RchiOBHm_Chr4g0395601

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000298
Physical Location & Seq
Forward (+)
11387126 .. 11392310
5185 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36804

Sequence Viewer

Length: 831 bp
ATGAATCAATTCCAGCCCTCTATTTATCACAAATCCAAAACCCATACCTCTGCTCTCTGCTCTTTGCGCCTTCGCCAAATCCCCTTCCAGACTTGGCAGTTCTGGTATTCCTCTAAAAACCCCATTTCTTTCTCCCCAAACAAAGAAAACACTATGAATCATTCAAAGAAAAGACTAGCCTCAATCAGAAGCAGCAAAGGGAAAAGAGACCAATGGCAGCCCACAGGTCCTTGCAGATTCCGGCAACTTCCACCTACTTTAGTCATGAACATTCTCTCCAGGCTCTCCCCAAACACCCTCTTCAGCTGCAGGTGCGTTTGCAAATCATGGCTTTTTATGATTTCCGACCCTCATTTCAATCGTCTCCACCATTCAAGATCACCCATGGGAATCTTGATCCAGACCTATCCTCATCGCCATAATTGGAAATCAAGGAAATTAGATTTCACCCAGATACTAGAATGTGCTGGTCCTGATTTGCAGCTAGAGAAAATGAGTTTTCGTCCCAAAATTAGCATACCCCTCATTGGTGACAGAACTGATCCGACTGTGGAATATGGTCTGATAAACTCGTGCAACGGATTACTCTGTTTGTGTGGACCTCAAAATAATAAACTTTTGTATGTGTGCAATCCCATTTTGGGTGAGTTCATCGCCACTCCACCTCTTGATACCGGTGTTAAGCTCAGCTCTTTCGTTGGACTTGGTTTTAGTGCTGCTACCAATGAGTACAAGGTACTTAACACTAGCTGTTCGCGTCGGGCGCAGATGTACACCATTGGAACAGGAGTGTGGAGAGACATTGGAAAGCCTCCTTATGGCGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

276

Amino Acids

31.44

Weight (kDa)

