MD13G1177900.v1.1

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000298
Physical Location & Seq
Reverse (-)
14789498 .. 14790700
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1177900.v1.1.491

Sequence Viewer

Length: 1203 bp
ATGGCGAGAGAAAAGAAAGGAAATCCAAAGAAAAGAACAGAAGGCAGTGCAACAATCAGCAGCAAAAACAAAGAGAAAAGAGAAGAAGGATGCAACAAATTCCTACAACTTCCAAAGGCTTTGATCGTGGAGATTCTCTCAAGGGTATTGTCCATCAAAACCCTCCTGAATTGCAGGTGCGTTTGCAAAGAGTGGCTTTCCTTAATTTTCGACCCCGAATTTACTCGTCTCCACGCTTCAAGATCACCCATTGGCATCTTGATCAAGACCTATCCCCCTATAAGAAAATCTAGGAGACTTGATTTCACCCATATACTAGATTCTGCTGGTTCTGATTTGCAGCTCGAGAAAATAAGGTTTAGTCCCAAAAATAGCCTGCCCATCGGGGCCATGCCCGAATTTCGCTTGATAAACTCATGCAATGGCTTACTTTGCTTTTCTGGAGCTAATAGAGATTACCCCTGTTTTGTGTGCAATCCGATATTAGGTGAGTATATTACTATCCCACATACTGATAACACTCGAAATCGAAATAGTTGCTTTTTCGTTGGACTTGGTTTTAGCTCCGCGATGAATGAATATAAGGTGTTGCGAATGACCAATGGGACGGAGGCTGAGGTTTACACCATTGGTTCGGGAGTGTGGAGAAGTATTGGAAATGCTCCTGGAGACATTGATCAGTTGCCATTCAATGCTTTTCTGCATGGAGCGCTTCATTGGGTTTCATATAGTAGTAAAAGTCCCGAGTTTATACACTCTTTCGACTTTGAAACAGAACAGTTTCGACCCCTACCCGTCCCTAGCTTACCCGTGAATCAATTTTCGGATTGTTTCCTTTTGGAAGTGATAGGAGGCTGTCTCCATTTGTGTGTGTTTGGGGATGATTGTAGTAAATTTGACATGTGGGTAATGAAGGAATACGGTGTCCAAAAGTCTTGGACTAAAGTTCTTGTTTTCGAAAAACTGTACGATTGTGTAGAGGAACTGTGCTGTGATGTGTATGAACCAATTATGTATTTGAGTAATGGGGAAATCCTGATGTTATACAATAACCGCGCTATAGTTTGTTATAATGGAGAAAGAAAGAGTTTCAGGGAAATAAAGATTACTTGGACTCAGGCGCCCTTCGAGGCAATTGCCTACAGTCCATCCTTTGTTTCACTCTACAATGTCTCAAATGGTGAAGATATGAAGAGGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

401

Amino Acids

45.62

Weight (kDa)

