Rw2G013390

Salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000171
Physical Location & Seq
Reverse (-)
14296792 .. 14298527
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G013390.1

Sequence Viewer

Length: 570 bp
ATGGTGTCTCTGCCGCCAGAGGAGAGGGTTATTCTCGTGGCTCATAGCATGGGTGGAGCTGTTATATCTATTTTCATGGAGAGGTTTCCTGAGAAGATTGCTGCTGCTGTTTATGTCACTGGTTTTATGTCCGGACCTACTCTCAATTACTCCACTATTTTTACAGAGATTAACAAAAAGCTGGATTATATGGACTCTCAGTACAGATATGAGGCAGGGCCTAACAATCCTGCAACGTCCTTCCTCACCGGGCCCATGGTCTTAGCCTCAAAATTCTACCAGCTCTCCCCCCCTGAGGATTTAACACTAAGTTTGTCAGTAATGAGGTTTTCTCCTCTCTATAATTATGATGTGATAAAGCTCACCGAGGAGAAATATGGGTCGGTTCCAAGAGTATTCATCGTGGCGGAACAAGATCATGCAATAGTCTTGGACGTGCAAAATTTTATGATAAAGAACAATCCACCAAATGAAGTCAAAGTGATTAATGGTTCTGATCACATGGTTATGCTCTGTAGACCGGTGGAGTTGTTTTCCCACCTCCAGGATATTGCTGAGAAATATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

189

Amino Acids

21.37

Weight (kDa)

