Rroxscaffold_2G00138950

Salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000171
Physical Location & Seq
Forward (+)
77182624 .. 77184159
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00138950.1

Sequence Viewer

Length: 858 bp
ATGATTAGAGGTAAGCACTTCGTGTTCTTTCTTTTATCTCTTAGCTTGGCAGCAACTACTTGCGGTGCTTCTTCTTCTTTTTGCCAACTGAGCTCTTTCGGGAAGAAGCACTTTGTGCTGATTCATGGAGCATGTCAAGGAGCGTGGACTTGGTACAAGGTGGCAACTCTACTCAAACACTCGGGACACAATGTCACAGCTCTTGACTTGGGAGCATCCGGAATTAACCCGATCCAGGCACAGCAACTCCCTTCGCTCTCTGACTACATTGAACCGTTGACAAAGCTCATGGTGTCTCTGCCGCCAGAGGAGAGGGTTATTCTCGTGGCTCATAGCATGGGTGGAGCTGTTATATCTATTTTCATGGAGAGGTTTCCTGAGAAGATTGCTGCTGCTGTTTATGTCACTGGTTTTATGTCCGGACCTACTCTCAATTACTCCACTATTTTTACAGAGATTAACAAAAAGCTGGATTATATGGACTCTCAGTACAGATATGATGCAGGGCCTAACAATCCTGCAACGTCCTTCCTCACCGGGCCTAAGGTCTTAGCCTCAAAATTCTACCAGCTCTCCCCACCTGAGGATTTAACACTAAGCTTGTCAGTAATGAGGTTTTCTCCTCTCTATAATTATGATGTGATAAAGCTCACCAAGGAGAAATACGGATTGGTTCCAAGAGTATTCATCGTGGCGGATCAAGATCATGGAATAGTCTTGGACGTGCAAAATTTTATGATAAAGAACAATCCACCAAATGAAGTCAAAGTGATTAATGGTTCTGATCACATGGTTATGCTCTGTAGACCGGTGGAGTTGTTTTCCCACCTCCTGGATATTGCTGAGAAATATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

285

Amino Acids

31.69

Weight (kDa)

7.71

Isoelectric Point (pI)

