATC 5 cut(s) 290, 467, 749, 782, 795
DpnII GATC 5 cut(s) 288, 465, 747, 780, 793
EaeI YGGCCR 1 cut(s) 337
EciI GGCGGA 1 cut(s) 750
Eco130I CCWWGG 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 814
EcoRII CCWGG 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 8 cut(s) 156, 220, 301, 349, 376, 427, 565, 705
FatI CATG 8 cut(s) 152, 216, 297, 345, 372, 423, 561, 701
FbaI TGATCA 3 cut(s) 288, 747, 780
Fnu4HI GCNGC 3 cut(s) 222, 402, 420
FokI GGATG 1 cut(s) 211
Fsp4HI GCNGC 3 cut(s) 222, 402, 420
FspBI CTAG 3 cut(s) 212, 332, 813
GluI GCNGC 3 cut(s) 222, 402, 420
GsuI CTGGAG 1 cut(s) 824
HaeIII GGCC 3 cut(s) 339, 433, 520
HapII CCGG 2 cut(s) 192, 228
Hin1II CATG 8 cut(s) 156, 220, 301, 349, 376, 427, 565, 705
HinfI GANTC 2 cut(s) 241, 494
HpaII CCGG 2 cut(s) 192, 228
HphI GGTGA 3 cut(s) 34, 181, 579
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 4 cut(s) 271, 390, 534, 793
Hpy188III TCNNGA 4 cut(s) 212, 228, 813, 841
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 639
HpyCH4III ACNGT 2 cut(s) 473, 716
HpyCH4V TGCA 3 cut(s) 86, 250, 461
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 124, 410, 419, 580
HpyF3I CTNAG 4 cut(s) 279, 387, 498, 852
Hsp92II CATG 8 cut(s) 156, 220, 301, 349, 376, 427, 565, 705
Kpn2I TCCGGA 1 cut(s) 227
Ksp22I TGATCA 3 cut(s) 288, 747, 780
Kzo9I GATC 5 cut(s) 288, 465, 747, 780, 793
LmnI GCTCC 2 cut(s) 137, 149
Lsp1109I GCAGC 3 cut(s) 233, 388, 406
LweI GCATC 1 cut(s) 233
MaeI CTAG 3 cut(s) 212, 332, 813
MaeIII GTNAC 6 cut(s) 74, 143, 169, 194, 202, 704
MalI GATC 5 cut(s) 290, 467, 749, 782, 795
MboI GATC 5 cut(s) 288, 465, 747, 780, 793
MboII GAAGA 4 cut(s) 37, 124, 659, 856
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 2 cut(s) 293, 442
MluNI TGGCCA 1 cut(s) 339
MlyI GAGTC 1 cut(s) 488
MmeI TCCRAC 1 cut(s) 557
MnlI CCTC 8 cut(s) 12, 384, 396, 540, 547, 577, 589, 645
Mox20I TGGCCA 1 cut(s) 339
MroI TCCGGA 1 cut(s) 227
MscI TGGCCA 1 cut(s) 339
MseI TTAA 4 cut(s) 9, 602, 642, 865
MslI CAYNNNNRTG 2 cut(s) 377, 803
Msp20I TGGCCA 1 cut(s) 339
MspA1I CMGCKG 2 cut(s) 401, 419
MspI CCGG 2 cut(s) 192, 228
MspR9I CCNGG 1 cut(s) 429
Mva1269I GAATGC 1 cut(s) 95
MvaI CCWGG 1 cut(s) 429
MwoI GCNNNNNNNGC 5 cut(s) 37, 124, 410, 419, 580
NcoI CCATGG 1 cut(s) 372
NdeII GATC 5 cut(s) 288, 465, 747, 780, 793
NlaIII CATG 8 cut(s) 156, 220, 301, 349, 376, 427, 565, 705
NlaIV GGNNCC 1 cut(s) 355
NmuCI GTSAC 4 cut(s) 143, 169, 194, 704
NspI RCATGY 1 cut(s) 705
PctI GAATGC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 241
PflMI CCANNNNNTGG 1 cut(s) 346
PkrI GCNGC 3 cut(s) 223, 403, 421
PleI GAGTC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 488
PshBI ATTAAT 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 2 cut(s) 431, 518
PstNI CAGNNNCTG 1 cut(s) 404
PvuII CAGCTG 1 cut(s) 401
RsaI GTAC 3 cut(s) 164, 484, 693
RsaNI GTAC 3 cut(s) 163, 483, 692
RseI CAYNNNNRTG 2 cut(s) 377, 803
SaqAI TTAA 4 cut(s) 9, 602, 642, 865
SatI GCNGC 3 cut(s) 222, 402, 420
Sau3AI GATC 5 cut(s) 288, 465, 747, 780, 793
Sau96I GGNCC 2 cut(s) 431, 518
ScaI AGTACT 2 cut(s) 484, 693
SchI GAGTC 1 cut(s) 488
ScrFI CCNGG 1 cut(s) 429
SfaNI GCATC 1 cut(s) 233
SfcI CTRYAG 1 cut(s) 453
SmiMI CAYNNNNRTG 2 cut(s) 377, 803
Sse9I AATT 2 cut(s) 293, 442
SsiI CCGC 2 cut(s) 417, 761
SspI AATATT 1 cut(s) 82
SspMI CTAG 3 cut(s) 212, 332, 813
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 473, 716
TasI AATT 2 cut(s) 293, 442
TatI WGTACW 2 cut(s) 482, 691
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 4 cut(s) 9, 602, 642, 865
Tru9I TTAA 4 cut(s) 9, 602, 642, 865
TseFI GTSAC 4 cut(s) 143, 169, 194, 704
TseI GCWGC 3 cut(s) 221, 401, 419
Tsp45I GTSAC 4 cut(s) 143, 169, 194, 704
TspDTI ATGAA 4 cut(s) 286, 550, 660, 783
TspGWI ACGGA 2 cut(s) 150, 162
Van91I CCANNNNNTGG 1 cut(s) 346
VspI ATTAAT 1 cut(s) 9
XapI RAATTY 1 cut(s) 293
XbaI TCTAGA 2 cut(s) 211, 812
XceI RCATGY 1 cut(s) 705
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
XspI CTAG 3 cut(s) 212, 332, 813
ZrmI AGTACT 2 cut(s) 484, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.