Rh4BG338700

peptide-methionine (R)-S-oxide reductase activity

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
50127608 .. 50128800
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG338700.1

Sequence Viewer

Length: 351 bp
ATGGTGTGGAAGAGTCTTGGACAAAAACTCTTGTTTTTGAAGGCTTGTATCCACCACCAGAACTCGATCAACAATGATGCTTATGAACCGCTGGTGTTTTTGAGGAATGGGGACATCCTATTGTCCTACAATGATCAGATTATGGTTTGTTATAATCAAGGAAGAAAGAGTCTCAGGAAAGCTAGAGTTACCCGGACTAAGTTGAGTTTTCGTGCAATTGGTTACAATCCATCCTTTGTTTCACTCAGTCATGTTGCAAAAGGAGAGGATGTGAAAAGGGTAAGAAACAAAAAGAAATCCATTGGGGTAGGGAGTAGTGGTTGTGCTGGTTCTGTCATGCCACGCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

13.04

Weight (kDa)

10.3

Isoelectric Point (pI)

29.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
AciI CCGC 1 cut(s) 89
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 1 cut(s) 176
AsuC2I CCSGG 1 cut(s) 193
BccI CCATC 1 cut(s) 238
BciVI GTATCC 1 cut(s) 59
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 1 cut(s) 183
BfuI GTATCC 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 193
BmsI GCATC 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 193
BsaXI ACNNNNNCTCC 4 cut(s) 255, 285, 304, 334
BseGI GGATG 3 cut(s) 114, 230, 274
BseMII CTCAG 2 cut(s) 187, 259
BsiSI CCGG 1 cut(s) 193
BslFI GGGAC 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 125
Bsp143I GATC 2 cut(s) 66, 133
BspACI CCGC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 186, 258
BssMI GATC 2 cut(s) 66, 133
Bst6I CTCTTC 1 cut(s) 5
BstDEI CTNAG 3 cut(s) 173, 198, 245
BstF5I GGATG 3 cut(s) 114, 230, 274
BstKTI GATC 2 cut(s) 69, 136
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 2 cut(s) 66, 133
BstSCI CCNGG 1 cut(s) 191
BsuI GTATCC 1 cut(s) 59
BtsCI GGATG 3 cut(s) 114, 230, 274
CviAII CATG 2 cut(s) 251, 337
CviJI RGCY 2 cut(s) 44, 182
CviKI_1 RGCY 2 cut(s) 44, 182
DdeI CTNAG 3 cut(s) 173, 198, 245
DpnI GATC 2 cut(s) 68, 135
DpnII GATC 2 cut(s) 66, 133
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
FaeI CATG 2 cut(s) 254, 340
FaiI YATR 5 cut(s) 84, 143, 153, 252, 338
FaqI GGGAC 1 cut(s) 125
FatI CATG 2 cut(s) 250, 336
FbaI TGATCA 1 cut(s) 133
FokI GGATG 3 cut(s) 101, 217, 281
FspBI CTAG 1 cut(s) 183
HapII CCGG 1 cut(s) 193
Hin1II CATG 2 cut(s) 254, 340
HinfI GANTC 2 cut(s) 13, 169
HpaII CCGG 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 34
HpyCH4V TGCA 2 cut(s) 215, 257
HpyF3I CTNAG 3 cut(s) 173, 198, 245
Hsp92II CATG 2 cut(s) 254, 340
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 2 cut(s) 66, 133
LpnPI CCDG 5 cut(s) 71, 77, 160, 206, 312
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 187, 221
MalI GATC 2 cut(s) 68, 135
MboI GATC 2 cut(s) 66, 133
MboII GAAGA 2 cut(s) 22, 174
MfeI CAATTG 1 cut(s) 216
MluCI AATT 1 cut(s) 216
MlyI GAGTC 2 cut(s) 22, 178
MnlI CCTC 2 cut(s) 96, 259
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 193
MunI CAATTG 1 cut(s) 216
NciI CCSGG 1 cut(s) 193
NdeII GATC 2 cut(s) 66, 133
NlaIII CATG 2 cut(s) 254, 340
PleI GAGTC 2 cut(s) 21, 177
PpsI GAGTC 2 cut(s) 21, 177
PsiI TTATAA 1 cut(s) 153
Sau3AI GATC 2 cut(s) 66, 133
SchI GAGTC 2 cut(s) 22, 178
ScrFI CCNGG 1 cut(s) 193
SetI ASST 1 cut(s) 184
SfaNI GCATC 1 cut(s) 67
Sse9I AATT 1 cut(s) 216
SsiI CCGC 1 cut(s) 89
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 191
TaqI TCGA 1 cut(s) 65
TasI AATT 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 99
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.