Prupe.7G141200_v2.0.a1

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000171
Physical Location & Seq
Reverse (-)
15664621 .. 15666498
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G141200.1

Sequence Viewer

Length: 906 bp
ATGTTAATGAGAAGGAAAATGGAGCACATGAAAAACAAGTCTCTTCTCTTTTGTCTCTTACTTATTTGCTTGGCAAAAATTTGTACCTCATCGCCATCTCCACCTCCTCCTAATTACCCTCAAAACCGAACCCAAACTAGCCCAAGTGGGAAGAAGCATTTTGTGTTGATTCATGGAGCTGGTCTTGGAGCATGGTCTTGGTATAAGGTGGCAACTTTACTCAAAGATTCAGGCCACAATGTCACAGCCCTAGACTTGGGAGCATCTGGGATCAACCCAATTCAGATACAACAACTTCGTTCGATCTCGCAATATGTCGAGCCATTGACAAAGCTCATGGTGTCTCTTCCACCAAAGGAGAGGATCATCCTCGTTGGTCACAGCATGAATGGGGCAGTCATATCTATTTTCATGGAGAGATTTCCTGAGAAAATTGCTGCTGCAGTGTACGTCACGGCTTTCATGTCTGGTCCTACTCTCAATTACTCGACTATATTGACAGAGGTTAATAAAAGATTGGACTATTTGGACACTCAATATGGATACGATAATGGGACCAACAACCCTCCAACCTCCTTTCTTGTAGGGCCCAAGGCCTTGGCATTGAAGTTTTACCAGCTCTCCTCAGCACAGGATAAAACGCTAGTGTTCTCTTTGATAAGATTTTCTCCTCTCTTCAATTATGATGTAATAAAGCTCACCAAGGAGAAATATGGATCGGTTCGTAGAGTATTCGTTGTGTCTGGGCAAGACCGGGCAATAGTGTTGGATGTGCAGAATTACATTATCAGGAACAATCCACCAGATGAAGTGAAAGTGATTAGCGATTCTGATCACGTGGTCATGATCTCTAGACCATTGAAGCTCTTCTTCCACCTCCAAAACATTGCTGAGAAATATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_6

Protein Analysis

302

Amino Acids

33.81

Weight (kDa)

