FvH4_4g12590

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000298
Physical Location & Seq
Forward (+)
16272323 .. 16274888
2566 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12590.t2

Sequence Viewer

Length: 831 bp
ATGGGTCCAAGGAAACGAGCAGCAGACGTTTCACCCATCAACAGACAAGAACAACAAGAAGAATGTCAACCCAAAGGCCCCTGCAGGTTCCAACACCTTCCACAGGCTTTAGTCATCGACATCCTCTCACGGCTAGTCTTGGTCGACACCCTCCTCAACTGCAGGTGCGTATGCAAATCCTGGCTTTCCATTATCTCCGACCCTCATTTTTCGCTTACGCGACTCTCGAAATCACCCACCATTGGGATACTGGTCAAGATCAGATCTGACAAGAGGAAATCAAAGGTGATTGATTACACCCACTCATGCAATGGTTTGCTTCTTTTGTCTGGGGCTGGCCCGACTAGACTTGGCCCCTTGTATGTCTGCAATCCCATTTTGGGTGAGTTCATCGCTCTTCCGCTGTCTAATGAGAAGAGGCGATGCTGTAGCTTCTTCGGACTTGGTTATAGCGCCGCAACCAAGGAATATAAGGTGCTGCAAACATGTGGCGATGACTATCGCAATGGGGACAATGAGGCTCAGATATACACACTTGGTACTGGAGCTTGGAAAAGCATTGGGAAAACTCCGAAGGACTCTGCCCAGTTAGCGCCGTTCAATGCTGAACTCCATGGAGCTCTTCATTGGCTTTCCTTTGGTGGAGGAACATTCCAGTTTATACATGCATTTAACTTTGCAACAGAAGAGTTCCGCACACTACCCGCACCTGGTTACTTTGAGCCAATCGAGATGCAGTTTAAAGAGTGTCTCAAGTTGGGAGTGTTTGATGGTTGTTTGTTTTATGTGTGTGTGGTGATGATCCGAGTCAATTTGACATGTGGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

277

Amino Acids

30.7

Weight (kDa)

