Prupe.7G141100_v2.0.a1

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000171
Physical Location & Seq
Reverse (-)
15646042 .. 15648166
2125 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G141100.1

Sequence Viewer

Length: 876 bp
ATGGAGCACTTGAAAAACAAGTCTTTTCTCTTTTGTCTCTTACTTATTTGCTTGGCAAAAATTTGTACCTCATTGCCATCTAATTACCCTCAAAACCAAACCCAAACTAGCCCAAGTGGGAAGAAGCATTTTGTGTTGATTCATGGAGCTGGTCTAGGAGCATGGTCTTGGTATAAGGTGGCAACTTTACTCAAAGATTCAGGCCACAATGTCACAGCCCTAGACTTGGGAGCATCTGGGATCAACCCCATTCAGATACAACAACTTCGTTCGATCTCGCAATATGTTGAGCCATTGACAAAGCTCATGGTGTCTCTTCCACCAAAGGACAGGATCATCCTCGTAGGTCACAGCATGGGTGGGGCAGTCATATCTACTTTCATGGAGAGATTTCCTGAGAAAATTGCTGCTGCAGTATACGTCACGGCTTTCATGTCTGGTCCTACTCTCAATTACTCGACTATATTGACAGAGGTTAATAAAAGATTGGACTATTTGGACACTCAATATAGATACGATAATGGGACCAACAACCCTCCAACTTCCTTTCTTATTGGGCCTAAGGCCTTGGCGTTGAAGTTTTACCAGCTCTCCCCAGCACAGGATAAAACGCTAGTGTCCTCTTTGATAAGATTTTCTCCTCTCTTCAATTATGATGTAATAAAGCTCACCAAGGAGAAATATGGATCGGTTCGTAGAGTATTCATTGTGTCTGGGCAAGACCAGGCAATAGTGTTGGATGTGCAGAATTACATTATCAGGAACAATCCACCAGATGAAGTGAAAGTGATTAGCGATTCTGATCACCTGGTCATGATCTCTAGACCATTGAAGCTCTTCTTCCACCTCCAAAACATTGCTGAGAAATATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

292

Amino Acids

32.6

Weight (kDa)

9.34

Isoelectric Point (pI)

