Prupe.1G185600_v2.0.a1

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000298
Physical Location & Seq
Reverse (-)
16867378 .. 16867872
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G185600.1

Sequence Viewer

Length: 495 bp
ATGCCAGAATTTCGCTTGATAAACTCATGTAATGGTCTGCTTTGTTTTGGAGCTAATGAAGGCTTTCTCCTGTTTGTGTGCAACCCTGTTTTGGGGGAGTACATCACCATTCCACCTGCTAATAGAAACGACAAGTGGCTTATTGTTGGACTTGGTTTTTGCATTGGGACCAATGTGTACAAGGTGTTTCAGTTGAACAACCCGGACACTGAGGCTGAGATTTACACCATTGGCGCAGGAGGAGCATGGAGAAGCATTGGACCCCCTCCTCCTGGGGATTTTAATAACTTATTGTTCAATAATTTTCTTCATGGAGCTGTTCATTGGATTCCCTATGGTGGTAGAAGTACAAGTTCCCAGGTTATACAATCTTTCGACTTTGAAAGAGAACAATTTCGGCCATTATCACTACCTAGTTTGCTAGCAAAGAATGAATTTCTGTATAGTTTGACATTGGAAGTGCTAGGCGGAAACAAAATAGAATTTTTATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

165

Amino Acids

18.28

Weight (kDa)

