Rh2AG167400

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000171
Physical Location & Seq
Forward (+)
15763226 .. 15764516
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG167400.1

Sequence Viewer

Length: 543 bp
ATGGTTATCCTGGTTAGCCACAGCTTGGGTGGGATCCCTATATCTATTGCCATGGAGACCTTCCCTCATAAAATTGCTGCTGCGGTTTTTGCCACTGCTGACATGCCTGGTCCGACTCTCAATTACTCAACTATATCTAAAGAGTTTGGCAAATCTAATTATTTTATGGACACTCAATATAGATTTGATGAGGGCCCCGACAAACCTGCAACTTCGTTCCTCCATGGGCCAGAATTCATCTCCTTTTCCTTGTATCAGCTCTCGCCACCAGAGGACTTAACACTAGAGTTGACATTGTTGAGATTTGCCCCTTTGTTTCATGAAGAATTAATACTGAGCAAGAAGAATTATGGATCAGTTCGTAGAGTATACATCAAGTGCGACCAAGATCAGACAATAAAAAAGGATCTGGCAAGGCTGATGATCAACGATAATCCACCAGATGAAGTCAAAGTGATTAATGGCTCTGATCATATGGTCATGTTCTCCAGACCGCTGGAGCTGTTCTCCAGCCTCTACCAGATTGCTCAAAATTATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

180

Amino Acids

20.37

Weight (kDa)

5.49

Isoelectric Point (pI)

