Rmu_ssc0000417.1_g000011

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000417.1
OG0000171
Physical Location & Seq
Reverse (-)
68708 .. 70029
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000417.1_g000011.1.cds

Sequence Viewer

Length: 429 bp
atggcttctctaccaccgcacgaaatggttatcctggttagccacagcttgggtggaatccccatatctattgccatggagaccttccctcataaaattgctgctgcggtttttgccactgctgacatgcctgattactttatcattattaacaatggccaggacttaacactagagttgacattgttgagatttgcccctttgtttcatgaaaaaatactgagcaagaagaattatggatcagtttgtagagtatacatcaagtgcgatcaagatcagacaataaaagaggatctggcaaggctgatgatcaacgataatccaccagatgaagtcaaagtgattaatggctctgatcatatggtcatgttctccagaccgctagagctattctccagcctctaccagattgctcaaaattattcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

142

Amino Acids

15.98

Weight (kDa)

5.41

Isoelectric Point (pI)

28.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 49
AccI GTMKAC 1 cut(s) 255
AciI CCGC 3 cut(s) 17, 107, 380
AclWI GGATC 2 cut(s) 247, 300
AcoI YGGCCR 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 49
AjnI CCWGG 2 cut(s) 33, 159
AluBI AGCT 2 cut(s) 48, 388
AluI AGCT 2 cut(s) 48, 388
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 2 cut(s) 247, 300
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 101, 104
AseI ATTAAT 1 cut(s) 345
BalI TGGCCA 1 cut(s) 159
BbvI GCAGC 2 cut(s) 88, 91
BciT130I CCWGG 2 cut(s) 35, 161
BclI TGATCA 2 cut(s) 309, 355
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 2 cut(s) 173, 383
BisI GCNGC 2 cut(s) 102, 105
BlsI GCNGC 2 cut(s) 103, 106
Bme1390I CCNGG 2 cut(s) 35, 161
BmrFI CCNGG 2 cut(s) 35, 161
BplI GAGNNNNNCTC 2 cut(s) 377, 409
BpmI CTGGAG 2 cut(s) 358, 379
BsaBI GATNNNNATC 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 2 cut(s) 35, 161
BseDI CCNNGG 1 cut(s) 75
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 212
BseXI GCAGC 2 cut(s) 88, 91
BshFI GGCC 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 74
BsnI GGCC 1 cut(s) 159
Bso31I GGTCTC 1 cut(s) 74
Bsp143I GATC 6 cut(s) 239, 268, 274, 292, 309, 355
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 3 cut(s) 17, 107, 380
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 213
BspHI TCATGA 1 cut(s) 208
BspPI GGATC 2 cut(s) 247, 300
BspTNI GGTCTC 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 6 cut(s) 239, 268, 274, 292, 309, 355
BssNAI GTATAC 1 cut(s) 256
BssT1I CCWWGG 1 cut(s) 75
Bst1107I GTATAC 1 cut(s) 256
Bst2UI CCWGG 2 cut(s) 35, 161
BstDEI CTNAG 1 cut(s) 221
BstDSI CCRYGG 1 cut(s) 75
BstKTI GATC 6 cut(s) 242, 271, 277, 295, 312, 358
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 6 cut(s) 239, 268, 274, 292, 309, 355
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 2 cut(s) 35, 161
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 33, 159
BstV1I GCAGC 2 cut(s) 88, 91
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BstZ17I GTATAC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
CciI TCATGA 1 cut(s) 208
