RchiOBHm_Chr4g0419901

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000298
Physical Location & Seq
Forward (+)
45396624 .. 45398389
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38973

Sequence Viewer

Length: 588 bp
ATGTGGATTATGAGAGATTATGGTGTCCAAGACTCTTGGACGAAGATTTTTGTTATTGAAAACTTGTACCCAAGAAGATATCAACCTGAAGAGTATGGACCAATTATGTTTTTGAGTAATGGTGAAATTCTAATGTCCTATGGTGTTGGTGCTGTGGTTTGTTATAACCCAGAAACAAAGAGTTTCAGGAAAACTAGTATTGCTCCGACTGAGTCAGAATTTGTTGCAGTTGCCTACAGTCCATCATTTGTTTCACTCTACGATATTGCAAAAGGAGAGGAGGTGGAAAGGATAAGAAACAATGAGAATTTCAACAAGCTGTTTAGTGAAGGGAGTAGTAGTGCTGCTGGTTCTGGAACGTCAGCTCACCAGTGCACAAATCTAAACCCAGGCTCTTGCCCACCTGGTGTTGAAGAGGCTCTCCCTAAACCTATTATTACAACTTCCTCTGCAACTAGCAATGAGCAAGTGGATTTTGCTCTGAGGATTGGGAGTAAGTGCGCTATATGTGGTGGGCAATTGGGTTATGTTTTCAGAGGAAAAGGGTTCGCAATGTGTCAAAAATGTTTTGATGCTAGTTCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

195

Amino Acids

21.33

Weight (kDa)