28.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 36 - 144 2.6e-11 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 37 - 267 3.2e-16 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 38 - 268 5.1e-16 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 832
AccI GTMKAC 1 cut(s) 805
AccIII TCCGGA 2 cut(s) 218, 419
AciI CCGC 3 cut(s) 63, 302, 695
AclWI GGATC 2 cut(s) 226, 705
AcsI RAATTY 2 cut(s) 560, 730
AdeI CACNNNGTG 2 cut(s) 22, 115
AfaI GTAC 2 cut(s) 155, 491
AfiI CCNNNNNNNGG 3 cut(s) 235, 583, 832
AgeI ACCGGT 1 cut(s) 808
AgsI TTSAA 1 cut(s) 272
AhdI GACNNNNNGTC 1 cut(s) 191
AjiI CACGTC 1 cut(s) 724
AjnI CCWGG 2 cut(s) 234, 831
AjuI GAANNNNNNNTTGG 2 cut(s) 653, 685
AluBI AGCT 9 cut(s) 45, 93, 200, 286, 347, 469, 571, 600, 649
AluI AGCT 9 cut(s) 45, 93, 200, 286, 347, 469, 571, 600, 649
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 300
AlwI GGATC 2 cut(s) 226, 705
Ama87I CYCGRG 1 cut(s) 181
Aor13HI TCCGGA 2 cut(s) 218, 419
AoxI GGCC 2 cut(s) 506, 539
ApeKI GCWGC 3 cut(s) 50, 389, 392
ApoI RAATTY 2 cut(s) 560, 730
AseI ATTAAT 1 cut(s) 774
AsiGI ACCGGT 1 cut(s) 808
AspS9I GGNCC 3 cut(s) 422, 506, 539
AsuC2I CCSGG 1 cut(s) 538
AsuHPI GGTGA 2 cut(s) 526, 643
AvaI CYCGRG 1 cut(s) 181
AvaII GGWCC 1 cut(s) 422
AxyI CCTNAGG 2 cut(s) 543, 582
BanII GRGCYC 1 cut(s) 95
BauI CACGAG 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 3 cut(s) 62, 376, 379
BciT130I CCWGG 2 cut(s) 236, 833
BclI TGATCA 1 cut(s) 784
BcnI CCSGG 1 cut(s) 538
BcoDI GTCTC 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 802
BisI GCNGC 4 cut(s) 51, 302, 390, 393
BlsI GCNGC 4 cut(s) 52, 303, 391, 394
Bme1390I CCNGG 3 cut(s) 236, 538, 833
Bme18I GGWCC 1 cut(s) 422
BmeRI GACNNNNNGTC 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 181
BmgBI CACGTC 1 cut(s) 724
BmgT120I GGNCC 3 cut(s) 422, 506, 539
BmiI GGNNCC 1 cut(s) 675
BmrFI CCNGG 3 cut(s) 236, 538, 833
BmsI GCATC 2 cut(s) 224, 490
BplI GAGNNNNNCTC 2 cut(s) 604, 636
BpuMI CCSGG 1 cut(s) 538
BsaBI GATNNNNATC 1 cut(s) 702
BsaJI CCNNGG 1 cut(s) 654
BsaWI WCCGGW 3 cut(s) 218, 419, 808
BsaXI ACNNNNNCTCC 4 cut(s) 231, 261, 557, 587
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 583, 832
Bse118I RCCGGY 1 cut(s) 808
Bse1I ACTGG 1 cut(s) 412
Bse21I CCTNAGG 2 cut(s) 543, 582
Bse8I GATNNNNATC 1 cut(s) 702
BseAI TCCGGA 2 cut(s) 218, 419
BseBI CCWGG 2 cut(s) 236, 833
BseDI CCNNGG 1 cut(s) 654
BseGI GGATG 1 cut(s) 215
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 3 cut(s) 235, 583, 832
BseMII CTCAG 5 cut(s) 80, 369, 500, 573, 834
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 2 cut(s) 323, 612
BseXI GCAGC 3 cut(s) 62, 376, 379
BshFI GGCC 2 cut(s) 508, 541
BshTI ACCGGT 1 cut(s) 808
BsiHKAI GWGCWC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 181
BsiSI CCGG 4 cut(s) 219, 420, 537, 809
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 3 cut(s) 235, 583, 832
BsmAI GTCTC 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 2 cut(s) 508, 541
BsoBI CYCGRG 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 95
