FvH4_2g35201

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000298
Physical Location & Seq
Reverse (-)
25994883 .. 25996437
1555 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35201.t1

Sequence Viewer

Length: 1350 bp
ATGAGTAGATTGATACAAGTTCATAGCTGGTATTCAGTTGCAGCAGCCAACAAAAACAAACCACCCAAAATGCCGATTTCAAAGAGCAATCAAGGCAAACGCTCCCGGAATCATCCAAGACAACCCCAAGCACCACCGATCCGGCAAGAGAAATGGGAACCAGACGGACCTTGCTTCATCCAACACCTTCCAAAGGATTTACTCATTGAGATACTCTCATGGCTCCCAGCCAAGACCATCCTGACTTGTAAGTTTGTCTGCAAAACCTGGCTTTTAGTAATTTCTGAACCCCGTTTTATAAGTCTGCACCATTCAAGATCTGCGGCTGGGATCTTGATCCAGGTCTGGGGTAGTCCAAGAAATAGAAATTTTGCTAGGAGACTGCTTTTCACTCAGGTAGATAAGTGTGCTGGTGATTCTGATAATTTGGTCATGGAAAAAATGACCTTCACTACTAAGAACACTGCACCCGTTAATGTATTTGAAGTGGCAAACTCCTGCAACGGTTTCATTTGTTTGTGCGGTACACAAGTGAGCAGTATGATTGTATGTAATCCTCTTCTGAACGAGTACATTACCGTTCTTACTACTAATAATAACAAATTGGGAAATTTGGGTGGACTTGGTTGGAGTTCAGTGACAAATGAATACAAGTTGCTGCGAACATTTTATCGAGCACCCGGTGAAAGGAATACCCTTGAGGCTGAGGTTTACACTATCGGTTCAGGAGTTTGGAGGAGTATTGGAAAGGCTCCTACTGACAGGGTTGTGTTACCCTTCAATGCTTTTCTGCATGGAGTTCTTCATTTCGCTCCTGTCTATTCTACTGGTTCTCGCTTAATACATTGCTTTGATTTTGAAAGAGAACAGTTTCGAGCACTGCCGCCGCCCTCAAGTGATCAGCTGAAGTTGAAGTTTAACATAGGTAGCGTAACTTTGGGAGTGTGGGAGACTTGTCTCACATATTGTGTGTCTGATGTTGATGCCACCAAATTTGAGTTGTGGACTATGAAGGAGTATGGGGTTGGGGAGTCTTGGACAAAAGCTCTCGTCATAGAGAACGTGTACCCAAGGGAGTTTTTAGCTGATAGTTACGAACCGATTTTGTTCTTGGCTGATGGGGAAATTTTAATGGTCTATAATGATCGGATTATAGTTCGTTATAATCCGAAAACAAAAACATTCAAAAAAACCAAAATTATTCAGACTCGACTCAACTCATTTCAGTCGGTTGCATATAGTCCCTGCTTTGAATCACTTCTCAGGTCTTTTAAAGGAGAGGAGGTCAGGAACATGAGAGGACAGGAAAACAAGCTCTTTGGTAGAGAAGTGCATGATTCTGCTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

450

Amino Acids

51.01

Weight (kDa)