29.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_6 PF12697 2 - 169 1.4e-08 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 25
AccI GTMKAC 1 cut(s) 369
AciI CCGC 2 cut(s) 83, 494
AclWI GGATC 4 cut(s) 28, 41, 361, 414
AcsI RAATTY 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 25
AjnI CCWGG 2 cut(s) 9, 106
AluBI AGCT 3 cut(s) 24, 259, 502
AluI AGCT 3 cut(s) 24, 259, 502
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 4 cut(s) 28, 41, 361, 414
AoxI GGCC 2 cut(s) 193, 227
ApaI GGGCCC 1 cut(s) 197
ApeKI GCWGC 2 cut(s) 77, 80
ApoI RAATTY 1 cut(s) 233
AseI ATTAAT 2 cut(s) 329, 459
AspS9I GGNCC 4 cut(s) 110, 193, 194, 227
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 197
BamHI GGATCC 1 cut(s) 33
BanII GRGCYC 1 cut(s) 197
BarI GAAGNNNNNNTAC 2 cut(s) 315, 347
BbvI GCAGC 2 cut(s) 64, 67
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 2 cut(s) 11, 108
BclI TGATCA 2 cut(s) 423, 469
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 1 cut(s) 284
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 2 cut(s) 78, 81
BlsI GCNGC 2 cut(s) 79, 82
Bme1390I CCNGG 2 cut(s) 11, 108
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 4 cut(s) 110, 193, 194, 227
BmiI GGNNCC 3 cut(s) 35, 195, 196
BmrFI CCNGG 2 cut(s) 11, 108
BplI GAGNNNNNCTC 2 cut(s) 491, 523
BpmI CTGGAG 3 cut(s) 472, 493, 518
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 51, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 25
BseBI CCWGG 2 cut(s) 11, 108
BseDI CCNNGG 2 cut(s) 51, 223
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 326
BseSI GKGCMC 1 cut(s) 197
BseXI GCAGC 2 cut(s) 64, 67
BshFI GGCC 2 cut(s) 195, 229
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 50
BsnI GGCC 2 cut(s) 195, 229
Bso31I GGTCTC 1 cut(s) 50
Bsp120I GGGCCC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 6 cut(s) 33, 353, 388, 406, 423, 469
Bsp19I CCATGG 2 cut(s) 51, 223
BspACI CCGC 2 cut(s) 83, 494
BspANI GGCC 2 cut(s) 195, 229
BspCNI CTCAG 1 cut(s) 327
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 3 cut(s) 35, 195, 196
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 4 cut(s) 28, 41, 361, 414
BspTNI GGTCTC 1 cut(s) 50
BssECI CCNNGG 2 cut(s) 51, 223
BssMI GATC 6 cut(s) 33, 353, 388, 406, 423, 469
BssNAI GTATAC 1 cut(s) 370
BssT1I CCWWGG 2 cut(s) 51, 223
Bst1107I GTATAC 1 cut(s) 370
Bst2UI CCWGG 2 cut(s) 11, 108
BstDEI CTNAG 1 cut(s) 335
BstDSI CCRYGG 2 cut(s) 51, 223
BstKTI GATC 6 cut(s) 36, 356, 391, 409, 426, 472
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 6 cut(s) 33, 353, 388, 406, 423, 469
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 2 cut(s) 11, 108
BstNSI RCATGY 1 cut(s) 106
BstSCI CCNGG 2 cut(s) 9, 106
BstSLI GKGCMC 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 64, 67
BstX2I RGATCY 2 cut(s) 33, 406
BstXI CCANNNNNNTGG 1 cut(s) 496
BstYI RGATCY 2 cut(s) 33, 406
BstZ17I GTATAC 1 cut(s) 370
BsuRI GGCC 2 cut(s) 195, 229
BtgI CCRYGG 2 cut(s) 51, 223
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 214
CciI TCATGA 1 cut(s) 319
Cfr13I GGNCC 4 cut(s) 110, 193, 194, 227
CviAII CATG 5 cut(s) 52, 103, 224, 320, 481
CviJI RGCY 9 cut(s) 18, 24, 195, 229, 259, 418, 465, 502, 513
CviKI_1 RGCY 9 cut(s) 18, 24, 195, 229, 259, 418, 465, 502, 513
DdeI CTNAG 1 cut(s) 335
DpnI GATC 6 cut(s) 35, 355, 390, 408, 425, 471
DpnII GATC 6 cut(s) 33, 353, 388, 406, 423, 469
Eco130I CCWWGG 2 cut(s) 51, 223
Eco24I GRGCYC 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 110
EcoO109I RGGNCCY 2 cut(s) 193, 194
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 2 cut(s) 9, 106
EcoT14I CCWWGG 2 cut(s) 51, 223
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 2 cut(s) 51, 223
FaeI CATG 5 cut(s) 55, 106, 227, 323, 484
FatI CATG 5 cut(s) 51, 102, 223, 319, 480
FauNDI CATATG 1 cut(s) 474
FbaI TGATCA 2 cut(s) 423, 469
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 2 cut(s) 78, 81
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 78, 81
FspBI CTAG 1 cut(s) 284
GluI GCNGC 2 cut(s) 78, 81
GsuI CTGGAG 3 cut(s) 472, 493, 518
HaeIII GGCC 2 cut(s) 195, 229
Hin1II CATG 5 cut(s) 55, 106, 227, 323, 484
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HinfI GANTC 1 cut(s) 115
Hpy166II GTNNAC 2 cut(s) 291, 370
Hpy188I TCNGA 3 cut(s) 114, 393, 469
Hpy188III TCNNGA 2 cut(s) 320, 489
Hpy8I GTNNAC 2 cut(s) 291, 370
HpyAV CCTTC 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 335
Hsp92II CATG 5 cut(s) 55, 106, 227, 323, 484
Ksp22I TGATCA 2 cut(s) 423, 469
Kzo9I GATC 6 cut(s) 33, 353, 388, 406, 423, 469
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 2 cut(s) 64, 67
MaeI CTAG 1 cut(s) 284
MalI GATC 6 cut(s) 35, 355, 390, 408, 425, 471
MboI GATC 6 cut(s) 33, 353, 388, 406, 423, 469
MboII GAAGA 2 cut(s) 335, 355
MflI RGATCY 2 cut(s) 33, 406
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 7 cut(s) 72, 121, 157, 233, 326, 346, 532
MlyI GAGTC 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 5 cut(s) 75, 184, 230, 265, 524
MseI TTAA 4 cut(s) 278, 329, 459, 541
MspA1I CMGCKG 1 cut(s) 496
MspR9I CCNGG 2 cut(s) 11, 108
MvaI CCWGG 2 cut(s) 11, 108
MwoI GCNNNNNNNGC 1 cut(s) 89
NcoI CCATGG 2 cut(s) 51, 223
NdeI CATATG 1 cut(s) 474
NdeII GATC 6 cut(s) 33, 353, 388, 406, 423, 469
NlaIII CATG 5 cut(s) 55, 106, 227, 323, 484
NlaIV GGNNCC 3 cut(s) 35, 195, 196
NspI RCATGY 1 cut(s) 106
PagI TCATGA 1 cut(s) 319
PflMI CCANNNNNTGG 1 cut(s) 25
PkrI GCNGC 2 cut(s) 79, 82
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PshBI ATTAAT 2 cut(s) 329, 459
Psp6I CCWGG 2 cut(s) 9, 106
PspGI CCWGG 2 cut(s) 9, 106
PspN4I GGNNCC 3 cut(s) 35, 195, 196
PspOMI GGGCCC 1 cut(s) 193
PspPI GGNCC 4 cut(s) 110, 193, 194, 227
PsuI RGATCY 2 cut(s) 33, 406
SaqAI TTAA 4 cut(s) 278, 329, 459, 541
SatI GCNGC 2 cut(s) 78, 81
Sau3AI GATC 6 cut(s) 33, 353, 388, 406, 423, 469
Sau96I GGNCC 4 cut(s) 110, 193, 194, 227
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 2 cut(s) 11, 108
SduI GDGCHC 1 cut(s) 197
SetI ASST 5 cut(s) 26, 62, 208, 261, 504
SinI GGWCC 1 cut(s) 110
Sse9I AATT 7 cut(s) 72, 121, 157, 233, 326, 346, 532
SsiI CCGC 2 cut(s) 83, 494
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 2 cut(s) 9, 106
StyI CCWWGG 2 cut(s) 51, 223
TasI AATT 7 cut(s) 72, 121, 157, 233, 326, 346, 532
Tru1I TTAA 4 cut(s) 278, 329, 459, 541
Tru9I TTAA 4 cut(s) 278, 329, 459, 541
TscAI CASTG 1 cut(s) 100
TseI GCWGC 2 cut(s) 77, 80
TspDTI ATGAA 4 cut(s) 226, 308, 336, 459
TspRI CASTG 1 cut(s) 100
Van91I CCANNNNNTGG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 110
VspI ATTAAT 2 cut(s) 329, 459
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 106
XcmI CCANNNNNNNNNTGG 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 369
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.