8.05

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 35 - 73 1.1e-07 F-box-like
FBA_1 PF07734 133 - 387 9.9e-30 F-box associated beta propeller domain
FBA_3 PF08268 134 - 372 1.1e-25 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 137 - 278 2.4e-07 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1071
AarI CACCTGC 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 1120
AccII CGCG 2 cut(s) 569, 1056
AciI CCGC 2 cut(s) 567, 1054
AcsI RAATTY 4 cut(s) 98, 218, 398, 893
AcyI GRCGYC 1 cut(s) 1121
AfaI GTAC 2 cut(s) 968, 1199
AfeI AGCGCT 1 cut(s) 711
AfiI CCNNNNNNNGG 1 cut(s) 485
AflIII ACRYGT 1 cut(s) 900
AgsI TTSAA 3 cut(s) 240, 691, 770
AjnI CCWGG 1 cut(s) 664
AluBI AGCT 4 cut(s) 343, 446, 564, 804
AluI AGCT 4 cut(s) 343, 446, 564, 804
Alw26I GTCTC 5 cut(s) 233, 289, 663, 863, 1177
Ama87I CYCGRG 2 cut(s) 344, 743
Aor51HI AGCGCT 1 cut(s) 711
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 2 cut(s) 60, 340
ApoI RAATTY 4 cut(s) 98, 218, 398, 893
Asp700I GAANNNNTTC 1 cut(s) 780
AspLEI GCGC 3 cut(s) 712, 1058, 1123
AspS9I GGNCC 1 cut(s) 387
AsuHPI GGTGA 4 cut(s) 237, 298, 500, 1193
AsuII TTCGAA 1 cut(s) 957
AvaI CYCGRG 2 cut(s) 344, 743
BanI GGYRCC 1 cut(s) 1120
BbvCI CCTCAGC 1 cut(s) 615
BbvI GCAGC 2 cut(s) 72, 352
BccI CCATC 3 cut(s) 161, 389, 1156
BcgI CGANNNNNNTGC 4 cut(s) 519, 553, 1118, 1152
BciT130I CCWGG 1 cut(s) 666
BclI TGATCA 2 cut(s) 261, 676
BcoDI GTCTC 5 cut(s) 233, 289, 663, 863, 1177
BfaI CTAG 3 cut(s) 291, 317, 801
BfmI CTRYAG 2 cut(s) 1059, 1141
BfoI RGCGCY 2 cut(s) 713, 1124
BfuAI ACCTGC 1 cut(s) 165
BisI GCNGC 2 cut(s) 61, 341
BlsI GCNGC 2 cut(s) 62, 342
Bme1390I CCNGG 1 cut(s) 666
BmeT110I CYCGRG 2 cut(s) 344, 743
BmgT120I GGNCC 1 cut(s) 387
BmiI GGNNCC 2 cut(s) 388, 1122
BmrFI CCNGG 1 cut(s) 666
BmsI GCATC 2 cut(s) 80, 264
BplI GAGNNNNNCTC 4 cut(s) 122, 154, 843, 875
BpmI CTGGAG 2 cut(s) 462, 687
Bpu10I CCTNAGC 1 cut(s) 615
Bpu14I TTCGAA 1 cut(s) 957
BpuEI CTTGAG 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 1121
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 427
BseBI CCWGG 1 cut(s) 666
BseGI GGATG 3 cut(s) 95, 886, 1148
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 2 cut(s) 606, 1130
BseXI GCAGC 2 cut(s) 72, 352
Bsh1236I CGCG 2 cut(s) 569, 1056
BshFI GGCC 1 cut(s) 389
BshNI GGYRCC 1 cut(s) 1120
BsiHKCI CYCGRG 2 cut(s) 344, 743
BslFI GGGAC 4 cut(s) 348, 619, 726, 782
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 5 cut(s) 233, 289, 663, 863, 1177
BsmBI CGTCTC 1 cut(s) 233
BsmFI GGGAC 4 cut(s) 348, 619, 726, 782
BsnI GGCC 1 cut(s) 389
BsoBI CYCGRG 2 cut(s) 344, 743
Bsp119I TTCGAA 1 cut(s) 957
Bsp143I GATC 4 cut(s) 123, 242, 261, 676
BspACI CCGC 2 cut(s) 567, 1054
BspANI GGCC 1 cut(s) 389
BspCNI CTCAG 2 cut(s) 607, 1129
BspFNI CGCG 2 cut(s) 569, 1056
BspLI GGNNCC 2 cut(s) 388, 1122
