pycom02g12780

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000171
Physical Location & Seq
Forward (+)
9336941 .. 9338088
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g12780.3

Sequence Viewer

Length: 792 bp
ATGTCTTCCTCATCCCCAAACCCAGATGCCAATAAGAAGCATTTTGTGCTGATTCACGGAGCCTGTCACGGGGCATGGTGCTGGTATAAGTTATCAGCTTTACTAACCTCTGCAGGTTACAATGTCACAGCCCTAGACCTAGCAGCATGTGGGATCCACCCAAAGGATGTAAAATATGTACAGACCTTCTCGGATTATGCTGAGCCATTGATCAAATTCATGGAGACTCTCCCACCAGAGGAGAGCGTTATCCTAGTAGGCCACAGCTTCGGTGGGCCCGTCATATCTATTGCCATGGAGATGTTTCCTGAGAAAATATTGGCGGCTGTTTTCGCCACCGCTTTCATGCCTAGTCCTACTTTCAGTTACCCTCATATAGTAGAGAAGATGTTTGCTGGTGTGGATTTGATGGACTATTACCATAGATTTGATAATGGACCCAACAATCCTCCAACTTCGGCAATTTTCGGGCCTAAGATCATGTCGTTACTATTGTACCAGCTCTCGCCACCAGAGGATGTAAAACTAGCATCATCCTTGTTGAGGTTCTGTCCTGTACTGATTCATGATGAAATAAAACTCACCAATGAGAAATATGGATCAGTTCGTAAAGTGTTTATTGTGTGCGACCAAGATCTTATAATACCGGAGAAATGGCAGAGGTGGATGATCGATGAAAATCCACCGAATGAAGTGCAGGTGATAAATGGTGCTGATCACATGGTAATGTTCTCTAAACCGCAGGAGTTGTTCTCCTGCCTCCAGGCGATTTCTGTATCATCATCATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

264

Amino Acids

29.36

Weight (kDa)

5.54

Isoelectric Point (pI)