9.25

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 60 - 99 1.2e-08 F-box domain
F-box-like PF12937 60 - 97 3.4e-08 F-box-like
FBA_3 PF08268 144 - 408 4.3e-22 F-box associated beta propeller domain
FBA_1 PF07734 150 - 384 5.7e-24 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 299, 1164
AciI CCGC 4 cut(s) 323, 522, 884, 887
AclWI GGATC 3 cut(s) 133, 331, 338
AcsI RAATTY 4 cut(s) 367, 610, 992, 1125
AcuI CTGAAG 1 cut(s) 926
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 3 cut(s) 526, 572, 1067
AfiI CCNNNNNNNGG 3 cut(s) 193, 346, 687
AflIII ACRYGT 1 cut(s) 1062
AgsI TTSAA 8 cut(s) 81, 315, 485, 781, 860, 913, 1186, 1253
AjnI CCWGG 2 cut(s) 266, 339
AluBI AGCT 5 cut(s) 27, 904, 1046, 1085, 1315
AluI AGCT 5 cut(s) 27, 904, 1046, 1085, 1315
Alw21I GWGCWC 2 cut(s) 679, 880
Alw26I GTCTC 3 cut(s) 373, 944, 962
AlwI GGATC 3 cut(s) 133, 331, 338
ApeKI GCWGC 3 cut(s) 41, 44, 658
ApoI RAATTY 4 cut(s) 367, 610, 992, 1125
Asp700I GAANNNNTTC 2 cut(s) 870, 1257
AspS9I GGNCC 1 cut(s) 167
AsuC2I CCSGG 2 cut(s) 106, 681
AsuHPI GGTGA 2 cut(s) 425, 695
AvaII GGWCC 1 cut(s) 167
BaeI ACNNNNGTAYC 2 cut(s) 516, 549
Bbv12I GWGCWC 2 cut(s) 679, 880
BbvCI CCTCAGC 1 cut(s) 705
BbvI GCAGC 3 cut(s) 53, 56, 645
BccI CCATC 2 cut(s) 245, 1112
BciT130I CCWGG 2 cut(s) 268, 341
BclI TGATCA 1 cut(s) 898
BcnI CCSGG 2 cut(s) 106, 681
BcoDI GTCTC 3 cut(s) 373, 944, 962
BfaI CTAG 1 cut(s) 375
BglII AGATCT 1 cut(s) 317
BisI GCNGC 6 cut(s) 42, 45, 324, 659, 884, 887
BlsI GCNGC 6 cut(s) 43, 46, 325, 660, 885, 888
Bme1390I CCNGG 4 cut(s) 106, 268, 341, 681
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 3 cut(s) 159, 224, 753
BmrFI CCNGG 4 cut(s) 106, 268, 341, 681
BmsI GCATC 1 cut(s) 973
BplI GAGNNNNNCTC 2 cut(s) 200, 232
Bpu10I CCTNAGC 1 cut(s) 705
BpuEI CTTGAG 2 cut(s) 719, 877
BpuMI CCSGG 2 cut(s) 106, 681
BsaBI GATNNNNATC 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 1070
BsaXI ACNNNNNCTCC 2 cut(s) 1269, 1299
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 346, 687
Bse1I ACTGG 1 cut(s) 832
Bse3DI GCAATG 1 cut(s) 844
Bse8I GATNNNNATC 1 cut(s) 335
BseBI CCWGG 2 cut(s) 268, 341
BseDI CCNNGG 1 cut(s) 1070
BseGI GGATG 3 cut(s) 112, 177, 237
BseJI GATNNNNATC 1 cut(s) 335
BseLI CCNNNNNNNGG 3 cut(s) 193, 346, 687
BseMI GCAATG 1 cut(s) 844
BseMII CTCAG 3 cut(s) 407, 696, 1276
BseNI ACTGG 1 cut(s) 832
BseRI GAGGAG 2 cut(s) 751, 1295
BseXI GCAGC 3 cut(s) 53, 56, 645
BseYI CCCAGC 2 cut(s) 226, 326
BsgI GTGCAG 2 cut(s) 290, 450
BsiHKAI GWGCWC 2 cut(s) 679, 880
BsiSI CCGG 3 cut(s) 106, 142, 681
BslFI GGGAC 1 cut(s) 1227
BslI CCNNNNNNNGG 3 cut(s) 193, 346, 687
BsmAI GTCTC 3 cut(s) 373, 944, 962
BsmFI GGGAC 1 cut(s) 1227
Bsp1286I GDGCHC 2 cut(s) 679, 880
Bsp143I GATC 6 cut(s) 138, 317, 330, 336, 898, 1144
BspACI CCGC 4 cut(s) 323, 522, 884, 887
BspCNI CTCAG 3 cut(s) 406, 697, 1275
BspLI GGNNCC 3 cut(s) 159, 224, 753