9.84

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 81 - 118 8.8e-10 F-box-like
F-box PF00646 82 - 121 8.1e-10 F-box domain
FBA_1 PF07734 180 - 270 2.4e-08 F-box associated beta propeller domain
FBA_3 PF08268 188 - 269 8.1e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 300
Acc36I ACCTGC 1 cut(s) 300
AccII CGCG 1 cut(s) 757
AclWI GGATC 2 cut(s) 391, 536
AcuI CTGAAG 1 cut(s) 286
AfaI GTAC 3 cut(s) 731, 738, 773
AfiI CCNNNNNNNGG 3 cut(s) 527, 641, 818
AgeI ACCGGT 1 cut(s) 674
AgsI TTSAA 3 cut(s) 165, 358, 375
AjnI CCWGG 1 cut(s) 278
AloI GAACNNNNNNTCC 2 cut(s) 260, 292
AluBI AGCT 5 cut(s) 306, 484, 685, 690, 750
AluI AGCT 5 cut(s) 306, 484, 685, 690, 750
Alw26I GTCTC 3 cut(s) 201, 368, 792
AlwI GGATC 2 cut(s) 391, 536
ApeKI GCWGC 5 cut(s) 192, 217, 306, 481, 716
AsiGI ACCGGT 1 cut(s) 674
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 3 cut(s) 69, 766, 824
AspS9I GGNCC 3 cut(s) 227, 470, 599
AsuHPI GGTGA 4 cut(s) 372, 439, 542, 656
AvaII GGWCC 3 cut(s) 227, 470, 599
BaeI ACNNNNGTAYC 2 cut(s) 663, 696
BauI CACGAG 1 cut(s) 571
BbvI GCAGC 5 cut(s) 204, 229, 293, 493, 703
BciT130I CCWGG 1 cut(s) 280
BcoDI GTCTC 3 cut(s) 201, 368, 792
BfaI CTAG 4 cut(s) 176, 458, 485, 747
BfmI CTRYAG 1 cut(s) 307
BfoI RGCGCY 1 cut(s) 825
BfuAI ACCTGC 1 cut(s) 300
BisI GCNGC 5 cut(s) 193, 218, 307, 482, 717
BlpI GCTNAGC 1 cut(s) 686
BlsI GCNGC 5 cut(s) 194, 219, 308, 483, 718
Bme1390I CCNGG 1 cut(s) 280
Bme18I GGWCC 3 cut(s) 227, 470, 599
BmgT120I GGNCC 3 cut(s) 227, 470, 599
BmrFI CCNGG 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 262
Bpu1102I GCTNAGC 1 cut(s) 686
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 384
BsaWI WCCGGW 1 cut(s) 674
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 3 cut(s) 527, 641, 818
Bse118I RCCGGY 1 cut(s) 674
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 384
BseLI CCNNNNNNNGG 3 cut(s) 527, 641, 818
BseMII CTCAG 1 cut(s) 700
BseXI GCAGC 5 cut(s) 204, 229, 293, 493, 703
Bsh1236I CGCG 1 cut(s) 757
BshTI ACCGGT 1 cut(s) 674
BsiSI CCGG 2 cut(s) 241, 675
BslFI GGGAC 1 cut(s) 489
BslI CCNNNNNNNGG 3 cut(s) 527, 641, 818
BsmAI GTCTC 3 cut(s) 201, 368, 792
BsmBI CGTCTC 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 489
Bso31I GGTCTC 1 cut(s) 201
Bsp1407I TGTACA 1 cut(s) 771
Bsp143I GATC 3 cut(s) 377, 396, 541
Bsp1720I GCTNAGC 1 cut(s) 686
Bsp19I CCATGG 1 cut(s) 384
BspCNI CTCAG 1 cut(s) 699
BspFNI CGCG 1 cut(s) 757
BspHI TCATGA 1 cut(s) 264
BspMAI CTGCAG 1 cut(s) 311
BspMI ACCTGC 1 cut(s) 300
BspPI GGATC 2 cut(s) 391, 536
BspTNI GGTCTC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 674
BsrGI TGTACA 1 cut(s) 771
BssAI RCCGGY 1 cut(s) 674
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 3 cut(s) 377, 396, 541
BssSI CACGAG 1 cut(s) 571
BssT1I CCWWGG 1 cut(s) 384
Bst2BI CACGAG 1 cut(s) 571
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 1 cut(s) 550
Bst6I CTCTTC 1 cut(s) 305
BstAUI TGTACA 1 cut(s) 771
BstDEI CTNAG 1 cut(s) 686
BstDSI CCRYGG 1 cut(s) 384
BstFNI CGCG 1 cut(s) 757
BstH2I RGCGCY 1 cut(s) 825
BstHHI GCGC 3 cut(s) 69, 766, 824
BstKTI GATC 3 cut(s) 380, 399, 544
BstMAI GTCTC 3 cut(s) 201, 368, 792
BstMBI GATC 3 cut(s) 377, 396, 541
BstMWI GCNNNNNNNGC 3 cut(s) 66, 312, 763
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 278
BstSFI CTRYAG 1 cut(s) 307
BstUI CGCG 1 cut(s) 757
BstV1I GCAGC 5 cut(s) 204, 229, 293, 493, 703
BtgI CCRYGG 1 cut(s) 384
BtgZI GCGATG 2 cut(s) 398, 637
BveI ACCTGC 1 cut(s) 300
CciI TCATGA 1 cut(s) 264
CfoI GCGC 3 cut(s) 69, 766, 824
Cfr10I RCCGGY 1 cut(s) 674
Cfr13I GGNCC 3 cut(s) 227, 470, 599
CseI GACGC 1 cut(s) 746
