Rmu_sc0000717.1_g000001

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000717.1
OG0000298
Physical Location & Seq
Forward (+)
1 .. 739
739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000717.1_g000001.1.cds

Sequence Viewer

Length: 646 bp
tgccaacaaatacaaggtgctgcaaacagactatggcaccagagaggcctttatatacatccttggtacaagagtttggaaaagcatcggaaaagctcctacaggcacgttctgcctttcgttcaatgctcttctgcacgagtctcttcattggatttcatatggcaatccttatccttattggaggatatattctttcaactttgaaagagaaaagtttcggtcactaccaccaccatctgtagatgatcagaagatggataatattttgagtttgggagtgttagaaggttctctccttttatgcgtctttccacggcatcttgtacgatttaacgggtgggttatgaagaattacggtgttcaagagtcttggactaaagcttttgttgtggatcgaaatccacaatttgccaggacaggtgtgtatgaacgaattctgttcttgagcgatggggaaatcctaatgaaaagtgattgtggtgtgattcgttataatcatgaaactaagaatcttatggaaactaaaatagttcgtactcgtcggacccgtattcatgcaattcgttattggtcatcctttgtttcactcgatgatgtttcaaaaggagaggtggtggaaaggtacaaaagtttcacttcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

214

Amino Acids

25.08

Weight (kDa)

9.47

Isoelectric Point (pI)