Bsp13I TCCGGA 2 cut(s) 218, 419
Bsp143I GATC 4 cut(s) 231, 697, 703, 784
BspACI CCGC 3 cut(s) 63, 302, 695
BspANI GGCC 2 cut(s) 508, 541
BspCNI CTCAG 5 cut(s) 81, 370, 499, 574, 835
BspEI TCCGGA 2 cut(s) 218, 419
BspLI GGNNCC 1 cut(s) 675
BspPI GGATC 2 cut(s) 226, 705
BsrFI RCCGGY 1 cut(s) 808
BsrI ACTGG 1 cut(s) 412
BssAI RCCGGY 1 cut(s) 808
BssECI CCNNGG 1 cut(s) 654
BssMI GATC 4 cut(s) 231, 697, 703, 784
BssSI CACGAG 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 654
Bst2BI CACGAG 1 cut(s) 323
Bst2UI CCWGG 2 cut(s) 236, 833
Bst4CI ACNGT 1 cut(s) 276
BstAPI GCANNNNNTGC 1 cut(s) 115
BstDEI CTNAG 9 cut(s) 41, 89, 378, 486, 543, 550, 582, 596, 843
BstF5I GGATG 1 cut(s) 215
BstKTI GATC 4 cut(s) 234, 700, 706, 787
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 4 cut(s) 231, 697, 703, 784
BstMWI GCNNNNNNNGC 2 cut(s) 90, 115
BstNI CCWGG 2 cut(s) 236, 833
BstNSI RCATGY 1 cut(s) 135
BstSCI CCNGG 3 cut(s) 234, 536, 831
BstSFI CTRYAG 1 cut(s) 802
BstV1I GCAGC 3 cut(s) 62, 376, 379
Bsu36I CCTNAGG 2 cut(s) 543, 582
BsuRI GGCC 2 cut(s) 508, 541
BtrI CACGTC 1 cut(s) 724
BtsCI GGATG 1 cut(s) 215
BtsIMutI CAGTG 1 cut(s) 405
Cfr10I RCCGGY 1 cut(s) 808
Cfr13I GGNCC 3 cut(s) 422, 506, 539
Csp6I GTAC 2 cut(s) 154, 490
CspAI ACCGGT 1 cut(s) 808
CspCI CAANNNNNGTGG 2 cut(s) 125, 160
CviAII CATG 7 cut(s) 125, 132, 289, 337, 364, 707, 790
CviQI GTAC 2 cut(s) 154, 490
DdeI CTNAG 9 cut(s) 41, 89, 378, 486, 543, 550, 582, 596, 843
DpnI GATC 4 cut(s) 233, 699, 705, 786
DpnII GATC 4 cut(s) 231, 697, 703, 784
DraIII CACNNNGTG 2 cut(s) 22, 115
DriI GACNNNNNGTC 1 cut(s) 191
Eam1105I GACNNNNNGTC 1 cut(s) 191
EciI GGCGGA 1 cut(s) 710
Ecl136II GAGCTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 654
Eco24I GRGCYC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 422
Eco53kI GAGCTC 1 cut(s) 93
Eco81I CCTNAGG 2 cut(s) 543, 582
Eco88I CYCGRG 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 506
EcoRII CCWGG 2 cut(s) 234, 831
EcoT14I CCWWGG 1 cut(s) 654
EcoT38I GRGCYC 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 654
FaeI CATG 7 cut(s) 128, 135, 292, 340, 367, 710, 793
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 1 cut(s) 198
FatI CATG 7 cut(s) 124, 131, 288, 336, 363, 706, 789
FbaI TGATCA 1 cut(s) 784
FblI GTMKAC 1 cut(s) 805
Fnu4HI GCNGC 4 cut(s) 51, 302, 390, 393
FokI GGATG 1 cut(s) 202
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 4 cut(s) 51, 302, 390, 393
GluI GCNGC 4 cut(s) 51, 302, 390, 393
HaeIII GGCC 2 cut(s) 508, 541
HapII CCGG 4 cut(s) 219, 420, 537, 809
Hin1II CATG 7 cut(s) 128, 135, 292, 340, 367, 710, 793
HincII GTYRAC 1 cut(s) 279
HindII GTYRAC 1 cut(s) 279
HindIII AAGCTT 1 cut(s) 598
HinfI GANTC 2 cut(s) 121, 482
HpaII CCGG 4 cut(s) 219, 420, 537, 809
HphI GGTGA 2 cut(s) 526, 643
Hpy166II GTNNAC 3 cut(s) 147, 279, 806
Hpy188I TCNGA 2 cut(s) 262, 784
Hpy188III TCNNGA 7 cut(s) 100, 183, 203, 219, 377, 420, 701
Hpy8I GTNNAC 3 cut(s) 147, 279, 806
HpyAV CCTTC 2 cut(s) 261, 538
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4IV ACGT 2 cut(s) 524, 723
