Rh4DG221700

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000298
Physical Location & Seq
Forward (+)
42351779 .. 42353701
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG221700.1

Sequence Viewer

Length: 1038 bp
ATGGCAACCCAAAGGTCCCTGCAGATTCCAACAGCTTCCACAGGCTTTAGTCATACACATTCTCTCAAGGCTCTTGGTCAAGACCCTCTTCAACTGCAGGTGCATATGCAAATCTTGCCTTTCCATTATTTCCGACCCTCATTTTTCCCACATGCGCCTTTCGAAGTTACCCATTGGGATACTGATCAAGACGCGCGAGACCCGAAATGCAATGGTTTGCTTCTTTTGTCCGGCGCTGGGCCAATAAGAGATGGCCCATTTGTCGCAACCAAGGAATACAAGTTGCTGCAAACATGCAGCGGCGACGACCGCACCGATGAGAATGAGGCTCAGATATACACAATTGGTTCGGGAGTTTGGAAAAGCATTGGGAAAACTCCTCAGGACTCTGCCCAGTTAGCACCATTCAATGCTGTTCTGCATGGAGCTCTTCATTGGCTTTCCTTTGGTGGAAGAACATTTGAGTTCATAGATGCATTTAACTTTGGAACAGAACAGTTCCGCACACTACCCCCACCTGGTTACTTTGAACCATTTGAGAAGCTATTTAAAGAATGTCTGAAATTGGGAGTGTTAGATGGTTATCTGTTTTTATGTGTGTGTGGTGATGATCCTAGAAAATTTGACATGTGGATTATGAAGGATTATGGTGTCCAAGAGTCTTGGACGAAAACTCTGGTTGTTGAAGGCTTGTATCTACCAACGGAACTTGCCAATGATGTTTATGAACCACTGGTGTTTTTGAGAAATGGGGACATCCTGTTGTGCTACAATGACTGGATTGTGGTTTGTTATAACCAAGGAACAAAGAGTCTCAGGGAAACTAGAGTTGCTCGGACTCGGTCACATTTTCGTGCAATTGGTTACAACCCATGCTTTTTCTCTCTCCATGATGTTGCAAAAGGAGAGGAGGTGAAAAGGGTAAGAGACAAAAAGAACTCCAAGAAGCCCTTTGGTGAAGGGAGTAGTGGTTGTGCCGATTCTGGCATCCCCCAGAAGTCCAAAAAACTTAACTCAGGCTCTGGATTGCCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

345

Amino Acids

38.75

Weight (kDa)

6.79

Isoelectric Point (pI)

