MD02G1163000.v1.1

salicylic acid-binding protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000171
Physical Location & Seq
Forward (+)
13869067 .. 13870449
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1163000.v1.1.491

Sequence Viewer

Length: 885 bp
ATGGAGAACATGATAGAAATGCTTCTTTTGCTTTTCCTTTTATTTATTTGCTTAGCAAAAGCTAGTACCTCAACGCCATCCCCGCTCCCCAACATTCACAACCAAACTCAAAGTCCAAAACATTTTGTGTTGATACATGGAGCTTGTCATGGAGCATGGAGCTGGTATAAGGTGGCCACTCTCTTGAAGGACTCAGGTCACCGTGTCACAGCTCTAGACTTGGGAGCATCCGGGATCAACCCGATTCAGGTAGAGCAACTCCCTTCGTTATCGGAATTTGTCGAGCCTTTGACAAAGCTCATGGTGTCTCTACCACCAAATGAAAAGGTTATCCTTGTGGCTCACAGCTATGGTGGTGCCGTCATATCTATTTTCATGGAGAGGTTCTCTCAGAAAATTTCTGCTGCGGTGTATGTCACAGCTATCATGTCTGGTCCTACTCTTAATTACTCAACTATATTTGCAGAGTTTGTTAAAACATTTGATTTTAAGGACTCTCGGTTCAGATATGATAAGGGGACCAGCAACCCTGCAACCTCCTTTATCCTTGGCCCTAAGGACATGGCGACAAGCTTGTACCAGCTCTCACCACCAGAGGATTTTACCCTAGGGTTGTCGTTGGTGAGATTTGCTCCTCTATACAATTGTGATGTAATAAAGCTCACGAAAGAGAAATATGGAACAGTTCCTAGAGTGTTCATCGTGTCCCACCAAGACCATACAGTAGTGTTGGATCTGCAAAAGTATATGATCAAGAACAATCCGCCAAATGAAGTGAAAGTGATAAACGGTTCTGATCACATGGTCATGCTCTCGAAACCCATGGAGTTGTTCATCCATCTCCAAAATATCGCTGAGAAATATCATAAACACAAGCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

295

Amino Acids

32.94

Weight (kDa)