9.59

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 278, 371, 724
AcsI RAATTY 1 cut(s) 78
AcvI CACGTG 1 cut(s) 838
AfaI GTAC 2 cut(s) 85, 449
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 3 cut(s) 607, 679, 862
AluBI AGCT 5 cut(s) 179, 334, 619, 697, 865
AluI AGCT 5 cut(s) 179, 334, 619, 697, 865
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 3 cut(s) 45, 59, 348
AlwI GGATC 3 cut(s) 278, 371, 724
AoxI GGCC 3 cut(s) 232, 587, 594
ApaI GGGCCC 1 cut(s) 591
ApeKI GCWGC 2 cut(s) 437, 440
ApoI RAATTY 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 866
AspS9I GGNCC 4 cut(s) 470, 555, 587, 588
AsuC2I CCSGG 1 cut(s) 755
AsuHPI GGTGA 1 cut(s) 691
AvaII GGWCC 2 cut(s) 470, 555
BaeGI GKGCMC 1 cut(s) 591
BanII GRGCYC 1 cut(s) 591
BbrPI CACGTG 1 cut(s) 838
Bbv12I GWGCWC 1 cut(s) 27
BbvCI CCTCAGC 1 cut(s) 625
BbvI GCAGC 2 cut(s) 424, 427
BccI CCATC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 471
BciVI GTATCC 1 cut(s) 536
BclI TGATCA 1 cut(s) 832
BcnI CCSGG 1 cut(s) 755
BcoDI GTCTC 3 cut(s) 45, 59, 348
BfaI CTAG 4 cut(s) 138, 251, 644, 852
BfmI CTRYAG 1 cut(s) 441
BfuI GTATCC 1 cut(s) 536
BisI GCNGC 2 cut(s) 438, 441
BlsI GCNGC 2 cut(s) 439, 442
Bme1390I CCNGG 1 cut(s) 755
Bme18I GGWCC 2 cut(s) 470, 555
BmgT120I GGNCC 4 cut(s) 470, 555, 587, 588
BmiI GGNNCC 2 cut(s) 556, 589
BmrFI CCNGG 1 cut(s) 755
BmsI GCATC 1 cut(s) 272
Bpu10I CCTNAGC 1 cut(s) 625
BpuMI CCSGG 1 cut(s) 755
BsaAI YACGTR 1 cut(s) 838
BsaBI GATNNNNATC 1 cut(s) 831
BsaJI CCNNGG 3 cut(s) 591, 597, 702
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 885
Bse8I GATNNNNATC 1 cut(s) 831
BseDI CCNNGG 3 cut(s) 591, 597, 702
BseGI GGATG 2 cut(s) 366, 775
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 3 cut(s) 417, 639, 882
BseRI GAGGAG 3 cut(s) 96, 613, 660
BseSI GKGCMC 1 cut(s) 591
BseXI GCAGC 2 cut(s) 424, 427
BsgI GTGCAG 1 cut(s) 794
BshFI GGCC 3 cut(s) 234, 589, 596
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 754
BslFI GGGAC 1 cut(s) 568
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 3 cut(s) 45, 59, 348
BsmFI GGGAC 1 cut(s) 568
BsnI GGCC 3 cut(s) 234, 589, 596
Bsp120I GGGCCC 1 cut(s) 587
Bsp1286I GDGCHC 2 cut(s) 27, 591
Bsp143I GATC 6 cut(s) 270, 303, 363, 716, 832, 846
BspANI GGCC 3 cut(s) 234, 589, 596
BspCNI CTCAG 3 cut(s) 418, 638, 883
BspHI TCATGA 1 cut(s) 843
BspLI GGNNCC 2 cut(s) 556, 589
BspMAI CTGCAG 1 cut(s) 445
BspPI GGATC 3 cut(s) 278, 371, 724
BspQI GCTCTTC 1 cut(s) 872
BsrDI GCAATG 1 cut(s) 885
BssECI CCNNGG 3 cut(s) 591, 597, 702
BssMI GATC 6 cut(s) 270, 303, 363, 716, 832, 846
BssT1I CCWWGG 3 cut(s) 591, 597, 702
Bst6I CTCTTC 4 cut(s) 48, 351, 680, 872
BstBAI YACGTR 1 cut(s) 838
BstDEI CTNAG 4 cut(s) 426, 625, 891, 903
BstF5I GGATG 2 cut(s) 366, 775
BstKTI GATC 6 cut(s) 273, 306, 366, 719, 835, 849
BstMAI GTCTC 3 cut(s) 45, 59, 348
BstMBI GATC 6 cut(s) 270, 303, 363, 716, 832, 846
BstSCI CCNGG 1 cut(s) 753
BstSFI CTRYAG 1 cut(s) 441
BstSLI GKGCMC 1 cut(s) 591
BstV1I GCAGC 2 cut(s) 424, 427
BstXI CCANNNNNNTGG 1 cut(s) 598
BsuI GTATCC 1 cut(s) 536
BsuRI GGCC 3 cut(s) 234, 589, 596
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 2 cut(s) 366, 775
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 450
CciI TCATGA 1 cut(s) 843
Cfr13I GGNCC 4 cut(s) 470, 555, 587, 588
Csp6I GTAC 2 cut(s) 84, 448
CviAII CATG 8 cut(s) 28, 173, 192, 337, 385, 412, 463, 844
CviQI GTAC 2 cut(s) 84, 448
DdeI CTNAG 4 cut(s) 426, 625, 891, 903
DpnI GATC 6 cut(s) 272, 305, 365, 718, 834, 848
DpnII GATC 6 cut(s) 270, 303, 363, 716, 832, 846
Eam1104I CTCTTC 4 cut(s) 48, 351, 680, 872
EarI CTCTTC 4 cut(s) 48, 351, 680, 872
Eco130I CCWWGG 3 cut(s) 591, 597, 702