HpyCH4V TGCA 3 cut(s) 503, 521, 727
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 115
HpyF3I CTNAG 9 cut(s) 41, 89, 378, 486, 543, 550, 582, 596, 843
HpySE526I ACGT 2 cut(s) 524, 723
Hsp92II CATG 7 cut(s) 128, 135, 292, 340, 367, 710, 793
Kpn2I TCCGGA 2 cut(s) 218, 419
Ksp22I TGATCA 1 cut(s) 784
Kzo9I GATC 4 cut(s) 231, 697, 703, 784
LmnI GCTCC 4 cut(s) 128, 140, 212, 344
Lsp1109I GCAGC 3 cut(s) 62, 376, 379
LweI GCATC 2 cut(s) 224, 490
MaeII ACGT 2 cut(s) 524, 723
MaeIII GTNAC 2 cut(s) 193, 403
MalI GATC 4 cut(s) 233, 699, 705, 786
MboI GATC 4 cut(s) 231, 697, 703, 784
MboII GAAGA 4 cut(s) 63, 66, 115, 394
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 5 cut(s) 222, 433, 560, 631, 730
MlyI GAGTC 1 cut(s) 476
MnlI CCTC 9 cut(s) 301, 306, 363, 542, 565, 577, 606, 633, 839
MroI TCCGGA 2 cut(s) 218, 419
MseI TTAA 5 cut(s) 225, 459, 590, 774, 856
MslI CAYNNNNRTG 1 cut(s) 794
MspI CCGG 4 cut(s) 219, 420, 537, 809
MspR9I CCNGG 3 cut(s) 236, 538, 833
MvaI CCWGG 2 cut(s) 236, 833
MwoI GCNNNNNNNGC 2 cut(s) 90, 115
NciI CCSGG 1 cut(s) 538
NdeII GATC 4 cut(s) 231, 697, 703, 784
NlaIII CATG 7 cut(s) 128, 135, 292, 340, 367, 710, 793
NlaIV GGNNCC 1 cut(s) 675
NmuCI GTSAC 2 cut(s) 193, 403
NspI RCATGY 1 cut(s) 135
PfeI GAWTC 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 832
PfoI TCCNGGA 1 cut(s) 831
PinAI ACCGGT 1 cut(s) 808
PkrI GCNGC 4 cut(s) 52, 303, 391, 394
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
PshBI ATTAAT 1 cut(s) 774
Psp124BI GAGCTC 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 234, 831
PspGI CCWGG 2 cut(s) 234, 831
PspN4I GGNNCC 1 cut(s) 675
PspPI GGNCC 3 cut(s) 422, 506, 539
RsaI GTAC 2 cut(s) 155, 491
RsaNI GTAC 2 cut(s) 154, 490
RseI CAYNNNNRTG 1 cut(s) 794
SacI GAGCTC 1 cut(s) 95
SaqAI TTAA 5 cut(s) 225, 459, 590, 774, 856
SatI GCNGC 4 cut(s) 51, 302, 390, 393
Sau3AI GATC 4 cut(s) 231, 697, 703, 784
Sau96I GGNCC 3 cut(s) 422, 506, 539
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 3 cut(s) 236, 538, 833
SduI GDGCHC 1 cut(s) 95
SfaNI GCATC 2 cut(s) 224, 490
SfcI CTRYAG 1 cut(s) 802
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 794
Sse9I AATT 5 cut(s) 222, 433, 560, 631, 730
SsiI CCGC 3 cut(s) 63, 302, 695
SspI AATATT 1 cut(s) 851
SstI GAGCTC 1 cut(s) 95
StyD4I CCNGG 3 cut(s) 234, 536, 831
StyI CCWWGG 1 cut(s) 654
TaaI ACNGT 1 cut(s) 276
TaiI ACGT 2 cut(s) 527, 726
TasI AATT 5 cut(s) 222, 433, 560, 631, 730
TatI WGTACW 1 cut(s) 489
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 5 cut(s) 225, 459, 590, 774, 856
Tru9I TTAA 5 cut(s) 225, 459, 590, 774, 856
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 2 cut(s) 193, 403
TseI GCWGC 3 cut(s) 50, 389, 392
Tsp45I GTSAC 2 cut(s) 193, 403
TspDTI ATGAA 4 cut(s) 113, 352, 676, 774
TspGWI ACGGA 1 cut(s) 681
TspRI CASTG 1 cut(s) 412
Van91I CCANNNNNTGG 1 cut(s) 832
VpaK11BI GGWCC 1 cut(s) 422
VspI ATTAAT 1 cut(s) 774
XapI RAATTY 2 cut(s) 560, 730
XceI RCATGY 1 cut(s) 135
XmiI GTMKAC 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.