8.6

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 41 - 274 6.7e-19 alpha/beta hydrolase fold
Hydrolase_4 PF12146 41 - 147 1e-08 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 42 - 278 8.6e-20 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000171)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04550 FvH4_1g14860 FvH4_1g14860 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14870 FvH4_1g14880 FvH4_1g14881 FvH4_1g14881 FvH4_1g14891 FvH4_1g14891 FvH4_1g14891 FvH4_1g14900 FvH4_1g14900 FvH4_1g14920 FvH4_1g14930 FvH4_1g14930 FvH4_1g14930 FvH4_1g14940 FvH4_1g15260 FvH4_1g15260
malus_domestica MD00G1067600.v1.1 MD02G1091500.v1.1 MD02G1161800.v1.1 MD02G1161900.v1.1 MD02G1162000.v1.1 MD02G1162200.v1.1 MD02G1162300.v1.1 MD02G1162800.v1.1 MD02G1162900.v1.1 MD02G1163000.v1.1 MD03G1273700.v1.1
prunus_persica Prupe.7G141000_v2.0.a1 Prupe.7G141100_v2.0.a1 Prupe.7G141200_v2.0.a1 Prupe.7G141300_v2.0.a1 Prupe.7G141400_v2.0.a1 Prupe.7G141500_v2.0.a1 Prupe.7G141700_v2.0.a1
pyrus_communis pycom02g12780 pycom02g12790 pycom02g12830 pycom02g12840 pycom02g12870 pycom02g12910 pycom02g12920
rosa_chinensis RchiOBHm_Chr1g0329911 RchiOBHm_Chr1g0329921 RchiOBHm_Chr1g0329951 RchiOBHm_Chr1g0329961 RchiOBHm_Chr2g0103821 RchiOBHm_Chr2g0103831 RchiOBHm_Chr2g0103841 RchiOBHm_Chr2g0103851 RchiOBHm_Chr2g0103861 RchiOBHm_Chr2g0103871 RchiOBHm_Chr2g0103881 RchiOBHm_Chr2g0103951 RchiOBHm_Chr2g0104521
rosa_laevigata RLG00000017266 RLG00000017268 RLG00000017273 RLG00000017333 RLG00000029851 RLG00000029853
rosa_multiflora Rmu_sc0000112.1_g000007 Rmu_sc0000112.1_g000008 Rmu_sc0000112.1_g000021 Rmu_sc0001085.1_g000004 Rmu_sc0001085.1_g000007 Rmu_sc0001085.1_g000008 Rmu_sc0002081.1_g000009 Rmu_sc0002081.1_g000013 Rmu_sc0002316.1_g000050 Rmu_sc0006774.1_g000012 Rmu_sc0009241.1_g000003 Rmu_sc0013732.1_g000001 Rmu_sc0014704.1_g000001 Rmu_sc0030697.1_g000001 Rmu_ssc0000417.1_g000001 Rmu_ssc0000417.1_g000003 Rmu_ssc0000417.1_g000011 Rmu_ssc0000417.1_g000012
rosa_roxburghii Rroxscaffold_2G00138950 Rroxscaffold_2G00139230 Rroxscaffold_2G00139240 Rroxscaffold_2G00139270 Rroxscaffold_2G00139280 Rroxscaffold_2G00139320 Rroxscaffold_2G00139330 Rroxscaffold_4G00320470 Rroxscaffold_4G00320480 Rroxscaffold_4G00320500 Rroxscaffold_4G00320510
rosa_rugosa Rorug01G0084300 Rorug01G0084400.1 Rorug01G0084500 Rorug01G0084600 Rorug01G0084900 Rorug02G0117500 Rorug02G0117800 Rorug02G0117900 Rorug02G0118000 Rorug02G0118100 Rorug02G0118200 Rorug02G0118300
rosa_samantha Rh1AG102200 Rh1AG102300 Rh1AG103000 Rh1AG103300 Rh1BG081400 Rh1BG081500 Rh1BG081600 Rh1BG081700 Rh1CG097200 Rh1CG097300 Rh1CG097700 Rh1CG097800 Rh1CG098100 Rh1CG098400 Rh1DG104800 Rh1DG104900 Rh1DG105600 Rh2AG166600 Rh2AG166700 Rh2AG166800 Rh2AG167100 Rh2AG167300 Rh2AG167400 Rh2AG167500 Rh2AG167600 Rh2BG173700 Rh2BG173800 Rh2BG173900 Rh2BG174000 Rh2BG174300 Rh2BG174400 Rh2BG174500 Rh2BG174700 Rh2CG172500 Rh2CG172600 Rh2CG172800 Rh2CG172900 Rh2CG173000 Rh2CG173100 Rh2CG173200 Rh2CG173300 Rh2CG176000 Rh2DG171900 Rh2DG172000 Rh2DG172100 Rh2DG172300 Rh2DG172700 Rh2DG172800 Rh2DG172900 Rh2DG173000
rosa_wichuraiana Rw0G002040 Rw0G006890 Rw1G008090 Rw1G008100 Rw1G008140 Rw1G008150 Rw1G008200 Rw1G008300 Rw2G013050 Rw2G013060 Rw2G013080 Rw2G013090 Rw2G013100 Rw2G013390 Rw5G012310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 356
AccBSI CCGCTC 1 cut(s) 85
AciI CCGC 3 cut(s) 83, 407, 764
AclWI GGATC 2 cut(s) 242, 741