5.19

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_6 PF12697 8 - 172 2.4e-09 Alpha/beta hydrolase family
Abhydrolase_1 PF00561 8 - 171 2.4e-07 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 517
AccIII TCCGGA 1 cut(s) 131
AciI CCGC 2 cut(s) 14, 407
AcsI RAATTY 2 cut(s) 272, 442
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 295, 544
AgeI ACCGGT 1 cut(s) 520
AjiI CACGTC 1 cut(s) 436
AjnI CCWGG 1 cut(s) 543
AluBI AGCT 4 cut(s) 59, 181, 283, 361
AluI AGCT 4 cut(s) 59, 181, 283, 361
Alw26I GTCTC 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 131
AoxI GGCC 2 cut(s) 218, 251
ApaI GGGCCC 1 cut(s) 255
ApeKI GCWGC 2 cut(s) 101, 104
ApoI RAATTY 2 cut(s) 272, 442
AseI ATTAAT 1 cut(s) 486
AsiGI ACCGGT 1 cut(s) 520
AspS9I GGNCC 4 cut(s) 134, 218, 251, 252
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 2 cut(s) 238, 355
AvaII GGWCC 1 cut(s) 134
AxyI CCTNAGG 1 cut(s) 294
BaeGI GKGCMC 1 cut(s) 255
BanII GRGCYC 1 cut(s) 255
BauI CACGAG 1 cut(s) 35
BbvI GCAGC 2 cut(s) 88, 91
BciT130I CCWGG 1 cut(s) 545
BclI TGATCA 1 cut(s) 496
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 514
BisI GCNGC 3 cut(s) 14, 102, 105
BlsI GCNGC 3 cut(s) 15, 103, 106
Bme1390I CCNGG 2 cut(s) 250, 545
Bme18I GGWCC 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 436
BmgT120I GGNCC 4 cut(s) 134, 218, 251, 252
BmiI GGNNCC 2 cut(s) 253, 387
BmrFI CCNGG 2 cut(s) 250, 545
BplI GAGNNNNNCTC 2 cut(s) 316, 348
BpmI CTGGAG 1 cut(s) 527
BpuMI CCSGG 1 cut(s) 250
BsaJI CCNNGG 2 cut(s) 255, 366
BsaWI WCCGGW 2 cut(s) 131, 520
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 544
Bse118I RCCGGY 1 cut(s) 520
Bse1I ACTGG 1 cut(s) 124
Bse21I CCTNAGG 1 cut(s) 294
BseAI TCCGGA 1 cut(s) 131
BseBI CCWGG 1 cut(s) 545
BseDI CCNNGG 2 cut(s) 255, 366
BseLI CCNNNNNNNGG 2 cut(s) 295, 544
BseMII CTCAG 4 cut(s) 81, 212, 285, 546
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 3 cut(s) 35, 324, 383
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 2 cut(s) 88, 91
BshFI GGCC 2 cut(s) 220, 253
BshTI ACCGGT 1 cut(s) 520
BsiSI CCGG 3 cut(s) 132, 249, 521
BslI CCNNNNNNNGG 2 cut(s) 295, 544
BsmAI GTCTC 1 cut(s) 12
BsnI GGCC 2 cut(s) 220, 253
Bsp120I GGGCCC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 255
Bsp13I TCCGGA 1 cut(s) 131
Bsp143I GATC 2 cut(s) 415, 496
Bsp19I CCATGG 1 cut(s) 255
BspACI CCGC 2 cut(s) 14, 407
BspANI GGCC 2 cut(s) 220, 253
BspCNI CTCAG 4 cut(s) 82, 211, 286, 547
BspEI TCCGGA 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 253, 387
BsrFI RCCGGY 1 cut(s) 520
BsrI ACTGG 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 520
BssECI CCNNGG 2 cut(s) 255, 366
BssMI GATC 2 cut(s) 415, 496
BssSI CACGAG 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 255
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 545
BstDEI CTNAG 6 cut(s) 90, 198, 262, 294, 308, 555
BstDSI CCRYGG 1 cut(s) 255
BstKTI GATC 2 cut(s) 418, 499
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 2 cut(s) 415, 496
BstNI CCWGG 1 cut(s) 545
BstSCI CCNGG 2 cut(s) 248, 543
BstSFI CTRYAG 1 cut(s) 514
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 88, 91
Bsu36I CCTNAGG 1 cut(s) 294
BsuRI GGCC 2 cut(s) 220, 253
BtgI CCRYGG 1 cut(s) 255
BtrI CACGTC 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 117
Cfr10I RCCGGY 1 cut(s) 520
Cfr13I GGNCC 4 cut(s) 134, 218, 251, 252
Csp6I GTAC 1 cut(s) 202
CspAI ACCGGT 1 cut(s) 520
CviAII CATG 5 cut(s) 49, 76, 256, 419, 502
CviJI RGCY 8 cut(s) 41, 59, 181, 220, 253, 266, 283, 361
CviKI_1 RGCY 8 cut(s) 41, 59, 181, 220, 253, 266, 283, 361
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 6 cut(s) 90, 198, 262, 294, 308, 555
DpnI GATC 2 cut(s) 417, 498
DpnII GATC 2 cut(s) 415, 496
EciI GGCGGA 1 cut(s) 422
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 134
Eco81I CCTNAGG 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 543
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 5 cut(s) 52, 79, 259, 422, 505
FatI CATG 5 cut(s) 48, 75, 255, 418, 501
FbaI TGATCA 1 cut(s) 496
FblI GTMKAC 1 cut(s) 517
Fnu4HI GCNGC 3 cut(s) 14, 102, 105
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 3 cut(s) 14, 102, 105
GluI GCNGC 3 cut(s) 14, 102, 105
GsuI CTGGAG 1 cut(s) 527
HaeIII GGCC 2 cut(s) 220, 253
HapII CCGG 3 cut(s) 132, 249, 521
Hin1II CATG 5 cut(s) 52, 79, 259, 422, 505
HinfI GANTC 1 cut(s) 194
HpaII CCGG 3 cut(s) 132, 249, 521
HphI GGTGA 2 cut(s) 238, 355
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 1 cut(s) 496
Hpy188III TCNNGA 2 cut(s) 89, 132
Hpy8I GTNNAC 1 cut(s) 518
HpyAV CCTTC 1 cut(s) 250
HpyCH4IV ACGT 2 cut(s) 236, 435
HpyCH4V TGCA 3 cut(s) 233, 422, 439
HpyF3I CTNAG 6 cut(s) 90, 198, 262, 294, 308, 555
HpySE526I ACGT 2 cut(s) 236, 435
Hsp92II CATG 5 cut(s) 52, 79, 259, 422, 505
Kpn2I TCCGGA 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 2 cut(s) 415, 496
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 2 cut(s) 88, 91
MaeII ACGT 2 cut(s) 236, 435
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 417, 498
MboI GATC 2 cut(s) 415, 496
MboII GAAGA 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 4 cut(s) 145, 272, 343, 442
MlyI GAGTC 1 cut(s) 188
MroI TCCGGA 1 cut(s) 131
MseI TTAA 4 cut(s) 171, 302, 486, 568
MslI CAYNNNNRTG 1 cut(s) 506
MspI CCGG 3 cut(s) 132, 249, 521
MspR9I CCNGG 2 cut(s) 250, 545
MvaI CCWGG 1 cut(s) 545
NciI CCSGG 1 cut(s) 250
NcoI CCATGG 1 cut(s) 255
NdeII GATC 2 cut(s) 415, 496
NlaIII CATG 5 cut(s) 52, 79, 259, 422, 505
NlaIV GGNNCC 2 cut(s) 253, 387
NmuCI GTSAC 1 cut(s) 115
PfoI TCCNGGA 1 cut(s) 543
PinAI ACCGGT 1 cut(s) 520
PkrI GCNGC 3 cut(s) 15, 103, 106
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PshBI ATTAAT 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 543
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 2 cut(s) 253, 387
PspOMI GGGCCC 1 cut(s) 251
PspPI GGNCC 4 cut(s) 134, 218, 251, 252
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 506
SaqAI TTAA 4 cut(s) 171, 302, 486, 568
SatI GCNGC 3 cut(s) 14, 102, 105
Sau3AI GATC 2 cut(s) 415, 496
Sau96I GGNCC 4 cut(s) 134, 218, 251, 252
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 2 cut(s) 250, 545
SduI GDGCHC 1 cut(s) 255
SfcI CTRYAG 1 cut(s) 514
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 506
Sse9I AATT 4 cut(s) 145, 272, 343, 442
SsiI CCGC 2 cut(s) 14, 407
SspI AATATT 1 cut(s) 563
StyD4I CCNGG 2 cut(s) 248, 543
StyI CCWWGG 1 cut(s) 255
TaiI ACGT 2 cut(s) 239, 438
TasI AATT 4 cut(s) 145, 272, 343, 442
TatI WGTACW 1 cut(s) 201
TauI GCSGC 1 cut(s) 16
Tru1I TTAA 4 cut(s) 171, 302, 486, 568
Tru9I TTAA 4 cut(s) 171, 302, 486, 568
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 2 cut(s) 101, 104
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 3 cut(s) 64, 388, 486
TspRI CASTG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 134
VspI ATTAAT 1 cut(s) 486
XapI RAATTY 2 cut(s) 272, 442
XmiI GTMKAC 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.