25.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 496
AccB1I GGYRCC 1 cut(s) 36
AclWI GGATC 1 cut(s) 403
AcsI RAATTY 1 cut(s) 436
AfaI GTAC 4 cut(s) 68, 328, 539, 627
AgsI TTSAA 5 cut(s) 125, 200, 207, 366, 604
AjnI CCWGG 1 cut(s) 414
AluBI AGCT 2 cut(s) 96, 384
AluI AGCT 2 cut(s) 96, 384
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 1 cut(s) 403
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 436
Asp700I GAANNNNTTC 2 cut(s) 217, 436
AspS9I GGNCC 1 cut(s) 547
AvaII GGWCC 1 cut(s) 547
BaeI ACNNNNGTAYC 3 cut(s) 58, 91, 617
BanI GGYRCC 1 cut(s) 36
BauI CACGAG 1 cut(s) 138
BbvI GCAGC 1 cut(s) 7
BccI CCATC 3 cut(s) 245, 251, 447
BceAI ACGGC 1 cut(s) 333
BciT130I CCWGG 1 cut(s) 416
BclI TGATCA 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 148
BfmI CTRYAG 2 cut(s) 100, 241
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 416
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 2 cut(s) 38, 549
BmrFI CCNGG 1 cut(s) 416
BmsI GCATC 2 cut(s) 94, 329
BpuEI CTTGAG 1 cut(s) 467
BsaBI GATNNNNATC 1 cut(s) 400
BsaJI CCNNGG 2 cut(s) 62, 315
BsaXI ACNNNNNCTCC 2 cut(s) 601, 631
Bse8I GATNNNNATC 1 cut(s) 400
BseBI CCWGG 1 cut(s) 416
BseDI CCNNGG 2 cut(s) 62, 315
BseGI GGATG 2 cut(s) 58, 576
BseJI GATNNNNATC 1 cut(s) 400
BseXI GCAGC 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 120
BshFI GGCC 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 36
BsmAI GTCTC 1 cut(s) 148
BsnI GGCC 1 cut(s) 48
Bsp143I GATC 2 cut(s) 248, 395
BspANI GGCC 1 cut(s) 48
BspHI TCATGA 1 cut(s) 500
BspLI GGNNCC 2 cut(s) 38, 549
BspPI GGATC 1 cut(s) 403
BspQI GCTCTTC 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 62, 315
BssMI GATC 2 cut(s) 248, 395
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 62
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 1 cut(s) 360
Bst6I CTCTTC 2 cut(s) 136, 151
BstAPI GCANNNNNTGC 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 508
BstDSI CCRYGG 1 cut(s) 315
BstF5I GGATG 2 cut(s) 58, 576
BstKTI GATC 2 cut(s) 251, 398
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 2 cut(s) 248, 395
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 414
BstSFI CTRYAG 2 cut(s) 100, 241
BstV1I GCAGC 1 cut(s) 7
BsuRI GGCC 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 315
BtgZI GCGATG 1 cut(s) 466
BtsCI GGATG 2 cut(s) 58, 576
CciI TCATGA 1 cut(s) 500
Cfr13I GGNCC 1 cut(s) 547
CseI GACGC 1 cut(s) 296
Csp6I GTAC 4 cut(s) 67, 327, 538, 626
CviAII CATG 2 cut(s) 501, 558
CviJI RGCY 3 cut(s) 48, 96, 384
CviKI_1 RGCY 3 cut(s) 48, 96, 384
CviQI GTAC 4 cut(s) 67, 327, 538, 626
DdeI CTNAG 1 cut(s) 508
DpnI GATC 2 cut(s) 250, 397
DpnII GATC 2 cut(s) 248, 395
Eam1104I CTCTTC 2 cut(s) 136, 151
EarI CTCTTC 2 cut(s) 136, 151
Eco130I CCWWGG 1 cut(s) 62
Eco147I AGGCCT 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 547
EcoRI GAATTC 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 62
FaeI CATG 2 cut(s) 504, 561
FalI AAGNNNNNCTT 1 cut(s) 623
FatI CATG 2 cut(s) 500, 557
FauNDI CATATG 1 cut(s) 161
FbaI TGATCA 1 cut(s) 248
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 2 cut(s) 45, 563
Fsp4HI GCNGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 1 cut(s) 48
HgaI GACGC 1 cut(s) 296
Hin1II CATG 2 cut(s) 504, 561
HindIII AAGCTT 1 cut(s) 382
HinfI GANTC 4 cut(s) 141, 369, 488, 512
Hpy188I TCNGA 3 cut(s) 90, 253, 547
Hpy188III TCNNGA 3 cut(s) 366, 446, 501
Hpy99I CGWCG 1 cut(s) 547
HpyAV CCTTC 1 cut(s) 282
HpyCH4III ACNGT 1 cut(s) 360
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 3 cut(s) 23, 137, 561
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 508
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 2 cut(s) 504, 561
Ksp22I TGATCA 1 cut(s) 248
Kzo9I GATC 2 cut(s) 248, 395
LguI GCTCTTC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 5 cut(s) 53, 88, 401, 406, 428
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 2 cut(s) 94, 329
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 223
MalI GATC 2 cut(s) 250, 397
MboI GATC 2 cut(s) 248, 395
MboII GAAGA 4 cut(s) 123, 138, 266, 362
MluCI AATT 4 cut(s) 353, 408, 436, 562
MlyI GAGTC 2 cut(s) 150, 378
MmeI TCCRAC 1 cut(s) 525
MnlI CCTC 3 cut(s) 38, 178, 605
MroXI GAANNNNTTC 2 cut(s) 217, 436
MseI TTAA 1 cut(s) 334
MspR9I CCNGG 1 cut(s) 416
MvaI CCWGG 1 cut(s) 416
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeI CATATG 1 cut(s) 161
NdeII GATC 2 cut(s) 248, 395
NlaIII CATG 2 cut(s) 504, 561
NlaIV GGNNCC 2 cut(s) 38, 549
NmuCI GTSAC 1 cut(s) 223
PagI TCATGA 1 cut(s) 500
PceI AGGCCT 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 548
PdmI GAANNNNTTC 2 cut(s) 217, 436
PfeI GAWTC 2 cut(s) 488, 512
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 2 cut(s) 149, 377
PpsI GAGTC 2 cut(s) 149, 377
PsiI TTATAA 1 cut(s) 496
Psp6I CCWGG 1 cut(s) 414
PspGI CCWGG 1 cut(s) 414
PspN4I GGNNCC 2 cut(s) 38, 549
PspPI GGNCC 1 cut(s) 547
RsaI GTAC 4 cut(s) 68, 328, 539, 627
RsaNI GTAC 4 cut(s) 67, 327, 538, 626
SapI GCTCTTC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 334
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 2 cut(s) 248, 395
Sau96I GGNCC 1 cut(s) 547
SchI GAGTC 2 cut(s) 150, 378
ScrFI CCNGG 1 cut(s) 416
SetI ASST 8 cut(s) 19, 98, 111, 293, 386, 425, 616, 627
SfaNI GCATC 2 cut(s) 94, 329
SfcI CTRYAG 2 cut(s) 100, 241
SinI GGWCC 1 cut(s) 547
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 4 cut(s) 353, 408, 436, 562
SseBI AGGCCT 1 cut(s) 48
SspI AATATT 1 cut(s) 266
StuI AGGCCT 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 414
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 360
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 398, 592
TaqII GACCGA 1 cut(s) 211
TasI AATT 4 cut(s) 353, 408, 436, 562
TfiI GAWTC 2 cut(s) 488, 512
Tru1I TTAA 1 cut(s) 334
Tru9I TTAA 1 cut(s) 334
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 8 cut(s) 138, 148, 363, 445, 483, 517, 546, 631
VpaK11BI GGWCC 1 cut(s) 547
XapI RAATTY 1 cut(s) 436
XmnI GAANNNNTTC 2 cut(s) 217, 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.