Rorug04G0158900

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000298
Physical Location & Seq
Forward (+)
27742666 .. 27744002
1337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0158900.1

Sequence Viewer

Length: 510 bp
ATGATGGTAAAACGTTGCAGGAGCGCTATTGATTCGTCTTTGTTTAAGCAGTGGCTGAAGAACATGGAGAGTGAAACTGGGATTCTAAGCGACGGTTCTTTGGCTCTGAAACGAGTTCTAATTCAGGGTGTGGATATGTTTGGAAAGAGGATTGGGTTTCTGAAGTTTGAAGCAGATGTGATTGATAAAGAAACAGGGGAAAAGGTTCCAGGTATTGTGTTTGCACGCGGACCGGCTGTAGCTGTGCTTATACTTTTGGAATCGGAGGGCAAGGCTTATGCTGTTCTTACTGAACAGGTTAGAGTACCTGTTGGAAGGATCATACTGGAGTTGCCTGCTGGAATGTTGGATGATGACAAGGGTGATTTTCTCGGCACCGCAATCCGTGAGGTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCAATATGTATATATGTATAATGCCATGTATATTTGCTGTGTCATATCTCTTTCTGCTTGTATTTTGGAAAGTTCATGTAATCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

169

Amino Acids

18.71

Weight (kDa)

6.59

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 374
AccII CGCG 1 cut(s) 228
AciI CCGC 2 cut(s) 228, 378
AclI AACGTT 1 cut(s) 13
AclWI GGATC 1 cut(s) 326
AcuI CTGAAG 2 cut(s) 77, 182
AfaI GTAC 1 cut(s) 306
AfeI AGCGCT 1 cut(s) 25
AgsI TTSAA 1 cut(s) 170
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 2 cut(s) 242, 507
AluI AGCT 2 cut(s) 242, 507
Alw26I GTCTC 1 cut(s) 397
AlwI GGATC 1 cut(s) 326
AlwNI CAGNNNCTG 1 cut(s) 55
Aor51HI AGCGCT 1 cut(s) 25
Asp700I GAANNNNTTC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 374
AvaII GGWCC 1 cut(s) 230
BanI GGYRCC 1 cut(s) 374
BciT130I CCWGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 397
BfmI CTRYAG 1 cut(s) 237
BfoI RGCGCY 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 207, 376
BmrFI CCNGG 1 cut(s) 210
BmrI ACTGGG 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 347
BsaI GGTCTC 1 cut(s) 397
Bse118I RCCGGY 1 cut(s) 232
Bse1I ACTGG 2 cut(s) 82, 330
BseBI CCWGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 355
BseNI ACTGG 2 cut(s) 82, 330
Bsh1236I CGCG 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 374
BsiSI CCGG 1 cut(s) 233
BsmAI GTCTC 1 cut(s) 397
Bso31I GGTCTC 1 cut(s) 397
Bsp143I GATC 1 cut(s) 318
BspACI CCGC 2 cut(s) 228, 378
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 2 cut(s) 207, 376
BspPI GGATC 1 cut(s) 326
BspT107I GGYRCC 1 cut(s) 374
BspTNI GGTCTC 1 cut(s) 397
BsrFI RCCGGY 1 cut(s) 232
BsrI ACTGG 2 cut(s) 82, 330
BssAI RCCGGY 1 cut(s) 232
BssMI GATC 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 226, 336
BstDEI CTNAG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 355
BstFNI CGCG 1 cut(s) 228
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 1 cut(s) 321
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 1 cut(s) 318
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 237
BstUI CGCG 1 cut(s) 228
BtsCI GGATG 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 2 cut(s) 226, 336
CaiI CAGNNNCTG 1 cut(s) 55
CfoI GCGC 1 cut(s) 26
Cfr10I RCCGGY 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 230
CpoI CGGWCCG 1 cut(s) 230
Csp6I GTAC 1 cut(s) 305
CspI CGGWCCG 1 cut(s) 230
CviAII CATG 3 cut(s) 64, 447, 497
CviJI RGCY 6 cut(s) 55, 104, 236, 242, 275, 507
CviKI_1 RGCY 6 cut(s) 55, 104, 236, 242, 275, 507
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 1 cut(s) 86
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 230
Eco47III AGCGCT 1 cut(s) 25
Eco57I CTGAAG 2 cut(s) 77, 182
EcoRII CCWGG 1 cut(s) 208
FaeI CATG 3 cut(s) 67, 450, 500
FatI CATG 3 cut(s) 63, 446, 496
FokI GGATG 1 cut(s) 362
GlaI GCGC 1 cut(s) 25
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 27
HapII CCGG 1 cut(s) 233
HhaI GCGC 1 cut(s) 26
Hin1II CATG 3 cut(s) 67, 450, 500
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 3 cut(s) 32, 82, 260
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 374
Hpy188I TCNGA 3 cut(s) 108, 162, 265
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 309
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 2 cut(s) 18, 224
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 3 cut(s) 67, 450, 500
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 1 cut(s) 318
LmnI GCTCC 1 cut(s) 21
MaeII ACGT 1 cut(s) 13
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 1 cut(s) 70
MluCI AATT 1 cut(s) 120
MmeI TCCRAC 2 cut(s) 292, 327
MnlI CCTC 3 cut(s) 141, 259, 382
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 507
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
MvnI CGCG 1 cut(s) 228
NdeII GATC 1 cut(s) 318
NlaIII CATG 3 cut(s) 67, 450, 500
NlaIV GGNNCC 2 cut(s) 207, 376
NmeAIII GCCGAG 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 3 cut(s) 32, 82, 260
Psp1406I AACGTT 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 207, 376
PspPI GGNCC 1 cut(s) 230
PstNI CAGNNNCTG 1 cut(s) 55
PvuII CAGCTG 1 cut(s) 507
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
Rsr2I CGGWCCG 1 cut(s) 230
RsrII CGGWCCG 1 cut(s) 230
SaqAI TTAA 1 cut(s) 45
Sau3AI GATC 1 cut(s) 318
Sau96I GGNCC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 210
SetI ASST 8 cut(s) 16, 207, 214, 244, 300, 310, 393, 509
SfcI CTRYAG 1 cut(s) 237
SinI GGWCC 1 cut(s) 230
Sse9I AATT 1 cut(s) 120
SsiI CCGC 2 cut(s) 228, 378
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 1 cut(s) 16
TasI AATT 1 cut(s) 120
TfiI GAWTC 3 cut(s) 32, 82, 260
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 485
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.