BspMI ACCTGC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 957
BspT107I GGYRCC 1 cut(s) 1120
BsrDI GCAATG 1 cut(s) 427
BssMI GATC 4 cut(s) 123, 242, 261, 676
BssNI GRCGYC 1 cut(s) 1121
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 5 cut(s) 780, 923, 966, 987, 1145
Bst6I CTCTTC 1 cut(s) 1187
BstACI GRCGYC 1 cut(s) 1121
BstBI TTCGAA 1 cut(s) 957
BstC8I GCNNGC 1 cut(s) 377
BstDEI CTNAG 2 cut(s) 615, 1116
BstF5I GGATG 3 cut(s) 95, 886, 1148
BstFNI CGCG 2 cut(s) 569, 1056
BstH2I RGCGCY 2 cut(s) 713, 1124
BstHHI GCGC 3 cut(s) 712, 1058, 1123
BstKTI GATC 4 cut(s) 126, 245, 264, 679
BstMAI GTCTC 5 cut(s) 233, 289, 663, 863, 1177
BstMBI GATC 4 cut(s) 123, 242, 261, 676
BstMWI GCNNNNNNNGC 2 cut(s) 432, 709
BstNI CCWGG 1 cut(s) 666
BstNSI RCATGY 1 cut(s) 904
BstSCI CCNGG 1 cut(s) 664
BstSFI CTRYAG 2 cut(s) 1059, 1141
BstUI CGCG 2 cut(s) 569, 1056
BstV1I GCAGC 2 cut(s) 72, 352
BsuRI GGCC 1 cut(s) 389
BtgZI GCGATG 1 cut(s) 584
BtsCI GGATG 3 cut(s) 95, 886, 1148
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 52
BveI ACCTGC 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 377
CfoI GCGC 3 cut(s) 712, 1058, 1123
Cfr13I GGNCC 1 cut(s) 387
Csp6I GTAC 2 cut(s) 967, 1198
CviAII CATG 4 cut(s) 391, 417, 704, 901
CviQI GTAC 2 cut(s) 967, 1198
DdeI CTNAG 2 cut(s) 615, 1116
DinI GGCGCC 1 cut(s) 1122
DpnI GATC 4 cut(s) 125, 244, 263, 678
DpnII GATC 4 cut(s) 123, 242, 261, 676
Eam1104I CTCTTC 1 cut(s) 1187
EarI CTCTTC 1 cut(s) 1187
Eco47III AGCGCT 1 cut(s) 711
Eco88I CYCGRG 2 cut(s) 344, 743
EcoRII CCWGG 1 cut(s) 664
EgeI GGCGCC 1 cut(s) 1122
EheI GGCGCC 1 cut(s) 1122
Esp3I CGTCTC 1 cut(s) 233
FaeI CATG 4 cut(s) 394, 420, 707, 904
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FaqI GGGAC 4 cut(s) 348, 619, 726, 782
FatI CATG 4 cut(s) 390, 416, 703, 900
FbaI TGATCA 2 cut(s) 261, 676
Fnu4HI GCNGC 2 cut(s) 61, 341
FokI GGATG 3 cut(s) 102, 893, 1135
Fsp4HI GCNGC 2 cut(s) 61, 341
FspBI CTAG 3 cut(s) 291, 317, 801
GlaI GCGC 3 cut(s) 711, 1057, 1122
GluI GCNGC 2 cut(s) 61, 341
GsuI CTGGAG 2 cut(s) 462, 687
HaeII RGCGCY 2 cut(s) 713, 1124
HaeIII GGCC 1 cut(s) 389
HhaI GCGC 3 cut(s) 712, 1058, 1123
Hin1I GRCGYC 1 cut(s) 1121
Hin1II CATG 4 cut(s) 394, 420, 707, 904
Hin6I GCGC 3 cut(s) 710, 1056, 1121
HinP1I GCGC 3 cut(s) 710, 1056, 1121
HinfI GANTC 4 cut(s) 133, 320, 814, 1114
HphI GGTGA 4 cut(s) 237, 298, 500, 1193
Hpy166II GTNNAC 1 cut(s) 622
Hpy188I TCNGA 3 cut(s) 334, 480, 826
Hpy188III TCNNGA 9 cut(s) 166, 240, 259, 265, 346, 441, 636, 743, 1036
Hpy8I GTNNAC 1 cut(s) 622
HpyAV CCTTC 4 cut(s) 35, 80, 907, 1135
HpyCH4III ACNGT 5 cut(s) 780, 923, 966, 987, 1145
HpyCH4V TGCA 8 cut(s) 50, 93, 174, 186, 340, 420, 474, 703
HpyF10VI GCNNNNNNNGC 2 cut(s) 432, 709
HpyF3I CTNAG 2 cut(s) 615, 1116
Hsp92I GRCGYC 1 cut(s) 1121
Hsp92II CATG 4 cut(s) 394, 420, 707, 904