31.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 91 - 258 1.6e-13 F-box associated beta propeller domain
FBA_3 PF08268 91 - 283 1.8e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 795
AarI CACCTGC 1 cut(s) 88
Acc36I ACCTGC 1 cut(s) 88
AccII CGCG 2 cut(s) 194, 196
AciI CCGC 3 cut(s) 300, 310, 502
AclWI GGATC 1 cut(s) 605
AcsI RAATTY 1 cut(s) 620
AfiI CCNNNNNNNGG 2 cut(s) 237, 518
AflIII ACRYGT 1 cut(s) 627
AgsI TTSAA 4 cut(s) 92, 409, 530, 686
AjnI CCWGG 1 cut(s) 517
AluBI AGCT 3 cut(s) 35, 428, 544
AluI AGCT 3 cut(s) 35, 428, 544
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 3 cut(s) 192, 818, 921
AlwI GGATC 1 cut(s) 605
AlwNI CAGNNNCTG 1 cut(s) 1022
AoxI GGCC 2 cut(s) 239, 253
ApeKI GCWGC 2 cut(s) 286, 297
ApoI RAATTY 1 cut(s) 620
AspLEI GCGC 3 cut(s) 157, 196, 236
AspS9I GGNCC 3 cut(s) 15, 239, 254
AsuHPI GGTGA 3 cut(s) 617, 925, 968
AsuII TTCGAA 1 cut(s) 162
AvaII GGWCC 1 cut(s) 15
AxyI CCTNAGG 1 cut(s) 381
BanII GRGCYC 1 cut(s) 430
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 2 cut(s) 273, 309
BccI CCATC 2 cut(s) 245, 572
BciT130I CCWGG 1 cut(s) 519
BciVI GTATCC 1 cut(s) 172
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 3 cut(s) 192, 818, 921
BfaI CTAG 2 cut(s) 615, 825
BfmI CTRYAG 2 cut(s) 20, 95
BfoI RGCGCY 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 88
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 3 cut(s) 287, 298, 301
BlsI GCNGC 3 cut(s) 288, 299, 302
Bme1390I CCNGG 1 cut(s) 519
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 3 cut(s) 15, 239, 254
BmiI GGNNCC 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 519
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 2 cut(s) 463, 996
BmuI ACTGGG 1 cut(s) 388
Bpu14I TTCGAA 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 50
BsaBI GATNNNNATC 2 cut(s) 183, 582
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 270, 799
BsaXI ACNNNNNCTCC 4 cut(s) 897, 927, 955, 985
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 518
Bse1I ACTGG 3 cut(s) 394, 738, 782
Bse21I CCTNAGG 1 cut(s) 381
Bse3DI GCAATG 1 cut(s) 217
Bse8I GATNNNNATC 2 cut(s) 183, 582
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 2 cut(s) 270, 799
BseGI GGATG 2 cut(s) 756, 987
BseJI GATNNNNATC 2 cut(s) 183, 582
BseLI CCNNNNNNNGG 2 cut(s) 237, 518
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 4 cut(s) 344, 395, 829, 1029
BseNI ACTGG 3 cut(s) 394, 738, 782
BseRI GAGGAG 2 cut(s) 369, 923
BseXI GCAGC 2 cut(s) 273, 309
BseYI CCCAGC 1 cut(s) 236
Bsh1236I CGCG 2 cut(s) 194, 196
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 2 cut(s) 241, 255
BsiEI CGRYCG 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 767
BslI CCNNNNNNNGG 2 cut(s) 237, 518
BsmAI GTCTC 3 cut(s) 192, 818, 921
BsmFI GGGAC 1 cut(s) 767
BsnI GGCC 2 cut(s) 241, 255
Bso31I GGTCTC 1 cut(s) 192
Bsp119I TTCGAA 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 2 cut(s) 184, 610
BspACI CCGC 3 cut(s) 300, 310, 502
BspANI GGCC 2 cut(s) 241, 255
BspCNI CTCAG 4 cut(s) 343, 394, 828, 1028
BspFNI CGCG 2 cut(s) 194, 196
BspLI GGNNCC 1 cut(s) 17
BspMAI CTGCAG 2 cut(s) 24, 99
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 1 cut(s) 605
BspQI GCTCTTC 1 cut(s) 435
BspT104I TTCGAA 1 cut(s) 162
