MD03G1273700.v1.1

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000171
Physical Location & Seq
Reverse (-)
35697597 .. 35699201
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1273700.v1.1.491

Sequence Viewer

Length: 870 bp
ATGATAAAAAAGCATTTTGTGCTTTTTCTTTTATTTATTTGCTTAGCAAAACATAGTACATCATCCCTCCAACCCCAACCCAACTTCAACAACAAACCCCAAATTCCAACCGGGAATAAACATTTTGTGTTGATACATGGAGCTTGTCATGGAGCATGGAGTTGGTATAAGGTCGCGACTCTCCTGAAGGACTCAGGTCACAATGTCACAGCTCTAGACTTAGGAGCATCCGGGATCAACCCGATCCGGGTACAGCAACTCCCTTCGTTATCGGAATACGTCGAGCCTTTGACGGAGCTCATGGTGTCACTACCACCAAAGGAGAAGGTAATCCTTGTAGCTCACAGTTTGGGTGGAGCCGTAATATCTATTTTCATGGAGAGGTTTCCTCAAAAAATTGCTGCTGCCGTATATGTGACGGCTTTCATGTCTGGTCCAACTCTTAATTACTCAACTATATTTGCAGAGGTTACCAAAAGATTTGATTTTATGGACTCTCAGTTCAGATATGATAACGGGACCAACAACCCTGCAACCTCATTTCTCTTTGGGCCTAATGTCTTGGCGACAAGCTTTTACCAGCTCTCACCACCACAGGATTCAACCCTAGGGTTATCGTTGGTGAGATTTTCTCCTCTATACAATTACCATGTAATAAAGCTCACGGAAGAGAAATATGGATCAGTTACTAGAGTATTCATCGTGTCCGACCAAGACCATGCGATAGTGTTGGATGTGCAAAACTACATGATAAAAAACAATCCGCCAACTGAAGTGAAAGTGATAAAAGGTTCTGATCACATGGTCATGCTCTCTAAATCCGTGGAGTTGTTCTCCCGTCTCCAAAATATTGCTGAGAAATATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

290

Amino Acids

32.32

Weight (kDa)