HspAI GCGC 3 cut(s) 710, 1056, 1121
KasI GGCGCC 1 cut(s) 1120
Ksp22I TGATCA 2 cut(s) 261, 676
Kzo9I GATC 4 cut(s) 123, 242, 261, 676
LmnI GCTCC 4 cut(s) 443, 569, 667, 707
Lsp1109I GCAGC 2 cut(s) 72, 352
LweI GCATC 2 cut(s) 80, 264
MaeI CTAG 3 cut(s) 291, 317, 801
MalI GATC 4 cut(s) 125, 244, 263, 678
MboI GATC 4 cut(s) 123, 242, 261, 676
MboII GAAGA 2 cut(s) 95, 1196
MfeI CAATTG 1 cut(s) 1134
MluCI AATT 9 cut(s) 98, 169, 204, 218, 398, 818, 893, 1008, 1134
Mly113I GGCGCC 1 cut(s) 1121
MlyI GAGTC 1 cut(s) 1108
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 7 cut(s) 173, 604, 610, 845, 973, 1123, 1188
MroXI GAANNNNTTC 1 cut(s) 780
MseI TTAA 1 cut(s) 203
MslI CAYNNNNRTG 1 cut(s) 867
MspR9I CCNGG 1 cut(s) 666
MunI CAATTG 1 cut(s) 1134
MvaI CCWGG 1 cut(s) 666
MvnI CGCG 2 cut(s) 569, 1056
MwoI GCNNNNNNNGC 2 cut(s) 432, 709
NarI GGCGCC 1 cut(s) 1121
NdeII GATC 4 cut(s) 123, 242, 261, 676
NlaIII CATG 4 cut(s) 394, 420, 707, 904
NlaIV GGNNCC 2 cut(s) 388, 1122
NspI RCATGY 1 cut(s) 904
NspV TTCGAA 1 cut(s) 957
PaeR7I CTCGAG 1 cut(s) 344
PaqCI CACCTGC 1 cut(s) 165
PciI ACATGT 1 cut(s) 900
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 3 cut(s) 133, 320, 814
PfoI TCCNGGA 1 cut(s) 664
PkrI GCNGC 2 cut(s) 62, 342
PleI GAGTC 1 cut(s) 1108
PluTI GGCGCC 1 cut(s) 1124
PpsI GAGTC 1 cut(s) 1108
PscI ACATGT 1 cut(s) 900
PsiI TTATAA 1 cut(s) 1071
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 2 cut(s) 388, 1122
PspPI GGNCC 1 cut(s) 387
RsaI GTAC 2 cut(s) 968, 1199
RsaNI GTAC 2 cut(s) 967, 1198
RseI CAYNNNNRTG 1 cut(s) 867
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 2 cut(s) 61, 341
Sau3AI GATC 4 cut(s) 123, 242, 261, 676
Sau96I GGNCC 1 cut(s) 387
SchI GAGTC 1 cut(s) 1108
ScrFI CCNGG 1 cut(s) 666
SfaNI GCATC 2 cut(s) 80, 264
SfcI CTRYAG 2 cut(s) 1059, 1141
SfoI GGCGCC 1 cut(s) 1122
Sfr274I CTCGAG 1 cut(s) 344
SfuI TTCGAA 1 cut(s) 957
SlaI CTCGAG 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 867
SmlI CTYRAG 2 cut(s) 139, 344
SmoI CTYRAG 2 cut(s) 139, 344
Sse9I AATT 9 cut(s) 98, 169, 204, 218, 398, 818, 893, 1008, 1134
SsiI CCGC 2 cut(s) 567, 1054
SspDI GGCGCC 1 cut(s) 1120
SspMI CTAG 3 cut(s) 291, 317, 801
StyD4I CCNGG 1 cut(s) 664
TaaI ACNGT 5 cut(s) 780, 923, 966, 987, 1145
TaqI TCGA 8 cut(s) 210, 345, 523, 529, 762, 784, 957, 1128
TasI AATT 9 cut(s) 98, 169, 204, 218, 398, 818, 893, 1008, 1134
TfiI GAWTC 3 cut(s) 133, 320, 814
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TscAI CASTG 1 cut(s) 52
TseI GCWGC 2 cut(s) 60, 340
TspDTI ATGAA 6 cut(s) 587, 591, 704, 714, 926, 1017
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 1 cut(s) 52
XapI RAATTY 4 cut(s) 98, 218, 398, 893
XceI RCATGY 1 cut(s) 904
XhoI CTCGAG 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 780
XspI CTAG 3 cut(s) 291, 317, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.