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 2 cut(s) 275, 396
AfaI GTAC 2 cut(s) 67, 578
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 1 cut(s) 187
AloI GAACNNNNNNTCC 2 cut(s) 485, 517
Alw26I GTCTC 1 cut(s) 312
AlwI GGATC 2 cut(s) 242, 741
AoxI GGCC 2 cut(s) 174, 550
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 2 cut(s) 275, 396
ArsI GACNNNNNNTTYG 2 cut(s) 97, 129
Asp700I GAANNNNTTC 1 cut(s) 21
AspA2I CCTAGG 1 cut(s) 607
AspS9I GGNCC 3 cut(s) 434, 519, 551
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 3 cut(s) 191, 579, 634
AvaII GGWCC 2 cut(s) 434, 519
AvrII CCTAGG 1 cut(s) 607
AxyI CCTNAGG 1 cut(s) 555
BalI TGGCCA 1 cut(s) 176
BanI GGYRCC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 391
BccI CCATC 2 cut(s) 85, 846
BceAI ACGGC 1 cut(s) 344
BclI TGATCA 2 cut(s) 750, 796
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 4 cut(s) 63, 215, 608, 690
BisI GCNGC 1 cut(s) 405
BlnI CCTAGG 1 cut(s) 607
BlpI GCTNAGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 406
Bme1390I CCNGG 1 cut(s) 232
Bme18I GGWCC 2 cut(s) 434, 519
BmgT120I GGNCC 3 cut(s) 434, 519, 551
BmiI GGNNCC 2 cut(s) 358, 520
BmrFI CCNGG 1 cut(s) 232
BmsI GCATC 1 cut(s) 236
BoxI GACNNNNGTC 1 cut(s) 195
BplI GAGNNNNNCTC 6 cut(s) 371, 403, 373, 405, 616, 648
Bpu1102I GCTNAGC 1 cut(s) 52
BpuMI CCSGG 1 cut(s) 232
BsaJI CCNNGG 3 cut(s) 547, 607, 822
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse21I CCTNAGG 1 cut(s) 555
BseDI CCNNGG 3 cut(s) 547, 607, 822
BseGI GGATG 3 cut(s) 77, 227, 834
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMII CTCAG 3 cut(s) 207, 404, 846
BseRI GAGGAG 1 cut(s) 624
BseXI GCAGC 1 cut(s) 391
BshFI GGCC 2 cut(s) 176, 552
BshNI GGYRCC 1 cut(s) 356
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 2 cut(s) 532, 691
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 312
BsmFI GGGAC 2 cut(s) 532, 691
BsnI GGCC 2 cut(s) 176, 552
Bsp143I GATC 4 cut(s) 234, 733, 750, 796
Bsp1720I GCTNAGC 1 cut(s) 52
Bsp19I CCATGG 1 cut(s) 822
BspACI CCGC 3 cut(s) 83, 407, 764
BspANI GGCC 2 cut(s) 176, 552
BspCNI CTCAG 3 cut(s) 206, 403, 847
BspLI GGNNCC 2 cut(s) 358, 520
BspPI GGATC 2 cut(s) 242, 741
BspT107I GGYRCC 1 cut(s) 356
BsrBI CCGCTC 1 cut(s) 85
BssECI CCNNGG 3 cut(s) 547, 607, 822
BssMI GATC 4 cut(s) 234, 733, 750, 796
BssT1I CCWWGG 3 cut(s) 547, 607, 822
Bst4CI ACNGT 4 cut(s) 203, 685, 724, 791
BstDEI CTNAG 5 cut(s) 52, 193, 390, 555, 855
BstDSI CCRYGG 1 cut(s) 822
BstEII GGTNACC 1 cut(s) 197
BstF5I GGATG 3 cut(s) 77, 227, 834
BstKTI GATC 4 cut(s) 237, 736, 753, 799
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 4 cut(s) 234, 733, 750, 796
BstMWI GCNNNNNNNGC 2 cut(s) 28, 82
BstPAI GACNNNNGTC 1 cut(s) 195
BstPI GGTNACC 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 733
BstYI RGATCY 1 cut(s) 733
Bsu36I CCTNAGG 1 cut(s) 555
BsuRI GGCC 2 cut(s) 176, 552
BtgI CCRYGG 1 cut(s) 822
BtsCI GGATG 3 cut(s) 77, 227, 834
Cfr13I GGNCC 3 cut(s) 434, 519, 551
Csp6I GTAC 2 cut(s) 66, 577
CviQI GTAC 2 cut(s) 66, 577
DdeI CTNAG 5 cut(s) 52, 193, 390, 555, 855
DpnI GATC 4 cut(s) 236, 735, 752, 798
DpnII GATC 4 cut(s) 234, 733, 750, 796
EaeI YGGCCR 1 cut(s) 174
EciI GGCGGA 1 cut(s) 753
Eco130I CCWWGG 3 cut(s) 547, 607, 822
Eco47I GGWCC 2 cut(s) 434, 519
Eco81I CCTNAGG 1 cut(s) 555
Eco91I GGTNACC 1 cut(s) 197
EcoO65I GGTNACC 1 cut(s) 197
EcoT14I CCWWGG 3 cut(s) 547, 607, 822
ErhI CCWWGG 3 cut(s) 547, 607, 822