BspPI GGATC 3 cut(s) 133, 331, 338
BsrDI GCAATG 1 cut(s) 844
BsrI ACTGG 1 cut(s) 832
BssECI CCNNGG 1 cut(s) 1070
BssMI GATC 6 cut(s) 138, 317, 330, 336, 898, 1144
BssT1I CCWWGG 1 cut(s) 1070
Bst2UI CCWGG 2 cut(s) 268, 341
Bst4CI ACNGT 3 cut(s) 506, 580, 870
Bst6I CTCTTC 1 cut(s) 564
BstC8I GCNNGC 1 cut(s) 1345
BstDEI CTNAG 4 cut(s) 393, 456, 705, 1262
BstENI CCTNNNNNAGG 1 cut(s) 191
BstF5I GGATG 3 cut(s) 112, 177, 237
BstKTI GATC 6 cut(s) 141, 320, 333, 339, 901, 1147
BstMAI GTCTC 3 cut(s) 373, 944, 962
BstMBI GATC 6 cut(s) 138, 317, 330, 336, 898, 1144
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstNI CCWGG 2 cut(s) 268, 341
BstSCI CCNGG 4 cut(s) 104, 266, 339, 679
BstV1I GCAGC 3 cut(s) 53, 56, 645
BstX2I RGATCY 2 cut(s) 317, 330
BstYI RGATCY 2 cut(s) 317, 330
BtsCI GGATG 3 cut(s) 112, 177, 237
BtsI GCAGTG 2 cut(s) 462, 878
BtsIMutI CAGTG 3 cut(s) 462, 642, 878
Cac8I GCNNGC 1 cut(s) 1345
Cfr13I GGNCC 1 cut(s) 167
Csp6I GTAC 3 cut(s) 525, 571, 1066
CspCI CAANNNNNGTGG 2 cut(s) 976, 1011
CviAII CATG 5 cut(s) 219, 433, 794, 1294, 1334
CviQI GTAC 3 cut(s) 525, 571, 1066
DdeI CTNAG 4 cut(s) 393, 456, 705, 1262
DpnI GATC 6 cut(s) 140, 319, 332, 338, 900, 1146
DpnII GATC 6 cut(s) 138, 317, 330, 336, 898, 1144
DraI TTTAAA 1 cut(s) 1273
DraIII CACNNNGTG 1 cut(s) 683
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Eco130I CCWWGG 1 cut(s) 1070
Eco47I GGWCC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 926
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 266, 339
EcoT14I CCWWGG 1 cut(s) 1070
ErhI CCWWGG 1 cut(s) 1070
FaeI CATG 5 cut(s) 222, 436, 797, 1297, 1337
FaqI GGGAC 1 cut(s) 1227
FatI CATG 5 cut(s) 218, 432, 793, 1293, 1333
FbaI TGATCA 1 cut(s) 898
Fnu4HI GCNGC 6 cut(s) 42, 45, 324, 659, 884, 887
FokI GGATG 3 cut(s) 99, 164, 224
Fsp4HI GCNGC 6 cut(s) 42, 45, 324, 659, 884, 887
FspBI CTAG 1 cut(s) 375
GluI GCNGC 6 cut(s) 42, 45, 324, 659, 884, 887
GsaI CCCAGC 2 cut(s) 230, 330
HapII CCGG 3 cut(s) 106, 142, 681
Hin1II CATG 5 cut(s) 222, 436, 797, 1297, 1337
HinfI GANTC 7 cut(s) 109, 416, 1031, 1207, 1212, 1253, 1337
HpaII CCGG 3 cut(s) 106, 142, 681
HphI GGTGA 2 cut(s) 425, 695
Hpy166II GTNNAC 5 cut(s) 527, 620, 712, 1005, 1066
Hpy188I TCNGA 7 cut(s) 286, 421, 564, 976, 1149, 1170, 1206
Hpy188III TCNNGA 5 cut(s) 241, 315, 334, 726, 1288
Hpy8I GTNNAC 5 cut(s) 527, 620, 712, 1005, 1066
HpyAV CCTTC 4 cut(s) 197, 457, 787, 1006
HpyCH4III ACNGT 3 cut(s) 506, 580, 870
HpyCH4IV ACGT 1 cut(s) 1062
HpyCH4V TGCA 8 cut(s) 41, 261, 307, 467, 501, 793, 1235, 1333
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpyF3I CTNAG 4 cut(s) 393, 456, 705, 1262
HpySE526I ACGT 1 cut(s) 1062
Hsp92II CATG 5 cut(s) 222, 436, 797, 1297, 1337
Ksp22I TGATCA 1 cut(s) 898
Kzo9I GATC 6 cut(s) 138, 317, 330, 336, 898, 1144
LmnI GCTCC 4 cut(s) 107, 228, 757, 817
Lsp1109I GCAGC 3 cut(s) 53, 56, 645
LweI GCATC 1 cut(s) 973
