MD03G1174100.v1.1

peptide-methionine (R)-S-oxide reductase activity

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
23829147 .. 23832196
3050 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1174100.v1.1.491

Sequence Viewer

Length: 1392 bp
ATGCTGAGAGGAAATCAAGGAAACCCTAATCAGAATCCTAGGACACAAAATACAAACAGAGCAGTGATGGGCATCAAATTTCAATATCTTCCCAAGGGTTTGGTGGTGGACATTCTCTCAAGGATAGTCTGCGTCAAGACCGTCTTGAACTGCAAGTGCGTTTGCAAAGAGTGGCTTTCTATAATTTCTGACCCTCAATTTGCTCGTCTCCATCTTCCGAGATCACCCATTGGGATCTTGATGAAGGAATGGCACCTTGATAATGATTGGATAGCGGGAAAACTTGATTTTGCCCAGATAGTAGAAGGTGCTGGTTCTGATTTGGGGGTCGAGAAAACGACTTTAACTCCTAATAATAGCCTGCCCAATTTTCGGTTCGAGTTGATAAACTCATGTAACGGTTTACTTTGTTTGTATGGGCCGGAGACTGATTGCCTGTATGTGTGCAACCCTGTGTTGGGTGAGTGCATCACAATTCCACATAATAGTAATGGCAGGCATCGGTGCGGGTTTATTGCACTTGGTTACAGCATTGGGACCAATGATTACAAGGTGTTGCAAACAACCTTATCTAACAACGAATTCTATGGTGAGCGTGAGGCTGAGATATACACCCTTGGCACTGGAGTTTGGAGAAGCATTGGAAGTGTTCCTCAAACTATACTTAAGAGATATAGAGACGCAGCAATTGAGTTACCATTTGAAGGTTTTCTGCACGGAGCTCAACATTGGGCTCCGTATGACTTGTCAGAGTTTTCTATATATTCTTTCAATTTTGAAAGAGAACAATTTCGATTGCTACCCCCACCTACACTCTCACCTGGGCTGTTGGAAGAAATGCAGAAGTGGTATTCAAAGTATTTACACTTGGGACAGTTAGAAGGTTGTCTCCTTCTATGTGTGCAGGATAAACCGTCTACCAACTTAGAGTTGTGGGTTATGAAGGAATATGGGGTCCAGCAGTCTTGGACTAAAATTCTTGTCATTGATAACTTGACCCCAAAATCTTTCGGGTACATGCCAATTATGTTTTTGAGTAATCGAGAAATCCTAATAGCATACGTGGAAGAACAAAACAACGGCAGTGGCAGCCGGCTTGTTGGTTGTTTCAATCAAGAAGCAAAAACTTTCAGCCGAACTACAGTTACTGATCACACCCAGGAATTTTTTCATGCAATTGCTTACAGTCCATCCTTTGTTTCACTCTACGATGTTGCAAAAGGAGAAGAAGTGGAAAGGATAAGAGATAGCAACAAGCCGATTGGTAAACCGAGTTATGATCGTTCCGGTTTTGGGATGCCAACCCACGTGTACTCTTTTGACTTAAGACGGCGTGCTTTTGATGGTTGGTTCTTCCAAAATTCATATATGAATCACTTTTGTTATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

464

Amino Acids

52.83

Weight (kDa)