5.09

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 124
Acc36I ACCTGC 1 cut(s) 124
AciI CCGC 1 cut(s) 468
AcoI YGGCCR 1 cut(s) 398
AcsI RAATTY 3 cut(s) 8, 434, 482
AfaI GTAC 3 cut(s) 101, 179, 349
AfiI CCNNNNNNNGG 4 cut(s) 91, 92, 272, 338
AgsI TTSAA 3 cut(s) 196, 298, 383
AjnI CCWGG 2 cut(s) 271, 357
AluBI AGCT 2 cut(s) 53, 317
AluI AGCT 2 cut(s) 53, 317
AoxI GGCC 1 cut(s) 398
ApoI RAATTY 3 cut(s) 8, 434, 482
ArsI GACNNNNNNTTYG 2 cut(s) 141, 173
Asp700I GAANNNNTTC 2 cut(s) 63, 393
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 168, 260
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 97
AsuNHI GCTAGC 1 cut(s) 421
AvaII GGWCC 2 cut(s) 168, 260
BciT130I CCWGG 2 cut(s) 273, 359
BcnI CCSGG 1 cut(s) 203
BfaI CTAG 3 cut(s) 414, 422, 464
BfuAI ACCTGC 1 cut(s) 124
Bme1390I CCNGG 3 cut(s) 203, 273, 359
Bme18I GGWCC 2 cut(s) 168, 260
BmgT120I GGNCC 2 cut(s) 168, 260
BmiI GGNNCC 2 cut(s) 169, 262
BmrFI CCNGG 3 cut(s) 203, 273, 359
BmtI GCTAGC 1 cut(s) 425
BpuMI CCSGG 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 272, 357
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 92, 272, 338
BseBI CCWGG 2 cut(s) 273, 359
BseDI CCNNGG 2 cut(s) 272, 357
BseLI CCNNNNNNNGG 4 cut(s) 91, 92, 272, 338
BseMII CTCAG 2 cut(s) 201, 207
BseRI GAGGAG 2 cut(s) 255, 258
BshFI GGCC 1 cut(s) 400
BsiSI CCGG 1 cut(s) 203
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 4 cut(s) 91, 92, 272, 338
BsmFI GGGAC 1 cut(s) 181
BsnI GGCC 1 cut(s) 400
Bsp1407I TGTACA 1 cut(s) 177
BspACI CCGC 1 cut(s) 468
BspANI GGCC 1 cut(s) 400
BspCNI CTCAG 2 cut(s) 202, 208
BspLI GGNNCC 2 cut(s) 169, 262
BspMI ACCTGC 1 cut(s) 124
BspOI GCTAGC 1 cut(s) 425
BsrGI TGTACA 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 272, 357
Bst2UI CCWGG 2 cut(s) 273, 359
BstAUI TGTACA 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 2 cut(s) 210, 216
BstHHI GCGC 1 cut(s) 236
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 2 cut(s) 273, 359
BstSCI CCNGG 3 cut(s) 201, 271, 357
BsuRI GGCC 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 207
BveI ACCTGC 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 423
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 168, 260
Csp6I GTAC 3 cut(s) 100, 178, 348
CviAII CATG 3 cut(s) 27, 246, 311
CviJI RGCY 6 cut(s) 53, 63, 139, 215, 317, 400
CviKI_1 RGCY 6 cut(s) 53, 63, 139, 215, 317, 400
CviQI GTAC 3 cut(s) 100, 178, 348
DdeI CTNAG 2 cut(s) 210, 216
EaeI YGGCCR 1 cut(s) 398
EciI GGCGGA 1 cut(s) 483
Eco47I GGWCC 2 cut(s) 168, 260
EcoRII CCWGG 2 cut(s) 271, 357
FaeI CATG 3 cut(s) 30, 249, 314
FaiI YATR 6 cut(s) 28, 247, 312, 336, 365, 444
FaqI GGGAC 1 cut(s) 181
FatI CATG 3 cut(s) 26, 245, 310
FspBI CTAG 3 cut(s) 414, 422, 464
GlaI GCGC 1 cut(s) 235
HaeIII GGCC 1 cut(s) 400
HapII CCGG 1 cut(s) 203
HhaI GCGC 1 cut(s) 236
Hin1II CATG 3 cut(s) 30, 249, 314
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HinfI GANTC 1 cut(s) 328
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 81, 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 2 cut(s) 210, 216
Hsp92II CATG 3 cut(s) 30, 249, 314
HspAI GCGC 1 cut(s) 234
LmnI GCTCC 3 cut(s) 50, 242, 314
MaeI CTAG 3 cut(s) 414, 422, 464
MboII GAAGA 1 cut(s) 299
MluCI AATT 5 cut(s) 8, 301, 392, 434, 482
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 4 cut(s) 205, 233, 276, 279
MroXI GAANNNNTTC 2 cut(s) 63, 393
MseI TTAA 2 cut(s) 282, 493
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 3 cut(s) 203, 273, 359
MvaI CCWGG 2 cut(s) 273, 359
MwoI GCNNNNNNNGC 1 cut(s) 242
NciI CCSGG 1 cut(s) 203
NheI GCTAGC 1 cut(s) 421
NlaIII CATG 3 cut(s) 30, 249, 314
NlaIV GGNNCC 2 cut(s) 169, 262
PaqCI CACCTGC 1 cut(s) 124
PdmI GAANNNNTTC 2 cut(s) 63, 393
PfeI GAWTC 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 271, 357
PspGI CCWGG 2 cut(s) 271, 357
PspN4I GGNNCC 2 cut(s) 169, 262
PspPI GGNCC 2 cut(s) 168, 260
RsaI GTAC 3 cut(s) 101, 179, 349
RsaNI GTAC 3 cut(s) 100, 178, 348
SaqAI TTAA 2 cut(s) 282, 493
Sau96I GGNCC 2 cut(s) 168, 260
ScrFI CCNGG 3 cut(s) 203, 273, 359
SetI ASST 6 cut(s) 55, 118, 186, 319, 363, 415
SinI GGWCC 2 cut(s) 168, 260
Sse9I AATT 5 cut(s) 8, 301, 392, 434, 482
SsiI CCGC 1 cut(s) 468
SspMI CTAG 3 cut(s) 414, 422, 464
StyD4I CCNGG 3 cut(s) 201, 271, 357
TaqI TCGA 1 cut(s) 375
TasI AATT 5 cut(s) 8, 301, 392, 434, 482
TatI WGTACW 3 cut(s) 99, 177, 347
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 2 cut(s) 282, 493
Tru9I TTAA 2 cut(s) 282, 493
TscAI CASTG 1 cut(s) 214
TspDTI ATGAA 4 cut(s) 72, 299, 311, 447
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 2 cut(s) 168, 260
XapI RAATTY 3 cut(s) 8, 434, 482
XmnI GAANNNNTTC 2 cut(s) 63, 393
XspI CTAG 3 cut(s) 414, 422, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.