BspTNI GGTCTC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 217
BsrI ACTGG 3 cut(s) 394, 738, 782
BssECI CCNNGG 2 cut(s) 270, 799
BssMI GATC 2 cut(s) 184, 610
BssT1I CCWWGG 2 cut(s) 270, 799
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 1 cut(s) 498
Bst6I CTCTTC 2 cut(s) 93, 435
BstAPI GCANNNNNTGC 1 cut(s) 115
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 1032
BstDEI CTNAG 4 cut(s) 330, 381, 815, 1015
BstF5I GGATG 2 cut(s) 756, 987
BstFNI CGCG 2 cut(s) 194, 196
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 3 cut(s) 157, 196, 236
BstKTI GATC 2 cut(s) 187, 613
BstMAI GTCTC 3 cut(s) 192, 818, 921
BstMBI GATC 2 cut(s) 184, 610
BstMCI CGRYCG 1 cut(s) 310
BstMWI GCNNNNNNNGC 3 cut(s) 115, 309, 398
BstNI CCWGG 1 cut(s) 519
BstNSI RCATGY 3 cut(s) 155, 297, 631
BstSCI CCNGG 1 cut(s) 517
BstSFI CTRYAG 2 cut(s) 20, 95
BstUI CGCG 2 cut(s) 194, 196
BstV1I GCAGC 2 cut(s) 273, 309
Bsu36I CCTNAGG 1 cut(s) 381
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 2 cut(s) 241, 255
BtsCI GGATG 2 cut(s) 756, 987
BtsIMutI CAGTG 1 cut(s) 731
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 1032
CaiI CAGNNNCTG 1 cut(s) 1022
CfoI GCGC 3 cut(s) 157, 196, 236
Cfr13I GGNCC 3 cut(s) 15, 239, 254
CseI GACGC 1 cut(s) 200
CsiI ACCWGGT 1 cut(s) 517
CviAII CATG 6 cut(s) 152, 294, 422, 628, 873, 890
DdeI CTNAG 4 cut(s) 330, 381, 815, 1015
DpnI GATC 2 cut(s) 186, 612
DpnII GATC 2 cut(s) 184, 610
DraI TTTAAA 1 cut(s) 550
Eam1104I CTCTTC 2 cut(s) 93, 435
EarI CTCTTC 2 cut(s) 93, 435
Ecl136II GAGCTC 1 cut(s) 428
Eco130I CCWWGG 2 cut(s) 270, 799
Eco24I GRGCYC 1 cut(s) 430
Eco31I GGTCTC 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 428
Eco81I CCTNAGG 1 cut(s) 381
EcoICRI GAGCTC 1 cut(s) 428
EcoO109I RGGNCCY 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 2 cut(s) 270, 799
EcoT22I ATGCAT 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 430
ErhI CCWWGG 2 cut(s) 270, 799
FaeI CATG 6 cut(s) 155, 297, 425, 631, 876, 893
FalI AAGNNNNNCTT 4 cut(s) 72, 104, 935, 967
FaqI GGGAC 1 cut(s) 767
FatI CATG 6 cut(s) 151, 293, 421, 627, 872, 889
FauNDI CATATG 1 cut(s) 105
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 3 cut(s) 287, 298, 301
FokI GGATG 2 cut(s) 743, 974
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 3 cut(s) 287, 298, 301
FspBI CTAG 2 cut(s) 615, 825
GlaI GCGC 3 cut(s) 156, 195, 235
GluI GCNGC 3 cut(s) 287, 298, 301
GsaI CCCAGC 1 cut(s) 240
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 2 cut(s) 241, 255
HapII CCGG 1 cut(s) 231
HgaI GACGC 1 cut(s) 200
HhaI GCGC 3 cut(s) 157, 196, 236
Hin1II CATG 6 cut(s) 155, 297, 425, 631, 876, 893
Hin6I GCGC 3 cut(s) 155, 194, 234
HinP1I GCGC 3 cut(s) 155, 194, 234
HinfI GANTC 6 cut(s) 25, 386, 659, 811, 838, 980
HpaII CCGG 1 cut(s) 231
HphI GGTGA 3 cut(s) 617, 925, 968
Hpy188I TCNGA 4 cut(s) 134, 333, 561, 837
Hpy188III TCNNGA 5 cut(s) 80, 188, 351, 383, 1023
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 3 cut(s) 634, 680, 953
HpyCH4III ACNGT 1 cut(s) 498
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 309, 398
HpyF3I CTNAG 4 cut(s) 330, 381, 815, 1015
Hsp92II CATG 6 cut(s) 155, 297, 425, 631, 876, 893
HspAI GCGC 3 cut(s) 155, 194, 234
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 184, 610
LguI GCTCTTC 1 cut(s) 435