6.43

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 114 - 401 6.8e-27 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 117 - 271 2.1e-06 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 120 - 388 9e-20 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 917
AciI CCGC 2 cut(s) 275, 507
AclWI GGATC 1 cut(s) 242
AcsI RAATTY 5 cut(s) 77, 581, 975, 1163, 1360
AcvI CACGTG 1 cut(s) 1309
AfaI GTAC 2 cut(s) 1016, 1313
AfiI CCNNNNNNNGG 5 cut(s) 372, 457, 458, 704, 1293
AflII CTTAAG 2 cut(s) 665, 1324
AflIII ACRYGT 1 cut(s) 1308
AgsI TTSAA 7 cut(s) 83, 148, 704, 772, 779, 855, 1111
AjnI CCWGG 2 cut(s) 820, 1158
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AluBI AGCT 1 cut(s) 722
AluI AGCT 1 cut(s) 722
Alw21I GWGCWC 1 cut(s) 724
Alw26I GTCTC 4 cut(s) 212, 419, 672, 893
AlwI GGATC 1 cut(s) 242
AlwNI CAGNNNCTG 1 cut(s) 1148
AoxI GGCC 1 cut(s) 419
ApeKI GCWGC 2 cut(s) 683, 1089
ApoI RAATTY 5 cut(s) 77, 581, 975, 1163, 1360
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
Asp700I GAANNNNTTC 3 cut(s) 708, 789, 1167
AspA2I CCTAGG 1 cut(s) 38
AspS9I GGNCC 3 cut(s) 419, 537, 955
AsuHPI GGTGA 4 cut(s) 216, 473, 602, 810
AvaII GGWCC 2 cut(s) 537, 955
AvrII CCTAGG 1 cut(s) 38
BanI GGYRCC 1 cut(s) 252
BanII GRGCYC 2 cut(s) 724, 736
BbrPI CACGTG 1 cut(s) 1309
Bbv12I GWGCWC 1 cut(s) 724
BbvI GCAGC 2 cut(s) 695, 1101
BccI CCATC 4 cut(s) 61, 219, 1198, 1337
BceAI ACGGC 2 cut(s) 1096, 1346
BciT130I CCWGG 2 cut(s) 822, 1160
BclI TGATCA 1 cut(s) 1150
BcoDI GTCTC 4 cut(s) 212, 419, 672, 893
BfaI CTAG 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 1140
BfrI CTTAAG 2 cut(s) 665, 1324
BisI GCNGC 2 cut(s) 684, 1090
BlnI CCTAGG 1 cut(s) 38
BlsI GCNGC 2 cut(s) 685, 1091
Bme1390I CCNGG 2 cut(s) 822, 1160
Bme18I GGWCC 2 cut(s) 537, 955
BmgT120I GGNCC 3 cut(s) 419, 537, 955
BmiI GGNNCC 4 cut(s) 254, 538, 735, 956
BmrFI CCNGG 2 cut(s) 822, 1160
BmsI GCATC 4 cut(s) 81, 477, 508, 1287
BpmI CTGGAG 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 103
BsaAI YACGTR 2 cut(s) 1063, 1309
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 5 cut(s) 38, 93, 616, 821, 1158
BsaWI WCCGGW 1 cut(s) 1286
BsaXI ACNNNNNCTCC 4 cut(s) 331, 361, 1215, 1245
Bsc4I CCNNNNNNNGG 5 cut(s) 372, 457, 458, 704, 1293
Bse118I RCCGGY 1 cut(s) 1092
Bse1I ACTGG 1 cut(s) 628