53.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 641
AarI CACCTGC 1 cut(s) 688
Acc36I ACCTGC 2 cut(s) 104, 688
AciI CCGC 3 cut(s) 323, 339, 740
AclWI GGATC 3 cut(s) 148, 161, 607
AcsI RAATTY 1 cut(s) 215
AfaI GTAC 3 cut(s) 180, 497, 558
AfiI CCNNNNNNNGG 4 cut(s) 69, 163, 238, 543
AjnI CCWGG 1 cut(s) 762
AluBI AGCT 3 cut(s) 98, 267, 502
AluI AGCT 3 cut(s) 98, 267, 502
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 3 cut(s) 148, 161, 607
AoxI GGCC 3 cut(s) 259, 275, 470
ApaI GGGCCC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 215
AspS9I GGNCC 4 cut(s) 275, 276, 437, 470
AsuHPI GGTGA 2 cut(s) 574, 712
AvaII GGWCC 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 279
BaeI ACNNNNGTAYC 2 cut(s) 479, 512
BamHI GGATCC 1 cut(s) 153
BanII GRGCYC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 155
BccI CCATC 1 cut(s) 403
BcgI CGANNNNNNTGC 2 cut(s) 676, 710
BciT130I CCWGG 1 cut(s) 764
BclI TGATCA 2 cut(s) 210, 715
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 6 cut(s) 134, 140, 254, 351, 527, 790
BfmI CTRYAG 1 cut(s) 111
BfuAI ACCTGC 2 cut(s) 104, 688
BglII AGATCT 1 cut(s) 634
BisI GCNGC 2 cut(s) 144, 324
BlpI GCTNAGC 1 cut(s) 201
BlsI GCNGC 2 cut(s) 145, 325
Bme1390I CCNGG 1 cut(s) 764
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 4 cut(s) 275, 276, 437, 470
BmiI GGNNCC 4 cut(s) 61, 155, 277, 439
BmrFI CCNGG 1 cut(s) 764
BmsI GCATC 2 cut(s) 16, 539
BplI GAGNNNNNCTC 2 cut(s) 737, 769
BpmI CTGGAG 1 cut(s) 746
Bpu1102I GCTNAGC 1 cut(s) 201
Bsa29I ATCGAT 1 cut(s) 672
BsaBI GATNNNNATC 1 cut(s) 678
BsaJI CCNNGG 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 646
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 163, 238, 543
Bse8I GATNNNNATC 1 cut(s) 678
BseBI CCWGG 1 cut(s) 764
BseCI ATCGAT 1 cut(s) 672
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 5 cut(s) 11, 172, 523, 533, 672
BseJI GATNNNNATC 1 cut(s) 678
BseLI CCNNNNNNNGG 4 cut(s) 69, 163, 238, 543
BseMII CTCAG 2 cut(s) 192, 300
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 279
BseXI GCAGC 1 cut(s) 155
BsgI GTGCAG 1 cut(s) 716
BshFI GGCC 3 cut(s) 261, 277, 472
BshVI ATCGAT 1 cut(s) 672
BsiSI CCGG 1 cut(s) 647
BslI CCNNNNNNNGG 4 cut(s) 69, 163, 238, 543
BsmAI GTCTC 1 cut(s) 218
BsnI GGCC 3 cut(s) 261, 277, 472
Bsp120I GGGCCC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 279
Bsp1407I TGTACA 1 cut(s) 178
Bsp143I GATC 7 cut(s) 153, 210, 477, 599, 634, 669, 715
Bsp1720I GCTNAGC 1 cut(s) 201
Bsp19I CCATGG 1 cut(s) 294
BspACI CCGC 3 cut(s) 323, 339, 740
BspANI GGCC 3 cut(s) 261, 277, 472
BspCNI CTCAG 2 cut(s) 193, 301
BspDI ATCGAT 1 cut(s) 672
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 4 cut(s) 61, 155, 277, 439
BspMAI CTGCAG 1 cut(s) 115
BspMI ACCTGC 2 cut(s) 104, 688
BspPI GGATC 3 cut(s) 148, 161, 607
BsrGI TGTACA 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 7 cut(s) 153, 210, 477, 599, 634, 669, 715
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 764
BstAPI GCANNNNNTGC 1 cut(s) 46
BstAUI TGTACA 1 cut(s) 178
BstDEI CTNAG 3 cut(s) 201, 309, 474
BstDSI CCRYGG 1 cut(s) 294
BstENI CCTNNNNNAGG 1 cut(s) 541
BstF5I GGATG 5 cut(s) 11, 172, 523, 533, 672
BstKTI GATC 7 cut(s) 156, 213, 480, 602, 637, 672, 718
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 7 cut(s) 153, 210, 477, 599, 634, 669, 715
BstMWI GCNNNNNNNGC 2 cut(s) 46, 332
BstNI CCWGG 1 cut(s) 764
BstNSI RCATGY 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 762
BstSFI CTRYAG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 155
BstX2I RGATCY 2 cut(s) 153, 634
BstYI RGATCY 2 cut(s) 153, 634
Bsu15I ATCGAT 1 cut(s) 672
BsuRI GGCC 3 cut(s) 261, 277, 472
BsuTUI ATCGAT 1 cut(s) 672
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 5 cut(s) 11, 172, 523, 533, 672
BveI ACCTGC 2 cut(s) 104, 688
CciI TCATGA 1 cut(s) 565
Cfr13I GGNCC 4 cut(s) 275, 276, 437, 470
ClaI ATCGAT 1 cut(s) 672
Csp6I GTAC 3 cut(s) 179, 496, 557