FaqI GGGAC 2 cut(s) 532, 691
FauI CCCGC 1 cut(s) 90
FbaI TGATCA 2 cut(s) 750, 796
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 3 cut(s) 64, 214, 821
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 4 cut(s) 63, 215, 608, 690
GluI GCNGC 1 cut(s) 405
HaeIII GGCC 2 cut(s) 176, 552
HapII CCGG 1 cut(s) 231
HindIII AAGCTT 1 cut(s) 571
HinfI GANTC 3 cut(s) 191, 244, 494
HpaII CCGG 1 cut(s) 231
HphI GGTGA 3 cut(s) 191, 579, 634
Hpy188I TCNGA 4 cut(s) 274, 393, 506, 796
Hpy188III TCNNGA 5 cut(s) 184, 215, 664, 754, 814
HpyAV CCTTC 2 cut(s) 181, 273
HpyCH4III ACNGT 4 cut(s) 203, 685, 724, 791
HpyCH4V TGCA 3 cut(s) 464, 533, 739
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 82
HpyF3I CTNAG 5 cut(s) 52, 193, 390, 555, 855
Ksp22I TGATCA 2 cut(s) 750, 796
Kzo9I GATC 4 cut(s) 234, 733, 750, 796
LmnI GCTCC 6 cut(s) 90, 140, 152, 159, 224, 637
LpnPI CCDG 9 cut(s) 148, 180, 233, 244, 417, 535, 543, 593, 606
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 1 cut(s) 236
MaeI CTAG 4 cut(s) 63, 215, 608, 690
MaeIII GTNAC 3 cut(s) 197, 205, 415
MalI GATC 4 cut(s) 236, 735, 752, 798
MbiI CCGCTC 1 cut(s) 85
MboI GATC 4 cut(s) 234, 733, 750, 796
MfeI CAATTG 1 cut(s) 643
MflI RGATCY 1 cut(s) 733
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 4 cut(s) 275, 396, 445, 643
MluNI TGGCCA 1 cut(s) 176
MlyI GAGTC 2 cut(s) 185, 488
MmeI TCCRAC 1 cut(s) 711
MnlI CCTC 5 cut(s) 79, 375, 547, 589, 645
Mox20I TGGCCA 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 21
MscI TGGCCA 1 cut(s) 176
MseI TTAA 4 cut(s) 444, 474, 489, 883
MslI CAYNNNNRTG 3 cut(s) 348, 806, 876
Msp20I TGGCCA 1 cut(s) 176
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 232
MunI CAATTG 1 cut(s) 643
MwoI GCNNNNNNNGC 2 cut(s) 28, 82
NciI CCSGG 1 cut(s) 232
NcoI CCATGG 1 cut(s) 822
NdeII GATC 4 cut(s) 234, 733, 750, 796
NlaIV GGNNCC 2 cut(s) 358, 520
NmuCI GTSAC 3 cut(s) 197, 205, 415
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 244
PfoI TCCNGGA 1 cut(s) 230
PkrI GCNGC 1 cut(s) 406
PleI GAGTC 2 cut(s) 185, 488
PpsI GAGTC 2 cut(s) 185, 488
PshAI GACNNNNGTC 1 cut(s) 195
PspEI GGTNACC 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 358, 520
PspPI GGNCC 3 cut(s) 434, 519, 551
PsuI RGATCY 1 cut(s) 733
RsaI GTAC 2 cut(s) 67, 578
RsaNI GTAC 2 cut(s) 66, 577
RseI CAYNNNNRTG 3 cut(s) 348, 806, 876
SaqAI TTAA 4 cut(s) 444, 474, 489, 883
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 4 cut(s) 234, 733, 750, 796
Sau96I GGNCC 3 cut(s) 434, 519, 551
SchI GAGTC 2 cut(s) 185, 488
ScrFI CCNGG 1 cut(s) 232
SfaNI GCATC 1 cut(s) 236
SinI GGWCC 2 cut(s) 434, 519
SmiMI CAYNNNNRTG 3 cut(s) 348, 806, 876
Sse9I AATT 4 cut(s) 275, 396, 445, 643
SsiI CCGC 3 cut(s) 83, 407, 764
SspMI CTAG 4 cut(s) 63, 215, 608, 690
StyD4I CCNGG 1 cut(s) 230
StyI CCWWGG 3 cut(s) 547, 607, 822
TaaI ACNGT 4 cut(s) 203, 685, 724, 791
TaqI TCGA 2 cut(s) 282, 815
TasI AATT 4 cut(s) 275, 396, 445, 643
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 4 cut(s) 444, 474, 489, 883
Tru9I TTAA 4 cut(s) 444, 474, 489, 883
TseFI GTSAC 3 cut(s) 197, 205, 415
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 3 cut(s) 197, 205, 415
TspDTI ATGAA 5 cut(s) 336, 364, 688, 786, 823
VpaK11BI GGWCC 2 cut(s) 434, 519
XapI RAATTY 2 cut(s) 275, 396
XbaI TCTAGA 1 cut(s) 214
XmaJI CCTAGG 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 4 cut(s) 63, 215, 608, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.