Bse8I GATNNNNATC 1 cut(s) 71
BseBI CCWGG 2 cut(s) 822, 1160
BseDI CCNNGG 5 cut(s) 38, 93, 616, 821, 1158
BseGI GGATG 2 cut(s) 1190, 1302
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 5 cut(s) 372, 457, 458, 704, 1293
BseMII CTCAG 1 cut(s) 594
BseNI ACTGG 1 cut(s) 628
BseXI GCAGC 2 cut(s) 695, 1101
BsgI GTGCAG 2 cut(s) 698, 923
BshFI GGCC 1 cut(s) 421
BshNI GGYRCC 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 724
BsiSI CCGG 3 cut(s) 422, 1093, 1287
BslFI GGGAC 2 cut(s) 550, 885
BslI CCNNNNNNNGG 5 cut(s) 372, 457, 458, 704, 1293
BsmAI GTCTC 4 cut(s) 212, 419, 672, 893
BsmBI CGTCTC 2 cut(s) 212, 672
BsmFI GGGAC 2 cut(s) 550, 885
BsnI GGCC 1 cut(s) 421
Bsp1286I GDGCHC 2 cut(s) 724, 736
Bsp143I GATC 4 cut(s) 221, 234, 1150, 1279
BspACI CCGC 2 cut(s) 275, 507
BspANI GGCC 1 cut(s) 421
BspCNI CTCAG 1 cut(s) 595
BspLI GGNNCC 4 cut(s) 254, 538, 735, 956
BspPI GGATC 1 cut(s) 242
BspT107I GGYRCC 1 cut(s) 252
BspTI CTTAAG 2 cut(s) 665, 1324
BsrFI RCCGGY 1 cut(s) 1092
BsrI ACTGG 1 cut(s) 628
BssAI RCCGGY 1 cut(s) 1092
BssECI CCNNGG 5 cut(s) 38, 93, 616, 821, 1158
BssMI GATC 4 cut(s) 221, 234, 1150, 1279
BssT1I CCWWGG 3 cut(s) 38, 93, 616
Bst2UI CCWGG 2 cut(s) 822, 1160
Bst4CI ACNGT 6 cut(s) 142, 401, 876, 915, 1144, 1187
BstAFI CTTAAG 2 cut(s) 665, 1324
BstBAI YACGTR 2 cut(s) 1063, 1309
BstC8I GCNNGC 4 cut(s) 362, 497, 1094, 1335
BstDEI CTNAG 3 cut(s) 5, 603, 925
BstF5I GGATG 2 cut(s) 1190, 1302
BstKTI GATC 4 cut(s) 224, 237, 1153, 1282
BstMAI GTCTC 4 cut(s) 212, 419, 672, 893
BstMBI GATC 4 cut(s) 221, 234, 1150, 1279
BstMWI GCNNNNNNNGC 1 cut(s) 1089
BstNI CCWGG 2 cut(s) 822, 1160
BstNSI RCATGY 1 cut(s) 1021
BstSCI CCNGG 2 cut(s) 820, 1158
BstSFI CTRYAG 1 cut(s) 1140
BstV1I GCAGC 2 cut(s) 695, 1101
BstX2I RGATCY 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 1 cut(s) 234
BsuRI GGCC 1 cut(s) 421
BtsCI GGATG 2 cut(s) 1190, 1302
BtsI GCAGTG 2 cut(s) 69, 1090
BtsIMutI CAGTG 3 cut(s) 69, 621, 1090
Cac8I GCNNGC 4 cut(s) 362, 497, 1094, 1335
CaiI CAGNNNCTG 1 cut(s) 1148
Cfr10I RCCGGY 1 cut(s) 1092
Cfr13I GGNCC 3 cut(s) 419, 537, 955
CseI GACGC 2 cut(s) 121, 689
Csp6I GTAC 2 cut(s) 1015, 1312
CspCI CAANNNNNGTGG 2 cut(s) 1066, 1101
CviAII CATG 3 cut(s) 393, 1018, 1172
CviQI GTAC 2 cut(s) 1015, 1312
DdeI CTNAG 3 cut(s) 5, 603, 925
DpnI GATC 4 cut(s) 223, 236, 1152, 1281