Csp6I GTAC 3 cut(s) 730, 737, 772
CspAI ACCGGT 1 cut(s) 674
CviAII CATG 3 cut(s) 265, 327, 385
CviQI GTAC 3 cut(s) 730, 737, 772
DdeI CTNAG 1 cut(s) 686
DpnI GATC 3 cut(s) 379, 398, 543
DpnII GATC 3 cut(s) 377, 396, 541
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 3 cut(s) 227, 470, 599
Eco57I CTGAAG 1 cut(s) 286
EcoO109I RGGNCCY 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
Esp3I CGTCTC 1 cut(s) 368
FaeI CATG 3 cut(s) 268, 330, 388
FaqI GGGAC 1 cut(s) 489
FatI CATG 3 cut(s) 264, 326, 384
Fnu4HI GCNGC 5 cut(s) 193, 218, 307, 482, 717
Fsp4HI GCNGC 5 cut(s) 193, 218, 307, 482, 717
FspBI CTAG 4 cut(s) 176, 458, 485, 747
GlaI GCGC 3 cut(s) 68, 765, 823
GluI GCNGC 5 cut(s) 193, 218, 307, 482, 717
GsuI CTGGAG 1 cut(s) 262
HaeII RGCGCY 1 cut(s) 825
HapII CCGG 2 cut(s) 241, 675
HgaI GACGC 1 cut(s) 746
HhaI GCGC 3 cut(s) 69, 766, 824
Hin1II CATG 3 cut(s) 268, 330, 388
Hin6I GCGC 3 cut(s) 67, 764, 822
HinP1I GCGC 3 cut(s) 67, 764, 822
HinfI GANTC 4 cut(s) 4, 157, 237, 390
HpaII CCGG 2 cut(s) 241, 675
HphI GGTGA 4 cut(s) 372, 439, 542, 656
Hpy166II GTNNAC 2 cut(s) 599, 774
Hpy188I TCNGA 4 cut(s) 188, 346, 546, 564
Hpy188III TCNNGA 7 cut(s) 88, 265, 375, 394, 400, 473, 668
Hpy8I GTNNAC 2 cut(s) 599, 774
Hpy99I CGWCG 1 cut(s) 762
HpyAV CCTTC 2 cut(s) 80, 94
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4V TGCA 6 cut(s) 234, 309, 321, 481, 576, 630
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 312, 763
HpyF3I CTNAG 1 cut(s) 686
Hsp92II CATG 3 cut(s) 268, 330, 388
HspAI GCGC 3 cut(s) 67, 764, 822
Kzo9I GATC 3 cut(s) 377, 396, 541
Lsp1109I GCAGC 5 cut(s) 204, 229, 293, 493, 703
MaeI CTAG 4 cut(s) 176, 458, 485, 747
MaeIII GTNAC 1 cut(s) 530
MalI GATC 3 cut(s) 379, 398, 543
MboI GATC 3 cut(s) 377, 396, 541
MboII GAAGA 1 cut(s) 292
MluCI AATT 4 cut(s) 8, 421, 437, 510
MmeI TCCRAC 3 cut(s) 369, 569, 679
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 681, 741
MspA1I CMGCKG 1 cut(s) 306
MspI CCGG 2 cut(s) 241, 675
MspR9I CCNGG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 280
MvnI CGCG 1 cut(s) 757
MwoI GCNNNNNNNGC 3 cut(s) 66, 312, 763
NcoI CCATGG 1 cut(s) 384
NdeII GATC 3 cut(s) 377, 396, 541
NlaIII CATG 3 cut(s) 268, 330, 388
NmuCI GTSAC 1 cut(s) 530
PagI TCATGA 1 cut(s) 264
PaqCI CACCTGC 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 4 cut(s) 4, 157, 237, 390
PinAI ACCGGT 1 cut(s) 674
PkrI GCNGC 5 cut(s) 194, 219, 308, 483, 718
PpuMI RGGWCCY 1 cut(s) 227
Psp5II RGGWCCY 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspPI GGNCC 3 cut(s) 227, 470, 599
PspPPI RGGWCCY 1 cut(s) 227
PstI CTGCAG 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 306
RsaI GTAC 3 cut(s) 731, 738, 773
RsaNI GTAC 3 cut(s) 730, 737, 772
SaqAI TTAA 2 cut(s) 681, 741
SatI GCNGC 5 cut(s) 193, 218, 307, 482, 717
Sau3AI GATC 3 cut(s) 377, 396, 541
Sau96I GGNCC 3 cut(s) 227, 470, 599
ScrFI CCNGG 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 3 cut(s) 227, 470, 599
Sse9I AATT 4 cut(s) 8, 421, 437, 510
SspMI CTAG 4 cut(s) 176, 458, 485, 747
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 1 cut(s) 550
TasI AATT 4 cut(s) 8, 421, 437, 510
TatI WGTACW 2 cut(s) 729, 771
TfiI GAWTC 4 cut(s) 4, 157, 237, 390
Tru1I TTAA 2 cut(s) 681, 741
Tru9I TTAA 2 cut(s) 681, 741
TseFI GTSAC 1 cut(s) 530
TseI GCWGC 5 cut(s) 192, 217, 306, 481, 716
Tsp45I GTSAC 1 cut(s) 530
TspDTI ATGAA 4 cut(s) 17, 170, 281, 640
TspGWI ACGGA 1 cut(s) 594
VpaK11BI GGWCC 3 cut(s) 227, 470, 599
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 4 cut(s) 176, 458, 485, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.