CviAII CATG 8 cut(s) 75, 147, 220, 295, 346, 481, 566, 721
CviQI GTAC 3 cut(s) 179, 496, 557
DdeI CTNAG 3 cut(s) 201, 309, 474
DpnI GATC 7 cut(s) 155, 212, 479, 601, 636, 671, 717
DpnII GATC 7 cut(s) 153, 210, 477, 599, 634, 669, 715
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 437
EcoNI CCTNNNNNAGG 1 cut(s) 541
EcoRII CCWGG 1 cut(s) 762
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 8 cut(s) 78, 150, 223, 298, 349, 484, 569, 724
FatI CATG 8 cut(s) 74, 146, 219, 294, 345, 480, 565, 720
FbaI TGATCA 2 cut(s) 210, 715
Fnu4HI GCNGC 2 cut(s) 144, 324
FokI GGATG 4 cut(s) 179, 520, 530, 679
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 2 cut(s) 144, 324
FspBI CTAG 6 cut(s) 134, 140, 254, 351, 527, 790
GluI GCNGC 2 cut(s) 144, 324
GsuI CTGGAG 1 cut(s) 746
HaeIII GGCC 3 cut(s) 261, 277, 472
HapII CCGG 1 cut(s) 647
Hin1II CATG 8 cut(s) 78, 150, 223, 298, 349, 484, 569, 724
HinfI GANTC 3 cut(s) 52, 226, 562
HpaII CCGG 1 cut(s) 647
HphI GGTGA 2 cut(s) 574, 712
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 308, 566
HpyAV CCTTC 1 cut(s) 196
HpyCH4V TGCA 2 cut(s) 113, 697
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 332
HpyF3I CTNAG 3 cut(s) 201, 309, 474
Hsp92II CATG 8 cut(s) 78, 150, 223, 298, 349, 484, 569, 724
Ksp22I TGATCA 2 cut(s) 210, 715
Kzo9I GATC 7 cut(s) 153, 210, 477, 599, 634, 669, 715
LmnI GCTCC 1 cut(s) 59
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 2 cut(s) 16, 539
MaeI CTAG 6 cut(s) 134, 140, 254, 351, 527, 790
MaeIII GTNAC 5 cut(s) 65, 116, 124, 365, 486
MalI GATC 7 cut(s) 155, 212, 479, 601, 636, 671, 717
MboI GATC 7 cut(s) 153, 210, 477, 599, 634, 669, 715
MboII GAAGA 1 cut(s) 397
MflI RGATCY 2 cut(s) 153, 634
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 2 cut(s) 215, 462
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 9 cut(s) 19, 118, 232, 381, 459, 508, 537, 654, 770
MslI CAYNNNNRTG 2 cut(s) 299, 725
MspI CCGG 1 cut(s) 647
MspR9I CCNGG 1 cut(s) 764
MvaI CCWGG 1 cut(s) 764
MwoI GCNNNNNNNGC 2 cut(s) 46, 332
NcoI CCATGG 1 cut(s) 294
NdeII GATC 7 cut(s) 153, 210, 477, 599, 634, 669, 715
NlaIII CATG 8 cut(s) 78, 150, 223, 298, 349, 484, 569, 724
NlaIV GGNNCC 4 cut(s) 61, 155, 277, 439
NmuCI GTSAC 2 cut(s) 65, 124
NspI RCATGY 1 cut(s) 150
PagI TCATGA 1 cut(s) 565
PaqCI CACCTGC 1 cut(s) 688
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 2 cut(s) 52, 562
PkrI GCNGC 2 cut(s) 145, 325
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PsiI TTATAA 1 cut(s) 641
Psp6I CCWGG 1 cut(s) 762
PspGI CCWGG 1 cut(s) 762
PspN4I GGNNCC 4 cut(s) 61, 155, 277, 439
PspOMI GGGCCC 1 cut(s) 275
PspPI GGNCC 4 cut(s) 275, 276, 437, 470
PstI CTGCAG 1 cut(s) 115
PsuI RGATCY 2 cut(s) 153, 634
RsaI GTAC 3 cut(s) 180, 497, 558
RsaNI GTAC 3 cut(s) 179, 496, 557
RseI CAYNNNNRTG 2 cut(s) 299, 725
SatI GCNGC 2 cut(s) 144, 324
Sau3AI GATC 7 cut(s) 153, 210, 477, 599, 634, 669, 715
Sau96I GGNCC 4 cut(s) 275, 276, 437, 470
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 764
SduI GDGCHC 1 cut(s) 279
SfaNI GCATC 2 cut(s) 16, 539
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 2 cut(s) 299, 725
Sse9I AATT 2 cut(s) 215, 462
SsiI CCGC 3 cut(s) 323, 339, 740
SspI AATATT 1 cut(s) 318
SspMI CTAG 6 cut(s) 134, 140, 254, 351, 527, 790
StyD4I CCNGG 1 cut(s) 762
StyI CCWWGG 1 cut(s) 294
TaqI TCGA 1 cut(s) 672
TasI AATT 2 cut(s) 215, 462
TatI WGTACW 2 cut(s) 178, 556
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 2 cut(s) 52, 562
TseFI GTSAC 2 cut(s) 65, 124
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 2 cut(s) 65, 124
TspDTI ATGAA 6 cut(s) 208, 334, 554, 585, 690, 705
TspGWI ACGGA 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 437
XagI CCTNNNNNAGG 1 cut(s) 541
XapI RAATTY 1 cut(s) 215
XceI RCATGY 1 cut(s) 150
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
XspI CTAG 6 cut(s) 134, 140, 254, 351, 527, 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.