8.72

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 30 - 69 5.2e-08 F-box-like
F-box PF00646 31 - 70 2.5e-08 F-box domain
b-prop_At3g26010-like PF24750 75 - 251 2e-07 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 78 - 239 6.1e-21 F-box associated beta propeller domain
FBA_3 PF08268 86 - 238 1.6e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 153
Acc36I ACCTGC 2 cut(s) 75, 153
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 220
AciI CCGC 4 cut(s) 401, 456, 694, 705
AclWI GGATC 1 cut(s) 796
AfaI GTAC 1 cut(s) 541
AfiI CCNNNNNNNGG 5 cut(s) 103, 242, 243, 380, 710
AflIII ACRYGT 2 cut(s) 485, 818
AgsI TTSAA 1 cut(s) 601
AjnI CCWGG 2 cut(s) 179, 709
AluBI AGCT 3 cut(s) 432, 548, 620
AluI AGCT 3 cut(s) 432, 548, 620
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 1 cut(s) 755
AlwI GGATC 1 cut(s) 796
AoxI GGCC 3 cut(s) 76, 337, 352
ApeKI GCWGC 2 cut(s) 20, 478
AspLEI GCGC 2 cut(s) 455, 595
AspS9I GGNCC 4 cut(s) 5, 77, 338, 353
AsuHPI GGTGA 5 cut(s) 24, 225, 298, 395, 808
AvaII GGWCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 2 cut(s) 32, 465
BccI CCATC 2 cut(s) 44, 764
BceAI ACGGC 2 cut(s) 146, 580
BciT130I CCWGG 2 cut(s) 181, 711
BciVI GTATCC 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 755
BfaI CTAG 2 cut(s) 134, 345
BfmI CTRYAG 3 cut(s) 82, 160, 427
BfoI RGCGCY 2 cut(s) 456, 596
BfuAI ACCTGC 2 cut(s) 75, 153
BfuI GTATCC 1 cut(s) 240
BglII AGATCT 1 cut(s) 263
BisI GCNGC 3 cut(s) 21, 456, 479
BlsI GCNGC 3 cut(s) 22, 457, 480
Bme1390I CCNGG 2 cut(s) 181, 711
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 4 cut(s) 5, 77, 338, 353
BmiI GGNNCC 4 cut(s) 6, 79, 89, 355
BmrFI CCNGG 2 cut(s) 181, 711
BmrI ACTGGG 1 cut(s) 580
BmsI GCATC 2 cut(s) 413, 723
BmuI ACTGGG 1 cut(s) 580
BpmI CTGGAG 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 737
BsaBI GATNNNNATC 1 cut(s) 498
BsaJI CCNNGG 3 cut(s) 8, 462, 613
Bsc4I CCNNNNNNNGG 5 cut(s) 103, 242, 243, 380, 710
Bse1I ACTGG 4 cut(s) 255, 547, 586, 655
Bse3DI GCAATG 2 cut(s) 316, 511
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 2 cut(s) 181, 711
BseDI CCNNGG 3 cut(s) 8, 462, 613
BseGI GGATG 1 cut(s) 120
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 5 cut(s) 103, 242, 243, 380, 710
BseMI GCAATG 2 cut(s) 316, 511
BseMII CTCAG 1 cut(s) 536
BseNI ACTGG 4 cut(s) 255, 547, 586, 655
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 2 cut(s) 32, 465
Bsh1236I CGCG 1 cut(s) 220
BshFI GGCC 3 cut(s) 78, 339, 354
BsiHKAI GWGCWC 1 cut(s) 622
BslFI GGGAC 1 cut(s) 524
BslI CCNNNNNNNGG 5 cut(s) 103, 242, 243, 380, 710
BsmAI GTCTC 1 cut(s) 755
BsmFI GGGAC 1 cut(s) 524
BsnI GGCC 3 cut(s) 78, 339, 354
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 3 cut(s) 258, 263, 801
Bsp19I CCATGG 1 cut(s) 613
BspACI CCGC 4 cut(s) 401, 456, 694, 705
BspANI GGCC 3 cut(s) 78, 339, 354
BspCNI CTCAG 1 cut(s) 535
BspFNI CGCG 1 cut(s) 220
BspLI GGNNCC 4 cut(s) 6, 79, 89, 355
BspMAI CTGCAG 2 cut(s) 86, 164
