Rh4DG174300

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000298
Physical Location & Seq
Reverse (-)
34696554 .. 34697369
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG174300.1

Sequence Viewer

Length: 435 bp
ATGGATAATATTTTGAGTTTGGGAGTGTTAGAAGGTTCTCTCCTTTTATGCGTCTTTCCACGGCATCGTGTACGATTTAACGGGTGGGTTATGAAGAATTACGGTGTTCAAGAGTCTTGGACTAAAGCTTTTGTTGTGGATCGAAATCCACAATTTGCCAGGACAGGTGTGTATGAACGAATTCTGTTCTTGAGCGATGGGGAAATCCTAATGAAAAGTGATTGTGGTGTGATTCGTTATAATCATGAAACTAAGAATCTTATGGAAACTAAAATAGTTCGTACTCGTCGGACCCGTATTCATGCAATTCGTTATTGGCCATCCTTTGTTTCACTCGATGATGTTTCAAAAGGAGAGGTGGTGGAAAGAGTAGGAAACAATAGGAAACTTGAGAAGAATGCTGGTGAAGGGAGTAGTGGTTGTGCTAGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

144

Amino Acids

16.45

Weight (kDa)

9.47

Isoelectric Point (pI)

20.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 240
AclWI GGATC 1 cut(s) 147
AcoI YGGCCR 1 cut(s) 317
AcsI RAATTY 1 cut(s) 180
AfaI GTAC 2 cut(s) 72, 283
AgsI TTSAA 2 cut(s) 110, 348
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AlwI GGATC 1 cut(s) 147
AoxI GGCC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 180
Asp700I GAANNNNTTC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 416
AvaII GGWCC 1 cut(s) 291
BalI TGGCCA 1 cut(s) 319
BccI CCATC 2 cut(s) 191, 328
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 160
BfaI CTAG 1 cut(s) 426
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 293
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 73
BpuEI CTTGAG 2 cut(s) 211, 410
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 59
BsaXI ACNNNNNCTCC 4 cut(s) 345, 375, 403, 433
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 320
BseJI GATNNNNATC 1 cut(s) 144
BshFI GGCC 1 cut(s) 319
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 1 cut(s) 319
Bsp143I GATC 1 cut(s) 139
BspANI GGCC 1 cut(s) 319
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 293
BspPI GGATC 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 320
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 158
BsuRI GGCC 1 cut(s) 319
BtgI CCRYGG 1 cut(s) 59
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 320
CciI TCATGA 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 291
CseI GACGC 1 cut(s) 40
Csp6I GTAC 2 cut(s) 71, 282
CviAII CATG 2 cut(s) 245, 302
CviJI RGCY 2 cut(s) 128, 319
CviKI_1 RGCY 2 cut(s) 128, 319
CviQI GTAC 2 cut(s) 71, 282
DdeI CTNAG 1 cut(s) 252
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 317
Eco47I GGWCC 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 158
FaeI CATG 2 cut(s) 248, 305
FaiI YATR 7 cut(s) 49, 92, 174, 240, 246, 263, 303
FatI CATG 2 cut(s) 244, 301
FokI GGATG 1 cut(s) 307
FspBI CTAG 1 cut(s) 426
HaeIII GGCC 1 cut(s) 319
HgaI GACGC 1 cut(s) 40
Hin1II CATG 2 cut(s) 248, 305
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 3 cut(s) 113, 232, 256
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 4 cut(s) 110, 190, 245, 432
Hpy8I GTNNAC 1 cut(s) 71
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 26, 401
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 2 cut(s) 248, 305
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 4 cut(s) 145, 150, 172, 387
LweI GCATC 1 cut(s) 73
MaeI CTAG 1 cut(s) 426
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 106, 406
MlsI TGGCCA 1 cut(s) 319
MluCI AATT 4 cut(s) 97, 152, 180, 306
MluNI TGGCCA 1 cut(s) 319
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 1 cut(s) 349
Mox20I TGGCCA 1 cut(s) 319
MroXI GAANNNNTTC 1 cut(s) 180
MscI TGGCCA 1 cut(s) 319
MseI TTAA 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 319
MspR9I CCNGG 1 cut(s) 160
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 1 cut(s) 160
NdeII GATC 1 cut(s) 139
NlaIII CATG 2 cut(s) 248, 305
NlaIV GGNNCC 1 cut(s) 293
PagI TCATGA 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 292
PctI GAATGC 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 2 cut(s) 232, 256
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PsiI TTATAA 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 293
PspPI GGNCC 1 cut(s) 291
RsaI GTAC 2 cut(s) 72, 283
RsaNI GTAC 2 cut(s) 71, 282
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 1 cut(s) 291
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 160
SetI ASST 4 cut(s) 37, 130, 169, 360
SfaNI GCATC 1 cut(s) 73
SinI GGWCC 1 cut(s) 291
SmlI CTYRAG 2 cut(s) 190, 389
SmoI CTYRAG 2 cut(s) 190, 389
Sse9I AATT 4 cut(s) 97, 152, 180, 306
SspI AATATT 1 cut(s) 10
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 104
TaqI TCGA 2 cut(s) 142, 336
TasI AATT 4 cut(s) 97, 152, 180, 306
TfiI GAWTC 2 cut(s) 232, 256
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TspDTI ATGAA 5 cut(s) 107, 189, 227, 261, 290
VpaK11BI GGWCC 1 cut(s) 291
XapI RAATTY 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.