36.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 417
AclWI GGATC 3 cut(s) 248, 341, 694
AcsI RAATTY 1 cut(s) 60
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 2 cut(s) 226, 601
AgsI TTSAA 4 cut(s) 13, 577, 649, 832
AjnI CCWGG 2 cut(s) 723, 807
AluBI AGCT 5 cut(s) 149, 304, 589, 667, 835
AluI AGCT 5 cut(s) 149, 304, 589, 667, 835
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 2 cut(s) 41, 318
AlwI GGATC 3 cut(s) 248, 341, 694
AoxI GGCC 3 cut(s) 202, 557, 564
ApeKI GCWGC 2 cut(s) 407, 410
ApoI RAATTY 1 cut(s) 60
Asp700I GAANNNNTTC 1 cut(s) 836
AspS9I GGNCC 3 cut(s) 440, 525, 557
AsuHPI GGTGA 2 cut(s) 661, 797
AvaII GGWCC 2 cut(s) 440, 525
AxyI CCTNAGG 1 cut(s) 561
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 394, 397
BccI CCATC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 441
BciT130I CCWGG 2 cut(s) 725, 809
BclI TGATCA 1 cut(s) 802
BcoDI GTCTC 2 cut(s) 41, 318
BfaI CTAG 5 cut(s) 108, 155, 221, 614, 822
BfmI CTRYAG 1 cut(s) 411
BisI GCNGC 2 cut(s) 408, 411
BlsI GCNGC 2 cut(s) 409, 412
Bme1390I CCNGG 2 cut(s) 725, 809
Bme18I GGWCC 2 cut(s) 440, 525
BmgT120I GGNCC 3 cut(s) 440, 525, 557
BmiI GGNNCC 1 cut(s) 526
BmrFI CCNGG 2 cut(s) 725, 809
BmsI GCATC 1 cut(s) 242
BsaBI GATNNNNATC 1 cut(s) 801
BsaJI CCNNGG 2 cut(s) 567, 672
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 601
Bse21I CCTNAGG 1 cut(s) 561
Bse3DI GCAATG 2 cut(s) 71, 855
Bse8I GATNNNNATC 1 cut(s) 801
BseBI CCWGG 2 cut(s) 725, 809
BseDI CCNNGG 2 cut(s) 567, 672
BseGI GGATG 2 cut(s) 336, 745
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 2 cut(s) 226, 601
BseMI GCAATG 2 cut(s) 71, 855
BseMII CTCAG 2 cut(s) 387, 852
BseRI GAGGAG 1 cut(s) 630
BseXI GCAGC 2 cut(s) 394, 397
BseYI CCCAGC 1 cut(s) 595
BsgI GTGCAG 1 cut(s) 764
BshFI GGCC 3 cut(s) 204, 559, 566
BsiHKAI GWGCWC 1 cut(s) 9
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 2 cut(s) 226, 601
BsmAI GTCTC 2 cut(s) 41, 318
BsmFI GGGAC 1 cut(s) 538
BsnI GGCC 3 cut(s) 204, 559, 566
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 6 cut(s) 240, 273, 333, 686, 802, 816
BspANI GGCC 3 cut(s) 204, 559, 566
BspCNI CTCAG 2 cut(s) 388, 853
BspHI TCATGA 1 cut(s) 813
BspLI GGNNCC 1 cut(s) 526
BspMAI CTGCAG 1 cut(s) 415
BspPI GGATC 3 cut(s) 248, 341, 694
BspQI GCTCTTC 1 cut(s) 842
BsrDI GCAATG 2 cut(s) 71, 855
BssECI CCNNGG 2 cut(s) 567, 672
BssMI GATC 6 cut(s) 240, 273, 333, 686, 802, 816
BssNAI GTATAC 1 cut(s) 418
BssT1I CCWWGG 2 cut(s) 567, 672
Bst1107I GTATAC 1 cut(s) 418
Bst2UI CCWGG 2 cut(s) 725, 809
Bst6I CTCTTC 3 cut(s) 321, 650, 842
BstDEI CTNAG 4 cut(s) 396, 561, 861, 873
BstF5I GGATG 2 cut(s) 336, 745
BstKTI GATC 6 cut(s) 243, 276, 336, 689, 805, 819
BstMAI GTCTC 2 cut(s) 41, 318
BstMBI GATC 6 cut(s) 240, 273, 333, 686, 802, 816
BstNI CCWGG 2 cut(s) 725, 809
BstSCI CCNGG 2 cut(s) 723, 807
BstSFI CTRYAG 1 cut(s) 411
BstV1I GCAGC 2 cut(s) 394, 397
BstZ17I GTATAC 1 cut(s) 418
Bsu36I CCTNAGG 1 cut(s) 561
BsuRI GGCC 3 cut(s) 204, 559, 566
BtsCI GGATG 2 cut(s) 336, 745
CciI TCATGA 1 cut(s) 813
Cfr13I GGNCC 3 cut(s) 440, 525, 557
CsiI ACCWGGT 1 cut(s) 807
Csp6I GTAC 1 cut(s) 66
CviAII CATG 7 cut(s) 143, 162, 307, 355, 382, 433, 814
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 4 cut(s) 396, 561, 861, 873
DpnI GATC 6 cut(s) 242, 275, 335, 688, 804, 818
DpnII GATC 6 cut(s) 240, 273, 333, 686, 802, 816
Eam1104I CTCTTC 3 cut(s) 321, 650, 842
EarI CTCTTC 3 cut(s) 321, 650, 842
Eco130I CCWWGG 2 cut(s) 567, 672
Eco147I AGGCCT 1 cut(s) 566
Eco47I GGWCC 2 cut(s) 440, 525