CviAII CATG 4 cut(s) 76, 127, 209, 367
CviJI RGCY 8 cut(s) 5, 42, 48, 159, 304, 351, 388, 399
CviKI_1 RGCY 8 cut(s) 5, 42, 48, 159, 304, 351, 388, 399
DdeI CTNAG 1 cut(s) 221
DpnI GATC 6 cut(s) 241, 270, 276, 294, 311, 357
DpnII GATC 6 cut(s) 239, 268, 274, 292, 309, 355
EaeI YGGCCR 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 74
EcoRII CCWGG 2 cut(s) 33, 159
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 4 cut(s) 79, 130, 212, 370
FatI CATG 4 cut(s) 75, 126, 208, 366
FauNDI CATATG 1 cut(s) 360
FbaI TGATCA 2 cut(s) 309, 355
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 2 cut(s) 102, 105
Fsp4HI GCNGC 2 cut(s) 102, 105
FspBI CTAG 2 cut(s) 173, 383
GluI GCNGC 2 cut(s) 102, 105
GsuI CTGGAG 2 cut(s) 358, 379
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 4 cut(s) 79, 130, 212, 370
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 1 cut(s) 57
Hpy166II GTNNAC 2 cut(s) 180, 256
Hpy188I TCNGA 2 cut(s) 279, 355
Hpy188III TCNNGA 3 cut(s) 209, 272, 375
Hpy8I GTNNAC 2 cut(s) 180, 256
HpyAV CCTTC 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 221
Hsp92II CATG 4 cut(s) 79, 130, 212, 370
Ksp22I TGATCA 2 cut(s) 309, 355
Kzo9I GATC 6 cut(s) 239, 268, 274, 292, 309, 355
Lsp1109I GCAGC 2 cut(s) 88, 91
MaeI CTAG 2 cut(s) 173, 383
MalI GATC 6 cut(s) 241, 270, 276, 294, 311, 357
MboI GATC 6 cut(s) 239, 268, 274, 292, 309, 355
MboII GAAGA 1 cut(s) 241
MflI RGATCY 1 cut(s) 292
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 3 cut(s) 96, 232, 418
MluNI TGGCCA 1 cut(s) 159
MnlI CCTC 3 cut(s) 99, 283, 410
Mox20I TGGCCA 1 cut(s) 159
MscI TGGCCA 1 cut(s) 159
MseI TTAA 4 cut(s) 150, 167, 345, 427
Msp20I TGGCCA 1 cut(s) 159
MspR9I CCNGG 2 cut(s) 35, 161
MvaI CCWGG 2 cut(s) 35, 161
MwoI GCNNNNNNNGC 1 cut(s) 113
NcoI CCATGG 1 cut(s) 75
NdeI CATATG 1 cut(s) 360
NdeII GATC 6 cut(s) 239, 268, 274, 292, 309, 355
NlaIII CATG 4 cut(s) 79, 130, 212, 370
NspI RCATGY 1 cut(s) 130
PagI TCATGA 1 cut(s) 208
PfeI GAWTC 1 cut(s) 57
PflMI CCANNNNNTGG 1 cut(s) 49
PkrI GCNGC 2 cut(s) 103, 106
PshBI ATTAAT 1 cut(s) 345
Psp6I CCWGG 2 cut(s) 33, 159
PspGI CCWGG 2 cut(s) 33, 159
PsuI RGATCY 1 cut(s) 292
SaqAI TTAA 4 cut(s) 150, 167, 345, 427
SatI GCNGC 2 cut(s) 102, 105
Sau3AI GATC 6 cut(s) 239, 268, 274, 292, 309, 355
ScrFI CCNGG 2 cut(s) 35, 161
SetI ASST 3 cut(s) 50, 86, 390
Sse9I AATT 3 cut(s) 96, 232, 418
SsiI CCGC 3 cut(s) 17, 107, 380
SspMI CTAG 2 cut(s) 173, 383
StyD4I CCNGG 2 cut(s) 33, 159
StyI CCWWGG 1 cut(s) 75
TasI AATT 3 cut(s) 96, 232, 418
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 4 cut(s) 150, 167, 345, 427
Tru9I TTAA 4 cut(s) 150, 167, 345, 427
TscAI CASTG 1 cut(s) 124
TseI GCWGC 2 cut(s) 101, 104
TspDTI ATGAA 3 cut(s) 197, 225, 345
TspRI CASTG 1 cut(s) 124
Van91I CCANNNNNTGG 1 cut(s) 49
VspI ATTAAT 1 cut(s) 345
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 2 cut(s) 173, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.