8.9

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 41 - 272 1e-16 alpha/beta hydrolase fold
Hydrolase_4 PF12146 41 - 148 2.3e-10 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 42 - 274 3.8e-18 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 176
AciI CCGC 1 cut(s) 764
AclWI GGATC 3 cut(s) 238, 242, 688
AcsI RAATTY 1 cut(s) 102
AcuI CTGAAG 2 cut(s) 206, 792
AfaI GTAC 2 cut(s) 58, 252
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 2 cut(s) 88, 603
AloI GAACNNNNNNTCC 2 cut(s) 485, 517
AluBI AGCT 7 cut(s) 143, 212, 298, 341, 573, 583, 661
AluI AGCT 7 cut(s) 143, 212, 298, 341, 573, 583, 661
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 845
AlwI GGATC 3 cut(s) 238, 242, 688
AoxI GGCC 1 cut(s) 551
ApeKI GCWGC 2 cut(s) 401, 404
ApoI RAATTY 1 cut(s) 102
AspA2I CCTAGG 1 cut(s) 607
AspS9I GGNCC 3 cut(s) 434, 519, 551
AsuC2I CCSGG 3 cut(s) 112, 232, 248
AsuHPI GGTGA 2 cut(s) 579, 634
AvaII GGWCC 2 cut(s) 434, 519
AvrII CCTAGG 1 cut(s) 607
BanII GRGCYC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 300
BbvI GCAGC 2 cut(s) 388, 391
BceAI ACGGC 3 cut(s) 344, 392, 435
BclI TGATCA 1 cut(s) 796
BcnI CCSGG 3 cut(s) 112, 232, 248
BcoDI GTCTC 1 cut(s) 845
BfaI CTAG 3 cut(s) 215, 608, 690
BisI GCNGC 2 cut(s) 402, 405
BlnI CCTAGG 1 cut(s) 607
BlpI GCTNAGC 1 cut(s) 43
BlsI GCNGC 2 cut(s) 403, 406
Bme1390I CCNGG 3 cut(s) 112, 232, 248
Bme18I GGWCC 2 cut(s) 434, 519
BmgT120I GGNCC 3 cut(s) 434, 519, 551
BmiI GGNNCC 2 cut(s) 358, 520
BmrFI CCNGG 3 cut(s) 112, 232, 248
BmsI GCATC 1 cut(s) 236
BoxI GACNNNNGTC 1 cut(s) 195
BplI GAGNNNNNCTC 6 cut(s) 373, 405, 616, 648, 818, 850
Bpu1102I GCTNAGC 1 cut(s) 43
BpuMI CCSGG 3 cut(s) 112, 232, 248
BsaJI CCNNGG 2 cut(s) 607, 822
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 607, 822
BseGI GGATG 3 cut(s) 62, 227, 739
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMII CTCAG 3 cut(s) 207, 512, 846
BseRI GAGGAG 1 cut(s) 624
BseXI GCAGC 2 cut(s) 388, 391
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 1 cut(s) 553
BsiHKAI GWGCWC 1 cut(s) 300
BsiSI CCGG 3 cut(s) 111, 231, 247
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 845
BsmBI CGTCTC 1 cut(s) 845
BsmFI GGGAC 1 cut(s) 532
BsnI GGCC 1 cut(s) 553
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 4 cut(s) 234, 243, 680, 796
Bsp1720I GCTNAGC 1 cut(s) 43
Bsp68I TCGCGA 1 cut(s) 176
BspACI CCGC 1 cut(s) 764
BspANI GGCC 1 cut(s) 553
BspCNI CTCAG 3 cut(s) 206, 511, 847
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 2 cut(s) 358, 520
BspPI GGATC 3 cut(s) 238, 242, 688
BssECI CCNNGG 2 cut(s) 607, 822
BssMI GATC 4 cut(s) 234, 243, 680, 796
BssT1I CCWWGG 1 cut(s) 607
Bst4CI ACNGT 1 cut(s) 347
Bst6I CTCTTC 1 cut(s) 663
BstAPI GCANNNNNTGC 1 cut(s) 19
BstDEI CTNAG 5 cut(s) 43, 193, 220, 498, 855
BstDSI CCRYGG 1 cut(s) 822
BstEII GGTNACC 1 cut(s) 469
BstF5I GGATG 3 cut(s) 62, 227, 739
BstFNI CGCG 1 cut(s) 176
BstKTI GATC 4 cut(s) 237, 246, 683, 799
BstMAI GTCTC 1 cut(s) 845
BstMBI GATC 4 cut(s) 234, 243, 680, 796
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstPAI GACNNNNGTC 1 cut(s) 195
BstPI GGTNACC 1 cut(s) 469
BstSCI CCNGG 3 cut(s) 110, 230, 246
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 388, 391
BsuRI GGCC 1 cut(s) 553
BtgI CCRYGG 1 cut(s) 822
BtsCI GGATG 3 cut(s) 62, 227, 739
BtuMI TCGCGA 1 cut(s) 176
Cfr13I GGNCC 3 cut(s) 434, 519, 551
Csp6I GTAC 2 cut(s) 57, 251
CviQI GTAC 2 cut(s) 57, 251
DdeI CTNAG 5 cut(s) 43, 193, 220, 498, 855
DpnI GATC 4 cut(s) 236, 245, 682, 798
DpnII GATC 4 cut(s) 234, 243, 680, 796
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
EciI GGCGGA 1 cut(s) 753
Ecl136II GAGCTC 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 607