DpnII GATC 4 cut(s) 221, 234, 1150, 1279
Ecl136II GAGCTC 1 cut(s) 722
Eco130I CCWWGG 3 cut(s) 38, 93, 616
Eco24I GRGCYC 2 cut(s) 724, 736
Eco47I GGWCC 2 cut(s) 537, 955
Eco53kI GAGCTC 1 cut(s) 722
Eco72I CACGTG 1 cut(s) 1309
EcoICRI GAGCTC 1 cut(s) 722
EcoRI GAATTC 1 cut(s) 581
EcoRII CCWGG 2 cut(s) 820, 1158
EcoT14I CCWWGG 3 cut(s) 38, 93, 616
EcoT38I GRGCYC 2 cut(s) 724, 736
ErhI CCWWGG 3 cut(s) 38, 93, 616
Esp3I CGTCTC 2 cut(s) 212, 672
FaeI CATG 3 cut(s) 396, 1021, 1175
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 159, 191
FaqI GGGAC 2 cut(s) 550, 885
FatI CATG 3 cut(s) 392, 1017, 1171
FauI CCCGC 2 cut(s) 268, 500
FbaI TGATCA 1 cut(s) 1150
FblI GTMKAC 1 cut(s) 917
Fnu4HI GCNGC 2 cut(s) 684, 1090
FokI GGATG 2 cut(s) 1177, 1309
FriOI GRGCYC 2 cut(s) 724, 736
Fsp4HI GCNGC 2 cut(s) 684, 1090
FspBI CTAG 1 cut(s) 39
GluI GCNGC 2 cut(s) 684, 1090
GsuI CTGGAG 1 cut(s) 645
HaeIII GGCC 1 cut(s) 421
HapII CCGG 3 cut(s) 422, 1093, 1287
HgaI GACGC 2 cut(s) 121, 689
Hin1II CATG 3 cut(s) 396, 1021, 1175
HinfI GANTC 2 cut(s) 34, 1372
HpaII CCGG 3 cut(s) 422, 1093, 1287
HphI GGTGA 4 cut(s) 216, 473, 602, 810
Hpy166II GTNNAC 5 cut(s) 109, 404, 918, 1268, 1312
Hpy188I TCNGA 5 cut(s) 33, 190, 219, 319, 751
Hpy188III TCNNGA 6 cut(s) 136, 145, 238, 331, 1043, 1115
Hpy8I GTNNAC 5 cut(s) 109, 404, 918, 1268, 1312
HpyAV CCTTC 6 cut(s) 238, 299, 698, 875, 902, 937
HpyCH4III ACNGT 6 cut(s) 142, 401, 876, 915, 1144, 1187
HpyCH4IV ACGT 2 cut(s) 1062, 1308
HpyF10VI GCNNNNNNNGC 1 cut(s) 1089
HpyF3I CTNAG 3 cut(s) 5, 603, 925
HpySE526I ACGT 2 cut(s) 1062, 1308
Hsp92II CATG 3 cut(s) 396, 1021, 1175
KroI GCCGGC 1 cut(s) 1092
KroNI GCCGGC 1 cut(s) 1094
Ksp22I TGATCA 1 cut(s) 1150
Kzo9I GATC 4 cut(s) 221, 234, 1150, 1279
LmnI GCTCC 2 cut(s) 719, 739
Lsp1109I GCAGC 2 cut(s) 695, 1101
LweI GCATC 4 cut(s) 81, 477, 508, 1287
MaeI CTAG 1 cut(s) 39
MaeII ACGT 2 cut(s) 1062, 1308
MaeIII GTNAC 4 cut(s) 395, 524, 693, 1144
MalI GATC 4 cut(s) 223, 236, 1152, 1281
MboI GATC 4 cut(s) 221, 234, 1150, 1279
MboII GAAGA 6 cut(s) 80, 206, 845, 1079, 1238, 1345
MfeI CAATTG 2 cut(s) 687, 1176
MflI RGATCY 1 cut(s) 234
MhlI GDGCHC 2 cut(s) 724, 736
MmeI TCCRAC 1 cut(s) 810
MnlI CCTC 3 cut(s) 204, 592, 663
MroNI GCCGGC 1 cut(s) 1092
MroXI GAANNNNTTC 3 cut(s) 708, 789, 1167
