Rroxscaffold_5G00362800

F-box protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
43880103 .. 43882607
2505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00362800.1

Sequence Viewer

Length: 402 bp
ATGGTCCATTGTGTGTGTGCAATTCAATTTTTGGTTAATTCATCACTCTTCCACCTACTGATGGGAGGAGGCTATGCTATAGCTTTTTCTTTTAGTAGGTGGAGGCTATGCTATAGCTTTTTCGGACTTGGTTATAGTGTCGCAACCAAGGAATACAAGGTGCTACAAACATGCAGTGGCGACGACCGCTCCGATGAGAATGAGGCTCAGATATACACAATTGGTTCGGGGGTTTGGAAAAGCATTGGGAAAACTCCTCAGGACTCTGCCCAGTTAGCTTCATTCAATGCTCTTCTGCATGGAGCTCTTCATTGGCTTTCCTTTGGTGGAAGAACATTTGAGTTCATACATGCATTTAACTTTGGAACAGAACAGTTCCGCACACTGCCTCCAGCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

14.75

Weight (kDa)

6.94

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 37 - 129 2.9e-13 F-box associated beta propeller domain
FBA_3 PF08268 43 - 129 3.5e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 189
AciI CCGC 2 cut(s) 187, 379
AfiI CCNNNNNNNGG 2 cut(s) 61, 395
AgsI TTSAA 2 cut(s) 26, 286
AluBI AGCT 5 cut(s) 83, 117, 278, 305, 395
AluI AGCT 5 cut(s) 83, 117, 278, 305, 395
Alw21I GWGCWC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 258
BanII GRGCYC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 307
BccI CCATC 1 cut(s) 55
BfmI CTRYAG 2 cut(s) 78, 112
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrI ACTGGG 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 147
BsaXI ACNNNNNCTCC 3 cut(s) 173, 203, 373
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 395
Bse1I ACTGG 1 cut(s) 271
Bse21I CCTNAGG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 147
BseLI CCNNNNNNNGG 2 cut(s) 61, 395
BseMII CTCAG 2 cut(s) 221, 272
BseNI ACTGG 1 cut(s) 271
BseRI GAGGAG 2 cut(s) 81, 246
Bsh1285I CGRYCG 1 cut(s) 187
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 307
BslI CCNNNNNNNGG 2 cut(s) 61, 395
Bsp1286I GDGCHC 1 cut(s) 307
BspACI CCGC 2 cut(s) 187, 379
BspCNI CTCAG 2 cut(s) 220, 271
BspQI GCTCTTC 2 cut(s) 297, 312
BsrBI CCGCTC 1 cut(s) 189
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 375
Bst6I CTCTTC 3 cut(s) 53, 297, 312
BstDEI CTNAG 2 cut(s) 207, 258
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 2 cut(s) 186, 275
BstNSI RCATGY 2 cut(s) 174, 353
BstSFI CTRYAG 2 cut(s) 78, 112
Bsu36I CCTNAGG 1 cut(s) 258
BtsI GCAGTG 2 cut(s) 181, 383
BtsIMutI CAGTG 2 cut(s) 181, 383
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 3 cut(s) 171, 299, 350
CviJI RGCY 9 cut(s) 72, 83, 106, 117, 206, 278, 305, 316, 395
CviKI_1 RGCY 9 cut(s) 72, 83, 106, 117, 206, 278, 305, 316, 395
DdeI CTNAG 2 cut(s) 207, 258
Eam1104I CTCTTC 3 cut(s) 53, 297, 312
EarI CTCTTC 3 cut(s) 53, 297, 312
Ecl136II GAGCTC 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 305
Eco81I CCTNAGG 1 cut(s) 258
EcoICRI GAGCTC 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 3 cut(s) 174, 302, 353
FatI CATG 3 cut(s) 170, 298, 349
FriOI GRGCYC 1 cut(s) 307
GsuI CTGGAG 1 cut(s) 375
Hin1II CATG 3 cut(s) 174, 302, 353
HinfI GANTC 1 cut(s) 263
Hpy188I TCNGA 3 cut(s) 125, 193, 210
Hpy188III TCNNGA 1 cut(s) 260
Hpy99I CGWCG 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 375
HpyCH4V TGCA 4 cut(s) 20, 174, 298, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 275
HpyF3I CTNAG 2 cut(s) 207, 258
Hsp92II CATG 3 cut(s) 174, 302, 353
LguI GCTCTTC 2 cut(s) 297, 312
LmnI GCTCC 2 cut(s) 194, 302
LpnPI CCDG 3 cut(s) 245, 284, 381
MbiI CCGCTC 1 cut(s) 189
MboII GAAGA 4 cut(s) 40, 284, 299, 342
MfeI CAATTG 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 4 cut(s) 21, 26, 37, 219
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 6 cut(s) 59, 62, 96, 196, 267, 399
Mph1103I ATGCAT 1 cut(s) 355
MseI TTAA 3 cut(s) 36, 357, 400
MspA1I CMGCKG 1 cut(s) 395
MunI CAATTG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 186, 275
NlaIII CATG 3 cut(s) 174, 302, 353
NsiI ATGCAT 1 cut(s) 355
NspI RCATGY 2 cut(s) 174, 353
PciSI GCTCTTC 2 cut(s) 297, 312
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 307
PspPI GGNCC 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 395
SacI GAGCTC 1 cut(s) 307
SapI GCTCTTC 2 cut(s) 297, 312
SaqAI TTAA 3 cut(s) 36, 357, 400
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 257
SduI GDGCHC 1 cut(s) 307
SetI ASST 8 cut(s) 57, 85, 101, 119, 162, 280, 307, 397
SfcI CTRYAG 2 cut(s) 78, 112
SgeI CNNG 9 cut(s) 140, 160, 169, 183, 240, 272, 283, 311, 362
SinI GGWCC 1 cut(s) 4
Sse9I AATT 4 cut(s) 21, 26, 37, 219
SsiI CCGC 2 cut(s) 187, 379
SstI GAGCTC 1 cut(s) 307
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 375
TasI AATT 4 cut(s) 21, 26, 37, 219
Tru1I TTAA 3 cut(s) 36, 357, 400
Tru9I TTAA 3 cut(s) 36, 357, 400
TscAI CASTG 2 cut(s) 181, 390
TspDTI ATGAA 4 cut(s) 30, 270, 299, 334
TspRI CASTG 2 cut(s) 181, 390
VpaK11BI GGWCC 1 cut(s) 4
XceI RCATGY 2 cut(s) 174, 353
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.