Rh4BG225400

peptide-methionine (R)-S-oxide reductase activity

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
38929992 .. 38931180
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG225400.1

Sequence Viewer

Length: 411 bp
ATGTGGATTATGAAGGATTATGGTGTCCAAGAGTCTTGGACGAAAACTCTGGTTGTTGAAGGCTTGTATCTACCAACGGAACTTGCCAATGATGTTTATGAACCACTGGTGTTTTTGAGAAATGGGGACATCCTGTTGTGCTACAATGACTGGATTGTGGTTTGTTATAACCAAGGAACAAAGAGTCTCAGGGAAACTAGAGTTGCTCGGACTCGGTCACATTTTCGTGCAATTGGTTACAACCCATGCTTTTTCTCTCTCCATGATGTTGCAAAAGAAGTGGAGGTGAAAAGGGTAAGAGACAAAAAGAACTCCAAGAAGCCCTTTGGTGAAGGGAGTAGTGGTTGTGCCGATTCTGGCATCCCCCAGAAGTCCAAAAAACTTAACTCAGGCTCTGGATTGCCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.36

Weight (kDa)

9.06

Isoelectric Point (pI)

24.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AgsI TTSAA 1 cut(s) 59
Alw26I GTCTC 2 cut(s) 191, 294
AlwNI CAGNNNCTG 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 298, 341
BcoDI GTCTC 2 cut(s) 191, 294
BfaI CTAG 1 cut(s) 198
BmsI GCATC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bse1I ACTGG 2 cut(s) 111, 155
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 2 cut(s) 129, 360
BseMII CTCAG 2 cut(s) 202, 402
BseNI ACTGG 2 cut(s) 111, 155
BslFI GGGAC 1 cut(s) 140
BsmAI GTCTC 2 cut(s) 191, 294
BsmFI GGGAC 1 cut(s) 140
BspCNI CTCAG 2 cut(s) 201, 401
BsrI ACTGG 2 cut(s) 111, 155
BssECI CCNNGG 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 2 cut(s) 188, 388
BstF5I GGATG 2 cut(s) 129, 360
BstMAI GTCTC 2 cut(s) 191, 294
BtsCI GGATG 2 cut(s) 129, 360
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 405
CaiI CAGNNNCTG 1 cut(s) 395
CspCI CAANNNNNGTGG 2 cut(s) 261, 296
CviAII CATG 2 cut(s) 246, 263
CviJI RGCY 3 cut(s) 63, 322, 393
CviKI_1 RGCY 3 cut(s) 63, 322, 393
DdeI CTNAG 2 cut(s) 188, 388
Eco130I CCWWGG 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 2 cut(s) 249, 266
FaiI YATR 6 cut(s) 11, 21, 99, 168, 247, 264
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FaqI GGGAC 1 cut(s) 140
FatI CATG 2 cut(s) 245, 262
FokI GGATG 2 cut(s) 116, 347
FspBI CTAG 1 cut(s) 198
Hin1II CATG 2 cut(s) 249, 266
HinfI GANTC 4 cut(s) 32, 184, 211, 353
HphI GGTGA 2 cut(s) 298, 341
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 1 cut(s) 396
HpyAV CCTTC 3 cut(s) 7, 53, 326
HpyCH4V TGCA 2 cut(s) 230, 272
HpyF3I CTNAG 2 cut(s) 188, 388
Hsp92II CATG 2 cut(s) 249, 266
LpnPI CCDG 9 cut(s) 35, 92, 136, 146, 175, 342, 375, 380, 381
LweI GCATC 1 cut(s) 369
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 216, 236
MfeI CAATTG 1 cut(s) 231
MluCI AATT 1 cut(s) 231
MlyI GAGTC 3 cut(s) 41, 193, 205
MnlI CCTC 1 cut(s) 277
MseI TTAA 2 cut(s) 384, 409
MslI CAYNNNNRTG 1 cut(s) 225
MunI CAATTG 1 cut(s) 231
NlaIII CATG 2 cut(s) 249, 266
NmuCI GTSAC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 353
PflFI GACNNNGTC 1 cut(s) 214
PleI GAGTC 3 cut(s) 40, 192, 205
PpsI GAGTC 3 cut(s) 40, 192, 205
PsiI TTATAA 1 cut(s) 168
PstNI CAGNNNCTG 1 cut(s) 395
PsyI GACNNNGTC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 2 cut(s) 384, 409
SchI GAGTC 3 cut(s) 41, 193, 205
SetI ASST 1 cut(s) 288
SfaNI GCATC 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 1 cut(s) 231
SspMI CTAG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 172
TaqII GACCGA 1 cut(s) 204
TasI AATT 1 cut(s) 231
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 2 cut(s) 384, 409
Tru9I TTAA 2 cut(s) 384, 409
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 1 cut(s) 216
Tsp45I GTSAC 1 cut(s) 216
TspDTI ATGAA 2 cut(s) 26, 114
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 1 cut(s) 111
Tth111I GACNNNGTC 1 cut(s) 214
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.