Eco147I AGGCCT 1 cut(s) 596
Eco24I GRGCYC 1 cut(s) 591
Eco47I GGWCC 2 cut(s) 470, 555
Eco72I CACGTG 1 cut(s) 838
EcoO109I RGGNCCY 1 cut(s) 587
EcoT14I CCWWGG 3 cut(s) 591, 597, 702
EcoT38I GRGCYC 1 cut(s) 591
ErhI CCWWGG 3 cut(s) 591, 597, 702
FaeI CATG 8 cut(s) 31, 176, 195, 340, 388, 415, 466, 847
FalI AAGNNNNNCTT 2 cut(s) 854, 886
FaqI GGGAC 1 cut(s) 568
FatI CATG 8 cut(s) 27, 172, 191, 336, 384, 411, 462, 843
FbaI TGATCA 1 cut(s) 832
Fnu4HI GCNGC 2 cut(s) 438, 441
FokI GGATG 2 cut(s) 353, 782
FriOI GRGCYC 1 cut(s) 591
Fsp4HI GCNGC 2 cut(s) 438, 441
FspBI CTAG 4 cut(s) 138, 251, 644, 852
GluI GCNGC 2 cut(s) 438, 441
HaeIII GGCC 3 cut(s) 234, 589, 596
HapII CCGG 1 cut(s) 754
Hin1II CATG 8 cut(s) 31, 176, 195, 340, 388, 415, 466, 847
HinfI GANTC 3 cut(s) 169, 227, 827
HpaII CCGG 1 cut(s) 754
HphI GGTGA 1 cut(s) 691
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 2 cut(s) 285, 832
Hpy188III TCNNGA 4 cut(s) 425, 790, 844, 852
Hpy8I GTNNAC 1 cut(s) 448
HpyAV CCTTC 1 cut(s) 6
HpyCH4IV ACGT 2 cut(s) 450, 837
HpyCH4V TGCA 2 cut(s) 443, 775
HpyF3I CTNAG 4 cut(s) 426, 625, 891, 903
HpySE526I ACGT 2 cut(s) 450, 837
Hsp92II CATG 8 cut(s) 31, 176, 195, 340, 388, 415, 466, 847
Ksp22I TGATCA 1 cut(s) 832
Kzo9I GATC 6 cut(s) 270, 303, 363, 716, 832, 846
LguI GCTCTTC 1 cut(s) 872
LmnI GCTCC 4 cut(s) 22, 176, 188, 260
Lsp1109I GCAGC 2 cut(s) 424, 427
LweI GCATC 1 cut(s) 272
MaeI CTAG 4 cut(s) 138, 251, 644, 852
MaeII ACGT 2 cut(s) 450, 837
MaeIII GTNAC 3 cut(s) 241, 377, 451
MalI GATC 6 cut(s) 272, 305, 365, 718, 834, 848
MboI GATC 6 cut(s) 270, 303, 363, 716, 832, 846
MboII GAAGA 6 cut(s) 35, 163, 338, 667, 859, 862
MhlI GDGCHC 2 cut(s) 27, 591
MluCI AATT 7 cut(s) 78, 112, 279, 432, 481, 679, 778
MmeI TCCRAC 2 cut(s) 593, 747
MroXI GAANNNNTTC 1 cut(s) 866
MseI TTAA 2 cut(s) 5, 507
MspI CCGG 1 cut(s) 754
MspR9I CCNGG 1 cut(s) 755
NciI CCSGG 1 cut(s) 755
NdeII GATC 6 cut(s) 270, 303, 363, 716, 832, 846
NlaIII CATG 8 cut(s) 31, 176, 195, 340, 388, 415, 466, 847
NlaIV GGNNCC 2 cut(s) 556, 589
NmuCI GTSAC 3 cut(s) 241, 377, 451
PagI TCATGA 1 cut(s) 843
PceI AGGCCT 1 cut(s) 596
PciSI GCTCTTC 1 cut(s) 872
PdmI GAANNNNTTC 1 cut(s) 866
PfeI GAWTC 3 cut(s) 169, 227, 827
PkrI GCNGC 2 cut(s) 439, 442
PmaCI CACGTG 1 cut(s) 838
PmlI CACGTG 1 cut(s) 838
Ppu21I YACGTR 1 cut(s) 838
PspCI CACGTG 1 cut(s) 838
PspN4I GGNNCC 2 cut(s) 556, 589
PspOMI GGGCCC 1 cut(s) 587
PspPI GGNCC 4 cut(s) 470, 555, 587, 588
PstI CTGCAG 1 cut(s) 445
RsaI GTAC 2 cut(s) 85, 449
RsaNI GTAC 2 cut(s) 84, 448
SapI GCTCTTC 1 cut(s) 872
SaqAI TTAA 2 cut(s) 5, 507
SatI GCNGC 2 cut(s) 438, 441
Sau3AI GATC 6 cut(s) 270, 303, 363, 716, 832, 846
Sau96I GGNCC 4 cut(s) 470, 555, 587, 588
ScrFI CCNGG 1 cut(s) 755
SduI GDGCHC 2 cut(s) 27, 591
SfaNI GCATC 1 cut(s) 272
SfcI CTRYAG 1 cut(s) 441
SinI GGWCC 2 cut(s) 470, 555
Sse9I AATT 7 cut(s) 78, 112, 279, 432, 481, 679, 778
SseBI AGGCCT 1 cut(s) 596
SspI AATATT 1 cut(s) 899
SspMI CTAG 4 cut(s) 138, 251, 644, 852
StuI AGGCCT 1 cut(s) 596
StyD4I CCNGG 1 cut(s) 753
StyI CCWWGG 3 cut(s) 591, 597, 702
TaiI ACGT 2 cut(s) 453, 840
TaqI TCGA 3 cut(s) 302, 318, 488
TasI AATT 7 cut(s) 78, 112, 279, 432, 481, 679, 778
TfiI GAWTC 3 cut(s) 169, 227, 827
Tru1I TTAA 2 cut(s) 5, 507
Tru9I TTAA 2 cut(s) 5, 507
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 3 cut(s) 241, 377, 451
TseI GCWGC 2 cut(s) 437, 440
Tsp45I GTSAC 3 cut(s) 241, 377, 451
TspDTI ATGAA 6 cut(s) 44, 161, 400, 401, 451, 822
TspRI CASTG 1 cut(s) 450
VpaK11BI GGWCC 2 cut(s) 470, 555
XapI RAATTY 1 cut(s) 78
XbaI TCTAGA 1 cut(s) 851
XmnI GAANNNNTTC 1 cut(s) 866
XspI CTAG 4 cut(s) 138, 251, 644, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.