5.29

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
AcsI RAATTY 3 cut(s) 126, 218, 307
AcuI CTGAAG 1 cut(s) 108
AdeI CACNNNGTG 1 cut(s) 407
AfaI GTAC 1 cut(s) 68
AgsI TTSAA 3 cut(s) 59, 313, 413
AhlI ACTAGT 1 cut(s) 194
AjnI CCWGG 2 cut(s) 388, 403
AluBI AGCT 2 cut(s) 319, 365
AluI AGCT 2 cut(s) 319, 365
Alw21I GWGCWC 1 cut(s) 377
Alw44I GTGCAC 1 cut(s) 373
ApaLI GTGCAC 1 cut(s) 373
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 3 cut(s) 126, 218, 307
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 134, 359
AvaII GGWCC 1 cut(s) 98
BaeGI GKGCMC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 331
BccI CCATC 1 cut(s) 250
BciT130I CCWGG 2 cut(s) 390, 405
BcuI ACTAGT 1 cut(s) 194
BfaI CTAG 3 cut(s) 195, 456, 576
BfmI CTRYAG 1 cut(s) 235
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
Bme1390I CCNGG 2 cut(s) 390, 405
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmrFI CCNGG 2 cut(s) 390, 405
BmsI GCATC 1 cut(s) 562
BsaJI CCNNGG 1 cut(s) 388
BsaXI ACNNNNNCTCC 4 cut(s) 267, 297, 325, 355
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 2 cut(s) 466, 558
BseBI CCWGG 2 cut(s) 390, 405
BseDI CCNNGG 1 cut(s) 388
BseMI GCAATG 2 cut(s) 466, 558
BseMII CTCAG 2 cut(s) 201, 473
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 293
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 1 cut(s) 331
BsiHKAI GWGCWC 1 cut(s) 377
Bsp1286I GDGCHC 1 cut(s) 377
BspCNI CTCAG 2 cut(s) 202, 474
BsrDI GCAATG 2 cut(s) 466, 558
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 388
Bst2UI CCWGG 2 cut(s) 390, 405
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 2 cut(s) 84, 408
BstDEI CTNAG 2 cut(s) 210, 482
BstHHI GCGC 1 cut(s) 503
BstNI CCWGG 2 cut(s) 390, 405
BstSCI CCNGG 2 cut(s) 388, 403
BstSFI CTRYAG 1 cut(s) 235
BstSLI GKGCMC 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 377
CfoI GCGC 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 98
CsiI ACCWGGT 1 cut(s) 403
Csp6I GTAC 1 cut(s) 67
CviJI RGCY 4 cut(s) 319, 365, 393, 419
CviKI_1 RGCY 4 cut(s) 319, 365, 393, 419
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 2 cut(s) 210, 482
DraIII CACNNNGTG 1 cut(s) 407
Eam1104I CTCTTC 2 cut(s) 84, 408
EarI CTCTTC 2 cut(s) 84, 408
Eco32I GATATC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 388, 403
EcoRV GATATC 1 cut(s) 80
FaiI YATR 9 cut(s) 11, 21, 96, 107, 141, 165, 506, 508, 528
Fnu4HI GCNGC 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 345
FspBI CTAG 3 cut(s) 195, 456, 576
GlaI GCGC 1 cut(s) 502
GluI GCNGC 1 cut(s) 345
HhaI GCGC 1 cut(s) 503
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HinfI GANTC 2 cut(s) 32, 212
HphI GGTGA 2 cut(s) 134, 359
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 4 cut(s) 207, 217, 483, 536
Hpy188III TCNNGA 3 cut(s) 187, 354, 585
Hpy8I GTNNAC 1 cut(s) 375
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 359
HpyCH4V TGCA 4 cut(s) 227, 269, 375, 452
HpyF3I CTNAG 2 cut(s) 210, 482
HpySE526I ACGT 1 cut(s) 359
HspAI GCGC 1 cut(s) 501
LmnI GCTCC 1 cut(s) 208
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 1 cut(s) 562
MabI ACCWGGT 1 cut(s) 403
MaeI CTAG 3 cut(s) 195, 456, 576
MaeII ACGT 1 cut(s) 359
MboII GAAGA 4 cut(s) 55, 87, 101, 425
MfeI CAATTG 1 cut(s) 518
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 5 cut(s) 102, 126, 218, 307, 518
MlyI GAGTC 2 cut(s) 26, 221
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 6 cut(s) 271, 274, 409, 457, 477, 530
MspR9I CCNGG 2 cut(s) 390, 405
MunI CAATTG 1 cut(s) 518
MvaI CCWGG 2 cut(s) 390, 405
PflFI GACNNNGTC 1 cut(s) 211
PkrI GCNGC 1 cut(s) 346
PleI GAGTC 2 cut(s) 26, 220
PpsI GAGTC 2 cut(s) 26, 220
PsiI TTATAA 1 cut(s) 165
Psp6I CCWGG 2 cut(s) 388, 403
PspGI CCWGG 2 cut(s) 388, 403
PspPI GGNCC 1 cut(s) 98
PsyI GACNNNGTC 1 cut(s) 211
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SatI GCNGC 1 cut(s) 345
Sau96I GGNCC 1 cut(s) 98
SchI GAGTC 2 cut(s) 26, 221
ScrFI CCNGG 2 cut(s) 390, 405
SduI GDGCHC 1 cut(s) 377
SetI ASST 7 cut(s) 88, 285, 321, 362, 367, 406, 433
SexAI ACCWGGT 1 cut(s) 403
SfaNI GCATC 1 cut(s) 562
SfcI CTRYAG 1 cut(s) 235
SinI GGWCC 1 cut(s) 98
SpeI ACTAGT 1 cut(s) 194
Sse9I AATT 5 cut(s) 102, 126, 218, 307, 518
SspMI CTAG 3 cut(s) 195, 456, 576
StyD4I CCNGG 2 cut(s) 388, 403
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 1 cut(s) 362
TasI AATT 5 cut(s) 102, 126, 218, 307, 518
TscAI CASTG 1 cut(s) 377
TseI GCWGC 1 cut(s) 344
TspRI CASTG 1 cut(s) 377
Tth111I GACNNNGTC 1 cut(s) 211
VneI GTGCAC 1 cut(s) 373
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 3 cut(s) 126, 218, 307
XspI CTAG 3 cut(s) 195, 456, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.