Eco81I CCTNAGG 1 cut(s) 561
EcoRII CCWGG 2 cut(s) 723, 807
EcoT14I CCWWGG 2 cut(s) 567, 672
ErhI CCWWGG 2 cut(s) 567, 672
FaeI CATG 7 cut(s) 146, 165, 310, 358, 385, 436, 817
FalI AAGNNNNNCTT 2 cut(s) 824, 856
FaqI GGGAC 1 cut(s) 538
FatI CATG 7 cut(s) 142, 161, 306, 354, 381, 432, 813
FbaI TGATCA 1 cut(s) 802
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 2 cut(s) 408, 411
FokI GGATG 2 cut(s) 323, 752
Fsp4HI GCNGC 2 cut(s) 408, 411
FspBI CTAG 5 cut(s) 108, 155, 221, 614, 822
GluI GCNGC 2 cut(s) 408, 411
GsaI CCCAGC 1 cut(s) 599
HaeIII GGCC 3 cut(s) 204, 559, 566
Hin1II CATG 7 cut(s) 146, 165, 310, 358, 385, 436, 817
HinfI GANTC 3 cut(s) 139, 197, 797
HphI GGTGA 2 cut(s) 661, 797
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 2 cut(s) 255, 802
Hpy188III TCNNGA 4 cut(s) 395, 760, 814, 822
Hpy8I GTNNAC 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 2 cut(s) 413, 745
HpyF3I CTNAG 4 cut(s) 396, 561, 861, 873
HpySE526I ACGT 1 cut(s) 420
Hsp92II CATG 7 cut(s) 146, 165, 310, 358, 385, 436, 817
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 6 cut(s) 240, 273, 333, 686, 802, 816
LguI GCTCTTC 1 cut(s) 842
LmnI GCTCC 4 cut(s) 4, 146, 158, 230
Lsp1109I GCAGC 2 cut(s) 394, 397
LweI GCATC 1 cut(s) 242
MabI ACCWGGT 1 cut(s) 807
MaeI CTAG 5 cut(s) 108, 155, 221, 614, 822
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 3 cut(s) 211, 347, 421
MalI GATC 6 cut(s) 242, 275, 335, 688, 804, 818
MboI GATC 6 cut(s) 240, 273, 333, 686, 802, 816
MboII GAAGA 5 cut(s) 133, 308, 637, 829, 832
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 6 cut(s) 60, 82, 402, 451, 649, 748
MmeI TCCRAC 2 cut(s) 563, 717
MnlI CCTC 8 cut(s) 79, 99, 350, 466, 546, 631, 651, 857
MroXI GAANNNNTTC 1 cut(s) 836
MseI TTAA 1 cut(s) 477
MspR9I CCNGG 2 cut(s) 725, 809
MvaI CCWGG 2 cut(s) 725, 809
NdeII GATC 6 cut(s) 240, 273, 333, 686, 802, 816
NlaIII CATG 7 cut(s) 146, 165, 310, 358, 385, 436, 817
NlaIV GGNNCC 1 cut(s) 526
NmuCI GTSAC 3 cut(s) 211, 347, 421
PagI TCATGA 1 cut(s) 813
PceI AGGCCT 1 cut(s) 566
PciSI GCTCTTC 1 cut(s) 842
PdmI GAANNNNTTC 1 cut(s) 836
PfeI GAWTC 3 cut(s) 139, 197, 797
PkrI GCNGC 2 cut(s) 409, 412
Psp6I CCWGG 2 cut(s) 723, 807
PspFI CCCAGC 1 cut(s) 595
PspGI CCWGG 2 cut(s) 723, 807
PspN4I GGNNCC 1 cut(s) 526
PspPI GGNCC 3 cut(s) 440, 525, 557
PstI CTGCAG 1 cut(s) 415
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 842
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 2 cut(s) 408, 411
Sau3AI GATC 6 cut(s) 240, 273, 333, 686, 802, 816
Sau96I GGNCC 3 cut(s) 440, 525, 557
ScrFI CCNGG 2 cut(s) 725, 809
SduI GDGCHC 1 cut(s) 9
SexAI ACCWGGT 1 cut(s) 807
SfaNI GCATC 1 cut(s) 242
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 2 cut(s) 440, 525
Sse9I AATT 6 cut(s) 60, 82, 402, 451, 649, 748
SseBI AGGCCT 1 cut(s) 566
SspI AATATT 1 cut(s) 869
SspMI CTAG 5 cut(s) 108, 155, 221, 614, 822
StuI AGGCCT 1 cut(s) 566
StyD4I CCNGG 2 cut(s) 723, 807
StyI CCWWGG 2 cut(s) 567, 672
TaiI ACGT 1 cut(s) 423
TaqI TCGA 2 cut(s) 272, 458
TasI AATT 6 cut(s) 60, 82, 402, 451, 649, 748
TfiI GAWTC 3 cut(s) 139, 197, 797
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TseFI GTSAC 3 cut(s) 211, 347, 421
TseI GCWGC 2 cut(s) 407, 410
Tsp45I GTSAC 3 cut(s) 211, 347, 421
TspDTI ATGAA 5 cut(s) 131, 370, 421, 694, 792
VpaK11BI GGWCC 2 cut(s) 440, 525
XapI RAATTY 1 cut(s) 60
XbaI TCTAGA 1 cut(s) 821
XmiI GTMKAC 1 cut(s) 417
XmnI GAANNNNTTC 1 cut(s) 836
XspI CTAG 5 cut(s) 108, 155, 221, 614, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.