MaeI CTAG 1 cut(s) 375
MaeII ACGT 1 cut(s) 1062
MaeIII GTNAC 4 cut(s) 637, 771, 931, 1091
MalI GATC 6 cut(s) 140, 319, 332, 338, 900, 1146
MboI GATC 6 cut(s) 138, 317, 330, 336, 898, 1144
MboII GAAGA 2 cut(s) 551, 794
MflI RGATCY 2 cut(s) 317, 330
MhlI GDGCHC 2 cut(s) 679, 880
MluCI AATT 8 cut(s) 279, 367, 424, 602, 610, 992, 1125, 1197
MlyI GAGTC 3 cut(s) 1040, 1201, 1206
MmeI TCCRAC 2 cut(s) 205, 608
MnlI CCTC 8 cut(s) 567, 694, 700, 729, 901, 1273, 1276, 1292
MroXI GAANNNNTTC 2 cut(s) 870, 1257
MseI TTAA 5 cut(s) 474, 839, 918, 1130, 1272
MspA1I CMGCKG 1 cut(s) 904
MspI CCGG 3 cut(s) 106, 142, 681
MspR9I CCNGG 4 cut(s) 106, 268, 341, 681
MvaI CCWGG 2 cut(s) 268, 341
MwoI GCNNNNNNNGC 1 cut(s) 93
NciI CCSGG 2 cut(s) 106, 681
NdeII GATC 6 cut(s) 138, 317, 330, 336, 898, 1144
NlaIII CATG 5 cut(s) 222, 436, 797, 1297, 1337
NlaIV GGNNCC 3 cut(s) 159, 224, 753
NmuCI GTSAC 1 cut(s) 637
PdmI GAANNNNTTC 2 cut(s) 870, 1257
PfeI GAWTC 4 cut(s) 109, 416, 1253, 1337
PfoI TCCNGGA 1 cut(s) 104
PkrI GCNGC 6 cut(s) 43, 46, 325, 660, 885, 888
PleI GAGTC 3 cut(s) 1039, 1201, 1206
PpsI GAGTC 3 cut(s) 1039, 1201, 1206
PsiI TTATAA 2 cut(s) 299, 1164
Psp6I CCWGG 2 cut(s) 266, 339
PspFI CCCAGC 2 cut(s) 226, 326
PspGI CCWGG 2 cut(s) 266, 339
PspN4I GGNNCC 3 cut(s) 159, 224, 753
PspPI GGNCC 1 cut(s) 167
PsuI RGATCY 2 cut(s) 317, 330
PvuII CAGCTG 1 cut(s) 904
RsaI GTAC 3 cut(s) 526, 572, 1067
RsaNI GTAC 3 cut(s) 525, 571, 1066
SaqAI TTAA 5 cut(s) 474, 839, 918, 1130, 1272
SatI GCNGC 6 cut(s) 42, 45, 324, 659, 884, 887
Sau3AI GATC 6 cut(s) 138, 317, 330, 336, 898, 1144
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 3 cut(s) 1040, 1201, 1206
ScrFI CCNGG 4 cut(s) 106, 268, 341, 681
SduI GDGCHC 2 cut(s) 679, 880
SfaNI GCATC 1 cut(s) 973
SinI GGWCC 1 cut(s) 167
SmlI CTYRAG 2 cut(s) 698, 892
SmoI CTYRAG 2 cut(s) 698, 892
Sse9I AATT 8 cut(s) 279, 367, 424, 602, 610, 992, 1125, 1197
SsiI CCGC 4 cut(s) 323, 522, 884, 887
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 4 cut(s) 104, 266, 339, 679
StyI CCWWGG 1 cut(s) 1070
TaaI ACNGT 3 cut(s) 506, 580, 870
TaiI ACGT 1 cut(s) 1065
TaqI TCGA 3 cut(s) 673, 874, 1210
TasI AATT 8 cut(s) 279, 367, 424, 602, 610, 992, 1125, 1197
TatI WGTACW 1 cut(s) 570
TauI GCSGC 3 cut(s) 326, 886, 889
TfiI GAWTC 4 cut(s) 109, 416, 1253, 1337
Tru1I TTAA 5 cut(s) 474, 839, 918, 1130, 1272
Tru9I TTAA 5 cut(s) 474, 839, 918, 1130, 1272
TscAI CASTG 3 cut(s) 469, 642, 885
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 3 cut(s) 41, 44, 658
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 6 cut(s) 11, 166, 499, 660, 794, 1025
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 3 cut(s) 469, 642, 885
VpaK11BI GGWCC 1 cut(s) 167
XagI CCTNNNNNAGG 1 cut(s) 191
XapI RAATTY 4 cut(s) 367, 610, 992, 1125
XmnI GAANNNNTTC 2 cut(s) 870, 1257
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.