Rroxscaffold_4G00320470

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000171
Physical Location & Seq
Reverse (-)
49124833 .. 49141359
16527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00320470.1

Sequence Viewer

Length: 345 bp
ATGGAGAGGTTCCTTCGTAAAATTGCTGCTGCAGTTTTTGCCACTGCTAGCATGCCTGGTCTAAATATTAGTTTGGCCACTATATTTGAAGAGATAAATAGTTCTACACATGCATATGTTTTTGGACTTGGCAGAAATACAGATTTTATGGACACTCAATATAGATTTGATGATGGATCCGACAAACCTGCGACCGCAATATTCTGTGGGCCGAAGTTTTTGGCATCATCATTGTACCAACTCTCGCCACCAGAGATACAAGGTCCAAAAAATAATGTAAAAGGTCCAAAAAATAATGTAAAAGGTAAGTTCACCAATCACATGGCCAATAACTTGACAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

114

Amino Acids

12.52

Weight (kDa)

9.17

Isoelectric Point (pI)

29.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 196
AciI CCGC 1 cut(s) 195
AclWI GGATC 2 cut(s) 171, 184
AcoI YGGCCR 2 cut(s) 75, 324
AfaI GTAC 1 cut(s) 236
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 1 cut(s) 55
AlwI GGATC 2 cut(s) 171, 184
AoxI GGCC 3 cut(s) 75, 209, 324
ApeKI GCWGC 2 cut(s) 26, 29
AspS9I GGNCC 3 cut(s) 209, 263, 284
AsuHPI GGTGA 1 cut(s) 304
AsuNHI GCTAGC 1 cut(s) 47
AvaII GGWCC 2 cut(s) 263, 284
BalI TGGCCA 2 cut(s) 77, 326
BamHI GGATCC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 13, 16
BccI CCATC 1 cut(s) 167
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 1 cut(s) 57
BfaI CTAG 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 30
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 2 cut(s) 27, 30
BlsI GCNGC 2 cut(s) 28, 31
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 2 cut(s) 263, 284
BmgT120I GGNCC 3 cut(s) 209, 263, 284
BmiI GGNNCC 2 cut(s) 11, 178
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 1 cut(s) 233
BmtI GCTAGC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 57
BseXI GCAGC 2 cut(s) 13, 16
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 3 cut(s) 77, 211, 326
BsiEI CGRYCG 1 cut(s) 195
BsnI GGCC 3 cut(s) 77, 211, 326
Bsp143I GATC 1 cut(s) 176
BspACI CCGC 1 cut(s) 195
BspANI GGCC 3 cut(s) 77, 211, 326
BspLI GGNNCC 2 cut(s) 11, 178
BspMAI CTGCAG 1 cut(s) 34
BspMI ACCTGC 1 cut(s) 196
BspOI GCTAGC 1 cut(s) 51
BspPI GGATC 2 cut(s) 171, 184
BssMI GATC 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 49, 53
BstKTI GATC 1 cut(s) 179
BstMBI GATC 1 cut(s) 176
BstMCI CGRYCG 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 2 cut(s) 55, 113
BstSCI CCNGG 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 13, 16
BstX2I RGATCY 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 322
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 3 cut(s) 77, 211, 326
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 49, 53
Cfr13I GGNCC 3 cut(s) 209, 263, 284
Csp6I GTAC 1 cut(s) 235
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 3 cut(s) 52, 110, 322
CviJI RGCY 3 cut(s) 77, 211, 326
CviKI_1 RGCY 3 cut(s) 77, 211, 326
CviQI GTAC 1 cut(s) 235
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
EaeI YGGCCR 2 cut(s) 75, 324
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco47I GGWCC 2 cut(s) 263, 284
EcoRII CCWGG 1 cut(s) 55
EcoT22I ATGCAT 1 cut(s) 115
FaeI CATG 3 cut(s) 55, 113, 325
FaiI YATR 9 cut(s) 53, 83, 111, 115, 117, 149, 162, 323, 343
FatI CATG 3 cut(s) 51, 109, 321
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 27, 30
Fsp4HI GCNGC 2 cut(s) 27, 30
FspBI CTAG 1 cut(s) 48
GluI GCNGC 2 cut(s) 27, 30
HaeIII GGCC 3 cut(s) 77, 211, 326
Hin1II CATG 3 cut(s) 55, 113, 325
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 312
HpyAV CCTTC 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 32, 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
Hsp92II CATG 3 cut(s) 55, 113, 325
Kzo9I GATC 1 cut(s) 176
LpnPI CCDG 4 cut(s) 42, 69, 201, 264
Lsp1109I GCAGC 2 cut(s) 13, 16
LweI GCATC 1 cut(s) 233
MaeI CTAG 1 cut(s) 48
MalI GATC 1 cut(s) 178
MboI GATC 1 cut(s) 176
MboII GAAGA 1 cut(s) 101
MflI RGATCY 1 cut(s) 176
MlsI TGGCCA 2 cut(s) 77, 326
MluCI AATT 1 cut(s) 21
MluNI TGGCCA 2 cut(s) 77, 326
MmeI TCCRAC 1 cut(s) 204
Mox20I TGGCCA 2 cut(s) 77, 326
Mph1103I ATGCAT 1 cut(s) 115
MscI TGGCCA 2 cut(s) 77, 326
MslI CAYNNNNRTG 1 cut(s) 114
Msp20I TGGCCA 2 cut(s) 77, 326
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeI CATATG 1 cut(s) 115
NdeII GATC 1 cut(s) 176
NheI GCTAGC 1 cut(s) 47
NlaIII CATG 3 cut(s) 55, 113, 325
NlaIV GGNNCC 2 cut(s) 11, 178
NsiI ATGCAT 1 cut(s) 115
NspI RCATGY 2 cut(s) 55, 113
PaeI GCATGC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 28, 31
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 11, 178
PspPI GGNCC 3 cut(s) 209, 263, 284
PstI CTGCAG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 176
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 114
SatI GCNGC 2 cut(s) 27, 30
Sau3AI GATC 1 cut(s) 176
Sau96I GGNCC 3 cut(s) 209, 263, 284
ScrFI CCNGG 1 cut(s) 57
SetI ASST 5 cut(s) 11, 190, 265, 286, 307
SfaNI GCATC 1 cut(s) 233
SfcI CTRYAG 1 cut(s) 30
SinI GGWCC 2 cut(s) 263, 284
SmiMI CAYNNNNRTG 1 cut(s) 114
SphI GCATGC 1 cut(s) 55
Sse9I AATT 1 cut(s) 21
SsiI CCGC 1 cut(s) 195
SspI AATATT 2 cut(s) 67, 201
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 55
TasI AATT 1 cut(s) 21
TscAI CASTG 1 cut(s) 49
TseI GCWGC 2 cut(s) 26, 29
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 2 cut(s) 263, 284
XceI RCATGY 2 cut(s) 55, 113
XspI CTAG 1 cut(s) 48
Zsp2I ATGCAT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.