BspMI ACCTGC 2 cut(s) 75, 153
BspPI GGATC 1 cut(s) 796
BspQI GCTCTTC 2 cut(s) 402, 627
BsrDI GCAATG 2 cut(s) 316, 511
BsrI ACTGG 4 cut(s) 255, 547, 586, 655
BssECI CCNNGG 3 cut(s) 8, 462, 613
BssMI GATC 3 cut(s) 258, 263, 801
BssT1I CCWWGG 3 cut(s) 8, 462, 613
Bst2UI CCWGG 2 cut(s) 181, 711
Bst6I CTCTTC 4 cut(s) 402, 410, 627, 681
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 1 cut(s) 522
BstDSI CCRYGG 1 cut(s) 613
BstENI CCTNNNNNAGG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 220
BstH2I RGCGCY 2 cut(s) 456, 596
BstHHI GCGC 2 cut(s) 455, 595
BstKTI GATC 3 cut(s) 261, 266, 804
BstMAI GTCTC 1 cut(s) 755
BstMBI GATC 3 cut(s) 258, 263, 801
BstMWI GCNNNNNNNGC 1 cut(s) 590
BstNI CCWGG 2 cut(s) 181, 711
BstNSI RCATGY 3 cut(s) 489, 668, 822
BstSCI CCNGG 2 cut(s) 179, 709
BstSFI CTRYAG 3 cut(s) 82, 160, 427
BstUI CGCG 1 cut(s) 220
BstV1I GCAGC 2 cut(s) 32, 465
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 3 cut(s) 78, 339, 354
BtgI CCRYGG 1 cut(s) 613
BtgZI GCGATG 3 cut(s) 376, 436, 507
BtsCI GGATG 1 cut(s) 120
BveI ACCTGC 2 cut(s) 75, 153
Cac8I GCNNGC 1 cut(s) 337
CfoI GCGC 2 cut(s) 455, 595
Cfr13I GGNCC 4 cut(s) 5, 77, 338, 353
CsiI ACCWGGT 1 cut(s) 709
Csp6I GTAC 1 cut(s) 540
CviAII CATG 5 cut(s) 306, 486, 614, 665, 819
CviQI GTAC 1 cut(s) 540
DdeI CTNAG 1 cut(s) 522
DpnI GATC 3 cut(s) 260, 265, 803
DpnII GATC 3 cut(s) 258, 263, 801
DraI TTTAAA 1 cut(s) 742
Eam1104I CTCTTC 4 cut(s) 402, 410, 627, 681
EarI CTCTTC 4 cut(s) 402, 410, 627, 681
Ecl136II GAGCTC 1 cut(s) 620
Eco130I CCWWGG 3 cut(s) 8, 462, 613
Eco24I GRGCYC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 5
Eco53kI GAGCTC 1 cut(s) 620
EcoICRI GAGCTC 1 cut(s) 620
EcoNI CCTNNNNNAGG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 77
EcoRII CCWGG 2 cut(s) 179, 709
EcoT14I CCWWGG 3 cut(s) 8, 462, 613
EcoT22I ATGCAT 1 cut(s) 670
EcoT38I GRGCYC 1 cut(s) 622
ErhI CCWWGG 3 cut(s) 8, 462, 613
FaeI CATG 5 cut(s) 309, 489, 617, 668, 822
FaqI GGGAC 1 cut(s) 524
FatI CATG 5 cut(s) 305, 485, 613, 664, 818
FauI CCCGC 1 cut(s) 712
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 3 cut(s) 21, 456, 479
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 1 cut(s) 622
Fsp4HI GCNGC 3 cut(s) 21, 456, 479
FspBI CTAG 2 cut(s) 134, 345
GlaI GCGC 2 cut(s) 454, 594
GluI GCNGC 3 cut(s) 21, 456, 479
GsuI CTGGAG 1 cut(s) 564
HaeII RGCGCY 2 cut(s) 456, 596
HaeIII GGCC 3 cut(s) 78, 339, 354
HhaI GCGC 2 cut(s) 455, 595
Hin1II CATG 5 cut(s) 309, 489, 617, 668, 822
Hin6I GCGC 2 cut(s) 453, 593
HinP1I GCGC 2 cut(s) 453, 593
HincII GTYRAC 2 cut(s) 68, 145
HindII GTYRAC 2 cut(s) 68, 145
HinfI GANTC 3 cut(s) 222, 578, 807
HphI GGTGA 5 cut(s) 24, 225, 298, 395, 808
Hpy166II GTNNAC 2 cut(s) 68, 145
Hpy188I TCNGA 7 cut(s) 199, 263, 268, 440, 525, 573, 806
Hpy188III TCNNGA 3 cut(s) 226, 256, 730
Hpy8I GTNNAC 2 cut(s) 68, 145
HpyAV CCTTC 2 cut(s) 107, 568
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 9 cut(s) 84, 162, 174, 309, 369, 481, 668, 680, 736