MseI TTAA 3 cut(s) 344, 666, 1325
MspCI CTTAAG 2 cut(s) 665, 1324
MspI CCGG 3 cut(s) 422, 1093, 1287
MspR9I CCNGG 2 cut(s) 822, 1160
MunI CAATTG 2 cut(s) 687, 1176
MvaI CCWGG 2 cut(s) 822, 1160
MwoI GCNNNNNNNGC 1 cut(s) 1089
NaeI GCCGGC 1 cut(s) 1094
NdeII GATC 4 cut(s) 221, 234, 1150, 1279
NgoMIV GCCGGC 1 cut(s) 1092
NlaIII CATG 3 cut(s) 396, 1021, 1175
NlaIV GGNNCC 4 cut(s) 254, 538, 735, 956
NspI RCATGY 1 cut(s) 1021
PdiI GCCGGC 1 cut(s) 1094
PdmI GAANNNNTTC 3 cut(s) 708, 789, 1167
PfeI GAWTC 2 cut(s) 34, 1372
PkrI GCNGC 2 cut(s) 685, 1091
PmaCI CACGTG 1 cut(s) 1309
PmlI CACGTG 1 cut(s) 1309
Ppu21I YACGTR 2 cut(s) 1063, 1309
Psp124BI GAGCTC 1 cut(s) 724
Psp6I CCWGG 2 cut(s) 820, 1158
PspCI CACGTG 1 cut(s) 1309
PspGI CCWGG 2 cut(s) 820, 1158
PspN4I GGNNCC 4 cut(s) 254, 538, 735, 956
PspPI GGNCC 3 cut(s) 419, 537, 955
PsrI GAACNNNNNNTAC 2 cut(s) 1129, 1161
PstNI CAGNNNCTG 1 cut(s) 1148
PsuI RGATCY 1 cut(s) 234
RsaI GTAC 2 cut(s) 1016, 1313
RsaNI GTAC 2 cut(s) 1015, 1312
SacI GAGCTC 1 cut(s) 724
SaqAI TTAA 3 cut(s) 344, 666, 1325
SatI GCNGC 2 cut(s) 684, 1090
Sau3AI GATC 4 cut(s) 221, 234, 1150, 1279
Sau96I GGNCC 3 cut(s) 419, 537, 955
ScrFI CCNGG 2 cut(s) 822, 1160
SduI GDGCHC 2 cut(s) 724, 736
SfaNI GCATC 4 cut(s) 81, 477, 508, 1287
SfcI CTRYAG 1 cut(s) 1140
SinI GGWCC 2 cut(s) 537, 955
SmlI CTYRAG 3 cut(s) 118, 665, 1324
SmoI CTYRAG 3 cut(s) 118, 665, 1324
SsiI CCGC 2 cut(s) 275, 507
SspMI CTAG 1 cut(s) 39
SstI GAGCTC 1 cut(s) 724
StyD4I CCNGG 2 cut(s) 820, 1158
StyI CCWWGG 3 cut(s) 38, 93, 616
TaaI ACNGT 6 cut(s) 142, 401, 876, 915, 1144, 1187
TaiI ACGT 2 cut(s) 1065, 1311
TaqI TCGA 4 cut(s) 330, 378, 793, 1042
TatI WGTACW 1 cut(s) 1311
TfiI GAWTC 2 cut(s) 34, 1372
Tru1I TTAA 3 cut(s) 344, 666, 1325
Tru9I TTAA 3 cut(s) 344, 666, 1325
TscAI CASTG 3 cut(s) 69, 628, 1090
TseI GCWGC 2 cut(s) 683, 1089
TspDTI ATGAA 5 cut(s) 257, 956, 1160, 1353, 1385
TspGWI ACGGA 2 cut(s) 726, 732
TspRI CASTG 3 cut(s) 69, 628, 1090
Vha464I CTTAAG 2 cut(s) 665, 1324
VpaK11BI GGWCC 2 cut(s) 537, 955
XapI RAATTY 5 cut(s) 77, 581, 975, 1163, 1360
XceI RCATGY 1 cut(s) 1021
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmaJI CCTAGG 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 917
XmnI GAANNNNTTC 3 cut(s) 708, 789, 1167
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.