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 2 cut(s) 273, 309
LweI GCATC 2 cut(s) 463, 996
MabI ACCWGGT 1 cut(s) 517
MaeI CTAG 2 cut(s) 615, 825
MaeIII GTNAC 4 cut(s) 166, 521, 843, 863
MalI GATC 2 cut(s) 186, 612
MboI GATC 2 cut(s) 184, 610
MboII GAAGA 3 cut(s) 80, 422, 465
MfeI CAATTG 2 cut(s) 342, 858
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 4 cut(s) 342, 563, 620, 858
MlyI GAGTC 4 cut(s) 380, 668, 820, 832
MmeI TCCRAC 2 cut(s) 53, 157
MnlI CCTC 6 cut(s) 96, 148, 319, 390, 901, 904
Mph1103I ATGCAT 1 cut(s) 478
MseI TTAA 4 cut(s) 480, 549, 1011, 1036
MslI CAYNNNNRTG 1 cut(s) 852
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 519
MunI CAATTG 2 cut(s) 342, 858
MvaI CCWGG 1 cut(s) 519
MvnI CGCG 2 cut(s) 194, 196
MwoI GCNNNNNNNGC 3 cut(s) 115, 309, 398
NdeI CATATG 1 cut(s) 105
NdeII GATC 2 cut(s) 184, 610
NlaIII CATG 6 cut(s) 155, 297, 425, 631, 876, 893
NlaIV GGNNCC 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 843
NsiI ATGCAT 1 cut(s) 478
NspI RCATGY 3 cut(s) 155, 297, 631
NspV TTCGAA 1 cut(s) 162
PaqCI CACCTGC 1 cut(s) 88
PciI ACATGT 1 cut(s) 627
PciSI GCTCTTC 1 cut(s) 435
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PfeI GAWTC 2 cut(s) 25, 980
PflFI GACNNNGTC 1 cut(s) 841
PkrI GCNGC 3 cut(s) 288, 299, 302
PleI GAGTC 4 cut(s) 380, 667, 819, 832
PpsI GAGTC 4 cut(s) 380, 667, 819, 832
PpuMI RGGWCCY 1 cut(s) 15
PscI ACATGT 1 cut(s) 627
PsiI TTATAA 1 cut(s) 795
Psp124BI GAGCTC 1 cut(s) 430
Psp5II RGGWCCY 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 517
PspFI CCCAGC 1 cut(s) 236
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 1 cut(s) 17
PspPI GGNCC 3 cut(s) 15, 239, 254
PspPPI RGGWCCY 1 cut(s) 15
PstI CTGCAG 2 cut(s) 24, 99
PstNI CAGNNNCTG 1 cut(s) 1022
PsyI GACNNNGTC 1 cut(s) 841
RseI CAYNNNNRTG 1 cut(s) 852
SacI GAGCTC 1 cut(s) 430
SapI GCTCTTC 1 cut(s) 435
SaqAI TTAA 4 cut(s) 480, 549, 1011, 1036
SatI GCNGC 3 cut(s) 287, 298, 301
Sau3AI GATC 2 cut(s) 184, 610
Sau96I GGNCC 3 cut(s) 15, 239, 254
SchI GAGTC 4 cut(s) 380, 668, 820, 832
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 1 cut(s) 430
SetI ASST 7 cut(s) 17, 37, 102, 430, 520, 546, 915
SexAI ACCWGGT 1 cut(s) 517
SfaNI GCATC 2 cut(s) 463, 996
SfcI CTRYAG 2 cut(s) 20, 95
SfuI TTCGAA 1 cut(s) 162
SinI GGWCC 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 852
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 4 cut(s) 342, 563, 620, 858
SsiI CCGC 3 cut(s) 300, 310, 502
SspMI CTAG 2 cut(s) 615, 825
SstI GAGCTC 1 cut(s) 430
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 2 cut(s) 270, 799
TaaI ACNGT 1 cut(s) 498
TaqI TCGA 1 cut(s) 162
TaqII GACCGA 1 cut(s) 831
TasI AATT 4 cut(s) 342, 563, 620, 858
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 2 cut(s) 25, 980
Tru1I TTAA 4 cut(s) 480, 549, 1011, 1036
Tru9I TTAA 4 cut(s) 480, 549, 1011, 1036
TscAI CASTG 1 cut(s) 738
TseFI GTSAC 1 cut(s) 843
TseI GCWGC 2 cut(s) 286, 297
Tsp45I GTSAC 1 cut(s) 843
TspDTI ATGAA 4 cut(s) 422, 457, 653, 741
TspGWI ACGGA 1 cut(s) 719
TspRI CASTG 1 cut(s) 738
Tth111I GACNNNGTC 1 cut(s) 841
VpaK11BI GGWCC 1 cut(s) 15
XapI RAATTY 1 cut(s) 620
XceI RCATGY 3 cut(s) 155, 297, 631
XspI CTAG 2 cut(s) 615, 825
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.