Eco24I GRGCYC 1 cut(s) 300
Eco47I GGWCC 2 cut(s) 434, 519
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 2 cut(s) 206, 792
Eco91I GGTNACC 1 cut(s) 469
EcoICRI GAGCTC 1 cut(s) 298
EcoO65I GGTNACC 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 607
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 607
Esp3I CGTCTC 1 cut(s) 845
FaqI GGGAC 1 cut(s) 532
FbaI TGATCA 1 cut(s) 796
Fnu4HI GCNGC 2 cut(s) 402, 405
FokI GGATG 3 cut(s) 49, 214, 746
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 2 cut(s) 402, 405
FspBI CTAG 3 cut(s) 215, 608, 690
GluI GCNGC 2 cut(s) 402, 405
HaeIII GGCC 1 cut(s) 553
HapII CCGG 3 cut(s) 111, 231, 247
HindIII AAGCTT 1 cut(s) 571
HinfI GANTC 4 cut(s) 178, 191, 494, 599
HpaII CCGG 3 cut(s) 111, 231, 247
HphI GGTGA 2 cut(s) 579, 634
Hpy188I TCNGA 4 cut(s) 274, 506, 709, 796
Hpy188III TCNNGA 3 cut(s) 175, 184, 215
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 3 cut(s) 181, 273, 319
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 3 cut(s) 464, 533, 739
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 5 cut(s) 43, 193, 220, 498, 855
HpySE526I ACGT 1 cut(s) 279
Ksp22I TGATCA 1 cut(s) 796
Kzo9I GATC 4 cut(s) 234, 243, 680, 796
LmnI GCTCC 5 cut(s) 140, 152, 224, 295, 356
LpnPI CCDG 9 cut(s) 124, 180, 197, 244, 260, 417, 543, 581, 593
Lsp1109I GCAGC 2 cut(s) 388, 391
LweI GCATC 1 cut(s) 236
MaeI CTAG 3 cut(s) 215, 608, 690
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 6 cut(s) 197, 205, 306, 415, 469, 685
MalI GATC 4 cut(s) 236, 245, 682, 798
MboI GATC 4 cut(s) 234, 243, 680, 796
MboII GAAGA 1 cut(s) 680
MhlI GDGCHC 1 cut(s) 300
MluCI AATT 4 cut(s) 102, 396, 445, 643
MlyI GAGTC 3 cut(s) 172, 185, 488
MmeI TCCRAC 5 cut(s) 94, 131, 461, 711, 732
MnlI CCTC 6 cut(s) 77, 375, 399, 460, 547, 645
MseI TTAA 1 cut(s) 444
MslI CAYNNNNRTG 1 cut(s) 806
MspI CCGG 3 cut(s) 111, 231, 247
MspR9I CCNGG 3 cut(s) 112, 232, 248
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 19
NciI CCSGG 3 cut(s) 112, 232, 248
NdeII GATC 4 cut(s) 234, 243, 680, 796
NlaIV GGNNCC 2 cut(s) 358, 520
NmuCI GTSAC 4 cut(s) 197, 205, 306, 415
NruI TCGCGA 1 cut(s) 176
PfeI GAWTC 1 cut(s) 599
PfoI TCCNGGA 1 cut(s) 230
PkrI GCNGC 2 cut(s) 403, 406
PleI GAGTC 3 cut(s) 172, 185, 488
PpsI GAGTC 3 cut(s) 172, 185, 488
PshAI GACNNNNGTC 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 300
PspEI GGTNACC 1 cut(s) 469
PspN4I GGNNCC 2 cut(s) 358, 520
PspPI GGNCC 3 cut(s) 434, 519, 551
RruI TCGCGA 1 cut(s) 176
RsaI GTAC 2 cut(s) 58, 252
RsaNI GTAC 2 cut(s) 57, 251
RseI CAYNNNNRTG 1 cut(s) 806
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 2 cut(s) 402, 405
Sau3AI GATC 4 cut(s) 234, 243, 680, 796
Sau96I GGNCC 3 cut(s) 434, 519, 551
SchI GAGTC 3 cut(s) 172, 185, 488
ScrFI CCNGG 3 cut(s) 112, 232, 248
SduI GDGCHC 1 cut(s) 300
SfaNI GCATC 1 cut(s) 236
SinI GGWCC 2 cut(s) 434, 519
SmiMI CAYNNNNRTG 1 cut(s) 806
Sse9I AATT 4 cut(s) 102, 396, 445, 643
SsiI CCGC 1 cut(s) 764
SspI AATATT 2 cut(s) 850, 863
SspMI CTAG 3 cut(s) 215, 608, 690
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 3 cut(s) 110, 230, 246
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 1 cut(s) 347
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 282
TasI AATT 4 cut(s) 102, 396, 445, 643
TatI WGTACW 1 cut(s) 56
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TseFI GTSAC 4 cut(s) 197, 205, 306, 415
TseI GCWGC 2 cut(s) 401, 404
Tsp45I GTSAC 4 cut(s) 197, 205, 306, 415
TspDTI ATGAA 4 cut(s) 364, 415, 688, 855
TspGWI ACGGA 3 cut(s) 308, 680, 811
VpaK11BI GGWCC 2 cut(s) 434, 519
XapI RAATTY 1 cut(s) 102
XbaI TCTAGA 1 cut(s) 214
XmaJI CCTAGG 1 cut(s) 607
XspI CTAG 3 cut(s) 215, 608, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.