Rh4AG179100

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000298
Physical Location & Seq
Reverse (-)
44884080 .. 44885097
1018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG179100.1

Sequence Viewer

Length: 345 bp
ATGAAGAATTACGGTGTTCAAGAGTCTTGGACTAAAGCTTTTGTTGTGGATCGAAATCCACAATTTGCCAGGACAGGTGTGTATGAACCAATTCTGTTCTTGAGCGATGGGGAAATCCTAATGAAAAGTGATTGTGGTGTGATTCGTTATAATCATGAAACTAAGAATCTTATGGAAACTAAAATAGTTCGGACTCGTCGGACCCGTATTCATGCAATTCGTTATTGGCCATCCTTTGTTTCATTCGATGATGTTTCAAAAGGAGAGGTGGTGGAAAGAGTAGGAAACAATAGGAAACTTGAGAAGCATGCTGGTGAAGGGAGTAGTGGTTGTGCTGGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

114

Amino Acids

13.0

Weight (kDa)

9.23

Isoelectric Point (pI)

17.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AclWI GGATC 1 cut(s) 57
AcoI YGGCCR 1 cut(s) 227
AgsI TTSAA 2 cut(s) 20, 258
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
AlwI GGATC 1 cut(s) 57
AoxI GGCC 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 326
AvaII GGWCC 1 cut(s) 201
BalI TGGCCA 1 cut(s) 229
BccI CCATC 2 cut(s) 101, 238
BciT130I CCWGG 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 70
BpuEI CTTGAG 2 cut(s) 121, 320
BsaBI GATNNNNATC 1 cut(s) 54
BsaXI ACNNNNNCTCC 4 cut(s) 255, 285, 313, 343
Bse8I GATNNNNATC 1 cut(s) 54
BseBI CCWGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 230
BseJI GATNNNNATC 1 cut(s) 54
BshFI GGCC 1 cut(s) 229
BsnI GGCC 1 cut(s) 229
Bsp143I GATC 1 cut(s) 49
BspANI GGCC 1 cut(s) 229
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 203
BspPI GGATC 1 cut(s) 57
BssMI GATC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 230
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 68
BsuRI GGCC 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 309
CciI TCATGA 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 201
CviAII CATG 3 cut(s) 155, 212, 308
CviJI RGCY 2 cut(s) 38, 229
CviKI_1 RGCY 2 cut(s) 38, 229
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 68
FaeI CATG 3 cut(s) 158, 215, 311
FaiI YATR 6 cut(s) 84, 150, 156, 173, 213, 309
FatI CATG 3 cut(s) 154, 211, 307
FokI GGATG 1 cut(s) 217
HaeIII GGCC 1 cut(s) 229
Hin1II CATG 3 cut(s) 158, 215, 311
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 4 cut(s) 23, 142, 166, 193
HphI GGTGA 1 cut(s) 326
Hpy188I TCNGA 2 cut(s) 192, 201
Hpy188III TCNNGA 4 cut(s) 20, 100, 155, 342
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 1 cut(s) 311
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4V TGCA 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 162
Hsp92II CATG 3 cut(s) 158, 215, 311
Kzo9I GATC 1 cut(s) 49
LpnPI CCDG 5 cut(s) 55, 60, 82, 297, 321
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 1 cut(s) 16
MlsI TGGCCA 1 cut(s) 229
MluCI AATT 4 cut(s) 7, 62, 90, 216
MluNI TGGCCA 1 cut(s) 229
MlyI GAGTC 2 cut(s) 32, 187
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 1 cut(s) 259
Mox20I TGGCCA 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 90
MscI TGGCCA 1 cut(s) 229
MslI CAYNNNNRTG 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 229
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
NdeII GATC 1 cut(s) 49
NlaIII CATG 3 cut(s) 158, 215, 311
NlaIV GGNNCC 1 cut(s) 203
NspI RCATGY 1 cut(s) 311
PaeI GCATGC 1 cut(s) 311
PagI TCATGA 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 2 cut(s) 142, 166
PleI GAGTC 2 cut(s) 31, 187
PpsI GAGTC 2 cut(s) 31, 187
PsiI TTATAA 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 203
PspPI GGNCC 1 cut(s) 201
RseI CAYNNNNRTG 1 cut(s) 312
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 2 cut(s) 32, 187
ScrFI CCNGG 1 cut(s) 70
SetI ASST 3 cut(s) 40, 79, 270
SinI GGWCC 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 2 cut(s) 100, 299
SmoI CTYRAG 2 cut(s) 100, 299
SphI GCATGC 1 cut(s) 311
Sse9I AATT 4 cut(s) 7, 62, 90, 216
StyD4I CCNGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 14
TaqI TCGA 2 cut(s) 52, 246
TasI AATT 4 cut(s) 7, 62, 90, 216
TfiI GAWTC 2 cut(s) 142, 166
TspDTI ATGAA 6 cut(s) 17, 99, 137, 171, 200, 231
VpaK11BI GGWCC 1 cut(s) 201
XceI RCATGY 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.