HpyF10VI GCNNNNNNNGC 1 cut(s) 590
HpyF3I CTNAG 1 cut(s) 522
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 5 cut(s) 309, 489, 617, 668, 822
HspAI GCGC 2 cut(s) 453, 593
Kzo9I GATC 3 cut(s) 258, 263, 801
LguI GCTCTTC 2 cut(s) 402, 627
LmnI GCTCC 2 cut(s) 545, 617
Lsp1109I GCAGC 2 cut(s) 32, 465
LweI GCATC 2 cut(s) 413, 723
MabI ACCWGGT 1 cut(s) 709
MaeI CTAG 2 cut(s) 134, 345
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 713
MalI GATC 3 cut(s) 260, 265, 803
MboI GATC 3 cut(s) 258, 263, 801
MboII GAAGA 6 cut(s) 71, 389, 427, 427, 614, 698
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 1 cut(s) 811
MlyI GAGTC 3 cut(s) 216, 572, 816
MmeI TCCRAC 2 cut(s) 115, 222
MnlI CCTC 8 cut(s) 134, 161, 164, 213, 267, 411, 511, 638
Mph1103I ATGCAT 1 cut(s) 670
MseI TTAA 2 cut(s) 672, 741
MspA1I CMGCKG 1 cut(s) 403
MspR9I CCNGG 2 cut(s) 181, 711
MvaI CCWGG 2 cut(s) 181, 711
MvnI CGCG 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 590
NcoI CCATGG 1 cut(s) 613
NdeII GATC 3 cut(s) 258, 263, 801
NlaIII CATG 5 cut(s) 309, 489, 617, 668, 822
NlaIV GGNNCC 4 cut(s) 6, 79, 89, 355
NsiI ATGCAT 1 cut(s) 670
NspI RCATGY 3 cut(s) 489, 668, 822
PaqCI CACCTGC 1 cut(s) 153
PciI ACATGT 2 cut(s) 485, 818
PciSI GCTCTTC 2 cut(s) 402, 627
PcsI WCGNNNNNNNCGW 1 cut(s) 224
PkrI GCNGC 3 cut(s) 22, 457, 480
PleI GAGTC 3 cut(s) 216, 572, 815
PpsI GAGTC 3 cut(s) 216, 572, 815
PscI ACATGT 2 cut(s) 485, 818
Psp124BI GAGCTC 1 cut(s) 622
Psp6I CCWGG 2 cut(s) 179, 709
PspGI CCWGG 2 cut(s) 179, 709
PspN4I GGNNCC 4 cut(s) 6, 79, 89, 355
PspPI GGNCC 4 cut(s) 5, 77, 338, 353
PstI CTGCAG 2 cut(s) 86, 164
PsuI RGATCY 1 cut(s) 263
RsaI GTAC 1 cut(s) 541
RsaNI GTAC 1 cut(s) 540
SacI GAGCTC 1 cut(s) 622
SalI GTCGAC 1 cut(s) 143
SapI GCTCTTC 2 cut(s) 402, 627
SaqAI TTAA 2 cut(s) 672, 741
SatI GCNGC 3 cut(s) 21, 456, 479
Sau3AI GATC 3 cut(s) 258, 263, 801
Sau96I GGNCC 4 cut(s) 5, 77, 338, 353
SbfI CCTGCAGG 1 cut(s) 86
SchI GAGTC 3 cut(s) 216, 572, 816
ScrFI CCNGG 2 cut(s) 181, 711
SdaI CCTGCAGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 622
SexAI ACCWGGT 1 cut(s) 709
SfaNI GCATC 2 cut(s) 413, 723
SfcI CTRYAG 3 cut(s) 82, 160, 427
SinI GGWCC 1 cut(s) 5
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse8387I CCTGCAGG 1 cut(s) 86
Sse9I AATT 1 cut(s) 811
SsiI CCGC 4 cut(s) 401, 456, 694, 705
SspMI CTAG 2 cut(s) 134, 345
SstI GAGCTC 1 cut(s) 622
StyD4I CCNGG 2 cut(s) 179, 709
StyI CCWWGG 3 cut(s) 8, 462, 613
TaiI ACGT 1 cut(s) 30
TaqI TCGA 4 cut(s) 117, 144, 227, 729
TasI AATT 1 cut(s) 811
TauI GCSGC 1 cut(s) 458
Tru1I TTAA 2 cut(s) 672, 741
Tru9I TTAA 2 cut(s) 672, 741
TseI GCWGC 2 cut(s) 20, 478
TspDTI ATGAA 2 cut(s) 379, 614
VpaK11BI GGWCC 1 cut(s) 5
XagI CCTNNNNNAGG 1 cut(s) 101
XceI RCATGY 3 cut(s) 489, 668, 822
XcmI CCANNNNNNNNNTGG 2 cut(s) 247, 308
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 2 cut(s) 134, 345
Zsp2I ATGCAT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.